View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17916_low_3 (Length: 473)
Name: NF17916_low_3
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 203 - 422
Target Start/End: Original strand, 22702924 - 22703147
Alignment:
| Q |
203 |
cctattatatcaacaatcaatggtttggtcacatgattttcatgtgagacgaatctttt-tcctaattatataggtgtttctgacaacataacctcgtgg |
301 |
Q |
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| T |
22702924 |
cctattatatcaacaatcaatggtttggtcacatgattttcatgtgagacgaatcttttttcctaattatataggtgtttcagacaacataacctcgtgg |
22703023 |
T |
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| Q |
302 |
acagagagaatatacaagaaacgaacnnnnnnntaactcatgggctgtccaattttatttttgtctatt---tgaacttgacggagagtttcccttaaca |
398 |
Q |
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| T |
22703024 |
acagagagaatatacaagaaacgaacaaaaagagtactcatgggctgtccaattttatttttgtctttttgatgaacttgacggagagtttcccttaaca |
22703123 |
T |
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| Q |
399 |
tggtgtaagtcagacatccttcac |
422 |
Q |
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| T |
22703124 |
tggtgtaagtcagacatccttcac |
22703147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 22702713 - 22702888
Alignment:
| Q |
7 |
aataaaaacaagttaagagaccgacatggtgcttgtctg---------------gtaaaggagaagatagtgtaatgcaaatatctcttaagaaagagga |
91 |
Q |
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| T |
22702713 |
aataaaaacaagttaagagaccgacatggtgcttgtctgaacgctatttttgaggtaaaggagaagatagtgtaatacaaatatctcttaagaaagagga |
22702812 |
T |
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| Q |
92 |
gattcttttaggtcatgttctctcatgatttttcaattgaagaaatcttcagcaccattaaactcgtttatctcgg |
167 |
Q |
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| T |
22702813 |
gattcttttaggtcatgttctctcatgatttttcaattgaagaaatcttcagcaccattaaactcatttatctcgg |
22702888 |
T |
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