View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17916_low_5 (Length: 431)
Name: NF17916_low_5
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 108 - 414
Target Start/End: Original strand, 15262570 - 15262876
Alignment:
| Q |
108 |
taccatggcatcctcaaattcaccatgtgcagcatgcaagtttctacgccgaaaatgtcaaccagaatgtgcatttgcaccttattttccacctgatcag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15262570 |
taccatggcatcctcaaattcaccatgtgcagcatgcaagtttctacgccgaaaatgccaaccagaatgtgcatttgcaccttattttccacctgatcag |
15262669 |
T |
|
| Q |
208 |
ccacaaaaatttgcaaatgttcatagaatttttggagcaagtaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgttaatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15262670 |
ccacaaaaatttgcaaatgttcatagaatttttggagcaagcaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgtgaatt |
15262769 |
T |
|
| Q |
308 |
cacttgcttatgaagctgagatgcgacttcgagatcctgtttatggttgtgttggtgtaatttctctccttcaacaccaacttcgtcaacttcagatgga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15262770 |
cacttgcttatgaagctgagatgcgacttcgagatcctgtttatggttgtgttggtgtaatttctctccttcaacaccaacttcgtcagcttcagatgga |
15262869 |
T |
|
| Q |
408 |
tctttat |
414 |
Q |
| |
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||||||| |
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| T |
15262870 |
tctttat |
15262876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 43583251 - 43583393
Alignment:
| Q |
181 |
tttgcaccttattttccacctgatcagccacaaaaatttgcaaatgttcatagaatttttggagcaagtaatgttacaaagcttctcaatgatttacacc |
280 |
Q |
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| T |
43583251 |
tttgcaccttacttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctcc |
43583350 |
T |
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| Q |
281 |
ctcaccaacgtgaagatgctgttaattcacttgcttatgaagc |
323 |
Q |
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| T |
43583351 |
ctcaccaaagggaggatgctgtgaactcccttgcttatgaagc |
43583393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 591118 - 591254
Alignment:
| Q |
120 |
ctcaaattcaccatgtgcagcatgcaagtttctacgccgaaaatgtcaaccagaatgtgca--tttgcaccttattttccacctgatcagccacaaaaat |
217 |
Q |
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||||||||| |||||||| || |||||||||||| | ||||||| |||||| || |||| |||||||||||||| ||||| || |||| || || | |
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| T |
591118 |
ctcaaattctccatgtgctgcttgcaagtttctaagaagaaaatg-caaccaagat-tgcatttttgcaccttatttcccaccagaagagcctcataagt |
591215 |
T |
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| Q |
218 |
ttgcaaatgttcatagaatttttggagcaagtaatgtta |
256 |
Q |
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||||||||||||| | ||| ||||| ||||||||||||| |
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| T |
591216 |
ttgcaaatgttcacaaaatatttggtgcaagtaatgtta |
591254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 327
Target Start/End: Complemental strand, 12360816 - 12360697
Alignment:
| Q |
208 |
ccacaaaaatttgcaaatgttcatagaatttttggagcaagtaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgttaatt |
307 |
Q |
| |
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||||||||||||||||||||||| | ||| ||||| ||||| ||||| | || ||||| ||||| | || || || ||| | |||||||| || || | |
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| T |
12360816 |
ccacaaaaatttgcaaatgttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaact |
12360717 |
T |
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| Q |
308 |
cacttgcttatgaagctgag |
327 |
Q |
| |
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| |||||||||||||||||| |
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| T |
12360716 |
ctcttgcttatgaagctgag |
12360697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 19281994 - 19282025
Alignment:
| Q |
121 |
tcaaattcaccatgtgcagcatgcaagtttct |
152 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19281994 |
tcaaattcaccatgtgcagcatgcaagtttct |
19282025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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