View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17916_low_6 (Length: 390)
Name: NF17916_low_6
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 6946490 - 6946791
Alignment:
| Q |
18 |
aaattaccatcttaattgactcaagaaattagttcacacagttgtgttgtgcacataaaatacatagttcacacnnnnnnnnttaaattaaagttgacta |
117 |
Q |
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| T |
6946490 |
aaattaccatcttaattgactcaagaaattagtttacacacttgtg-----cgcgtagaatacatagttcacacaaaaaaa-ttaaatcaaagttgacta |
6946583 |
T |
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| Q |
118 |
ttaatagaaaaattatcaaaacctactaacggatgatcaatcaaattcaacttgattcgatcccaattcaatcccgtcaacaaaatgtcatcaattcaat |
217 |
Q |
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| T |
6946584 |
tta-tagaaaaattatcaaaacctactaacggatgatcaatcaaattcaacttggttcgatcccaattcaatccagtcaacaaaatgtcatcaattcaat |
6946682 |
T |
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| Q |
218 |
caaaatctaaccacgcgatatactc-tttagatttgacgtgcctc--cgtatcagatacatatcttatcgacacgaacacataggattacgttaaattat |
314 |
Q |
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| T |
6946683 |
caaaatctaaccacgcgatatattcttttagatttgatgtgtctctgtgtgtcagatacatatcttatcgacacgga-acataggattacattaaattat |
6946781 |
T |
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| Q |
315 |
actttctcaa |
324 |
Q |
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| T |
6946782 |
attttctcaa |
6946791 |
T |
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