View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17916_low_8 (Length: 375)

Name: NF17916_low_8
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17916_low_8
NF17916_low_8
[»] chr1 (10 HSPs)
chr1 (15-356)||(51221726-51222067)
chr1 (185-338)||(51382145-51382298)
chr1 (189-337)||(51857801-51857949)
chr1 (171-338)||(51781990-51782157)
chr1 (166-316)||(51828969-51829120)
chr1 (231-338)||(51763681-51763786)
chr1 (189-337)||(51831604-51831752)
chr1 (239-286)||(25869453-25869500)
chr1 (196-279)||(45693600-45693683)
chr1 (239-275)||(23896904-23896940)
[»] chr6 (2 HSPs)
chr6 (185-293)||(4183711-4183819)
chr6 (185-286)||(4744550-4744650)
[»] chr5 (1 HSPs)
chr5 (196-302)||(1428466-1428569)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 51221726 - 51222067
Alignment:
Q  15 cacagaggatgccatcacaagtggaaacctcgagatcatagtctcgacgccaagtaaatggaggagattggacagttgtggaggcagaggtgaaaataga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  51221726 cacagaggatgccatcacaagtggaaacctcgagatcatagtctcgacgacaagtaaatggaggagattggttagttgtggatgcagaggtgaaaataga 51221825  T
Q  115 ggagattgagaaatcaaattgaagtaactcacttgaggagttcatacagcttatattgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51221826 ggagattgagaaatcaaattgaagtaactcacttgaggagttcgtacagcttatattgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgc 51221925  T
Q  215 ttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcatgggcagccggcacaggattt 314  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51221926 ttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcacgggcagccggcacaggattt 51222025  T
Q  315 cttcaacgagatggaacggaagagaaggagggtgaagtgaat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51222026 cttcaacgagatggaacggaagagaaggagggtgaagtgaat 51222067  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 185 - 338
Target Start/End: Original strand, 51382145 - 51382298
Alignment:
Q  185 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatga 284  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||||||| ||    
T  51382145 tcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttgaagga 51382244  T
Q  285 ggtgtttcatgggcagccggcacaggatttcttcaacgagatggaacggaagag 338  Q
    ||||||||| ||| ||| |||||||||||||| | || |||| |||||||||||    
T  51382245 ggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaagag 51382298  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 51857949 - 51857801
Alignment:
Q  189 ggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtg 288  Q
    ||||| |||||||||||||||| |||||| | |  || | | ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |     
T  51857949 ggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaacggagttgaaggagatt 51857850  T
Q  289 tttcatgggcagccggcacaggatttcttcaacgagatggaacggaaga 337  Q
    ||||| ||| ||| ||||||| ||||||   ||||||| ||||| ||||    
T  51857849 tttcacggggagctggcacagaatttctgtcacgagatcgaacgaaaga 51857801  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 338
Target Start/End: Complemental strand, 51782157 - 51781990
Alignment:
Q  171 tgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgca 270  Q
    ||||||| |||  |||||||||  |||||||||||||||  || || || || || ||  ||||| | ||||||||||||||||||||||| ||||  |     
T  51782157 tgaggtggtggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacg 51782058  T
Q  271 gcggagttgaatgaggtgtttcatgggcagccggcacaggatttcttcaacgagatggaacggaagag 338  Q
    |||||||| |||||| ||||||| ||| ||| | |||||||||||| |||| |||| |||||||||||    
T  51782057 gcggagtttaatgagatgtttcacggggagcagacacaggatttctgcaaccagatcgaacggaagag 51781990  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 316
Target Start/End: Complemental strand, 51829120 - 51828969
Alignment:
Q  166 tatattgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgactt-gca 264  Q
    |||||||||||| |||   | ||||| | ||||||| ||| |||| || ||| ||||||||||| ||||   || ||||||||||||||||||||| |||    
T  51829120 tatattgaggtggtggcggttgtggtcgtaggttgagaagtgaaggtgtttcctggcaaaattggaatcctcagggataagagaattccatgactttgca 51829021  T
Q  265 gatgcagcggagttgaatgaggtgtttcatgggcagccggcacaggatttct 316  Q
    ||  || |||||||||||||||||||||| ||| ||| ||||||| ||||||    
T  51829020 gacacaacggagttgaatgaggtgtttcacggggagcaggcacagtatttct 51828969  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 338
Target Start/End: Original strand, 51763681 - 51763786
Alignment:
Q  231 aatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcatgggcagccggcacaggatttcttcaacgagatggaa 330  Q
    ||||| || ||||||||||||||||||||||||||| ||| | |||||||| ||| ||||||| ||  ||||||||||| ||||||   |||||||  ||    
T  51763681 aatcatgacagataagagaattccatgacttgcagacgcaacagagttgaaggagatgtttcacgg--agccggcacagaatttctgtcacgagatcaaa 51763778  T
Q  331 cggaagag 338  Q
    ||||||||    
T  51763779 cggaagag 51763786  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 51831752 - 51831604
Alignment:
Q  189 ggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtg 288  Q
    ||||| ||||||||||  |||| |||||| |||  |||||| ||||   |||||||||||| ||||||||||||||||  || |||||||||| |||       
T  51831752 ggttggaggttgacaactgaaggtgcttcctggtgaaattggaatcttcagagataagagagttccatgacttgcagacacaacggagttgaaggagaaa 51831653  T
Q  289 tttcatgggcagccggcacaggatttcttcaacgagatggaacggaaga 337  Q
    |||||  || ||||||||||||||| || | |||||||  |||||||||    
T  51831652 tttcactgggagccggcacaggattactaccacgagatcaaacggaaga 51831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 25869453 - 25869500
Alignment:
Q  239 gagataagagaattccatgacttgcagatgcagcggagttgaatgagg 286  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||    
T  25869453 gagattagagaattccatgacttgcaaatgcagcggagttgcatgagg 25869500  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 45693600 - 45693683
Alignment:
Q  196 ggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttg 279  Q
    |||||||| |||||| || ||||| ||||| |||  |||||  ||||| ||||||||||| |||||||| ||||||||||||||    
T  45693600 ggttgacatgcgaaggtgattcttagcaaatttgggatcaattgagattagagaattccacgacttgcatatgcagcggagttg 45693683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 23896904 - 23896940
Alignment:
Q  239 gagataagagaattccatgacttgcagatgcagcgga 275  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  23896904 gagattagagaattccatgacttgcagacgcagcgga 23896940  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 4183711 - 4183819
Alignment:
Q  185 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatga 284  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||| ||||| | ||||||||||||||||| |||||||| | ||| |||||||||| ||    
T  4183711 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaagga 4183810  T
Q  285 ggtgtttca 293  Q
    |||||||||    
T  4183811 ggtgtttca 4183819  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 4744550 - 4744650
Alignment:
Q  185 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatga 284  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||| ||||| | |||||||||||||| || |||||||| | ||| |||||||||| ||    
T  4744550 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaatt-caggacttgcaaacgcaacggagttgaagga 4744648  T
Q  285 gg 286  Q
    ||    
T  4744649 gg 4744650  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 1428466 - 1428569
Alignment:
Q  196 ggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcatg 295  Q
    |||||||| || ||||||||||||||| || |||| |||   || ||| |||||||| |||| |||||| | ||| |||||||||| |||| |||||| |    
T  1428466 ggttgacatgctaagttgcttcttggcgaatttgagatc---agtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacg 1428562  T
Q  296 ggcagcc 302  Q
    || ||||    
T  1428563 ggtagcc 1428569  T

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