View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17917_high_1 (Length: 445)

Name: NF17917_high_1
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17917_high_1
NF17917_high_1
[»] chr7 (22 HSPs)
chr7 (12-308)||(16709835-16710130)
chr7 (12-308)||(17684071-17684366)
chr7 (12-193)||(43172363-43172544)
chr7 (12-304)||(23017296-23017588)
chr7 (12-303)||(21486448-21486740)
chr7 (12-183)||(5771747-5771917)
chr7 (86-216)||(42610883-42611013)
chr7 (143-307)||(31445773-31445951)
chr7 (249-306)||(43172625-43172682)
chr7 (249-308)||(5771674-5771733)
chr7 (156-193)||(33497003-33497040)
chr7 (125-193)||(6268857-6268925)
chr7 (125-187)||(1254147-1254209)
chr7 (119-192)||(14741826-14741899)
chr7 (388-429)||(21486849-21486890)
chr7 (150-191)||(26201700-26201741)
chr7 (386-419)||(42611228-42611261)
chr7 (386-422)||(27149395-27149431)
chr7 (253-309)||(37915590-37915646)
chr7 (254-294)||(42611069-42611109)
chr7 (386-429)||(42044205-42044248)
chr7 (119-192)||(4639527-4639600)
[»] chr6 (18 HSPs)
chr6 (12-306)||(16438999-16439298)
chr6 (12-192)||(33640896-33641075)
chr6 (12-290)||(28900350-28900638)
chr6 (12-193)||(2607205-2607386)
chr6 (12-192)||(24194769-24194949)
chr6 (12-184)||(31534729-31534886)
chr6 (220-308)||(31975246-31975339)
chr6 (249-308)||(31534599-31534658)
chr6 (12-91)||(31975364-31975443)
chr6 (126-184)||(15381210-15381268)
chr6 (125-192)||(21010537-21010604)
chr6 (386-430)||(16439402-16439446)
chr6 (253-308)||(32567820-32567875)
chr6 (254-306)||(2607485-2607537)
chr6 (386-430)||(28042094-28042138)
chr6 (220-277)||(2607423-2607485)
chr6 (386-419)||(31534464-31534497)
chr6 (386-418)||(31975112-31975144)
[»] chr1 (42 HSPs)
chr1 (12-308)||(35176767-35177071)
chr1 (12-306)||(49236491-49236800)
chr1 (12-227)||(32759689-32759904)
chr1 (14-306)||(49452554-49452860)
chr1 (12-292)||(42303897-42304184)
chr1 (14-308)||(47371061-47371370)
chr1 (12-192)||(3593534-3593714)
chr1 (20-193)||(25253833-25254009)
chr1 (101-193)||(28403602-28403694)
chr1 (211-308)||(32759572-32759674)
chr1 (131-217)||(19863274-19863360)
chr1 (12-167)||(48966153-48966293)
chr1 (249-308)||(8122498-8122557)
chr1 (125-193)||(226322-226390)
chr1 (249-309)||(2292764-2292824)
chr1 (249-308)||(48966008-48966067)
chr1 (125-192)||(46042299-46042366)
chr1 (249-307)||(19863441-19863499)
chr1 (245-308)||(3593782-3593845)
chr1 (202-307)||(15927554-15927663)
chr1 (150-188)||(52182484-52182522)
chr1 (119-192)||(1242934-1243007)
chr1 (386-419)||(15928302-15928335)
chr1 (269-306)||(28403444-28403481)
chr1 (386-419)||(47370927-47370960)
chr1 (386-419)||(49452417-49452450)
chr1 (386-419)||(49971048-49971081)
chr1 (12-80)||(28403700-28403768)
chr1 (386-429)||(2292615-2292658)
chr1 (220-287)||(25254046-25254118)
chr1 (386-421)||(27257613-27257648)
chr1 (387-430)||(35193745-35193788)
chr1 (249-291)||(226446-226488)
chr1 (253-291)||(21447243-21447281)
chr1 (249-283)||(28403495-28403529)
chr1 (388-429)||(3583341-3583382)
chr1 (386-419)||(25254251-25254284)
chr1 (119-192)||(41353816-41353889)
chr1 (125-176)||(2292885-2292934)
chr1 (386-430)||(42303741-42303785)
chr1 (387-419)||(49236364-49236396)
chr1 (387-419)||(51903560-51903592)
[»] chr4 (36 HSPs)
chr4 (14-297)||(33139094-33139393)
chr4 (14-307)||(24965984-24966293)
chr4 (12-192)||(29509685-29509864)
chr4 (12-192)||(32890174-32890353)
chr4 (12-308)||(46862437-46862734)
chr4 (20-165)||(46287016-46287162)
chr4 (95-189)||(50517495-50517589)
chr4 (26-177)||(35518147-35518283)
chr4 (249-308)||(29509554-29509613)
chr4 (249-307)||(32890426-32890484)
chr4 (220-308)||(12754822-12754915)
chr4 (249-308)||(14334862-14334921)
chr4 (149-217)||(26490874-26490942)
chr4 (12-120)||(53574002-53574109)
chr4 (125-184)||(26955688-26955747)
chr4 (253-302)||(26955804-26955853)
chr4 (125-177)||(25842621-25842673)
chr4 (386-430)||(33141034-33141078)
chr4 (125-193)||(40317294-40317362)
chr4 (125-193)||(40327368-40327436)
chr4 (386-429)||(29509409-29509452)
chr4 (245-296)||(50517639-50517690)
chr4 (249-295)||(22480177-22480223)
chr4 (147-193)||(24454025-24454071)
chr4 (148-189)||(871954-871995)
chr4 (386-419)||(872203-872236)
chr4 (386-430)||(12755019-12755063)
chr4 (386-430)||(26973032-26973076)
chr4 (386-430)||(32890587-32890631)
chr4 (386-429)||(17503261-17503304)
chr4 (249-292)||(35518026-35518069)
chr4 (135-176)||(4511593-4511634)
chr4 (119-192)||(29469538-29469611)
chr4 (386-430)||(26490623-26490667)
chr4 (386-430)||(29469832-29469876)
chr4 (128-192)||(42937234-42937298)
[»] chr2 (31 HSPs)
chr2 (15-302)||(31846665-31846967)
chr2 (15-307)||(38295228-38295524)
chr2 (41-308)||(9731271-9731552)
chr2 (12-308)||(40829931-40830241)
chr2 (20-307)||(34342549-34342852)
chr2 (12-193)||(18727264-18727445)
chr2 (125-193)||(32294265-32294333)
chr2 (249-304)||(18727114-18727169)
chr2 (249-296)||(30850906-30850953)
chr2 (220-306)||(2308048-2308139)
chr2 (249-307)||(42242348-42242406)
chr2 (125-177)||(24026205-24026257)
chr2 (125-192)||(37810514-37810581)
chr2 (125-184)||(30850794-30850853)
chr2 (249-307)||(2103815-2103873)
chr2 (148-193)||(3858322-3858367)
chr2 (249-309)||(37654888-37654948)
chr2 (386-429)||(43618159-43618202)
chr2 (159-193)||(2308178-2308212)
chr2 (386-419)||(9731661-9731694)
chr2 (156-193)||(15926489-15926526)
chr2 (386-419)||(18726975-18727008)
chr2 (119-192)||(18899556-18899629)
chr2 (159-193)||(43617911-43617945)
chr2 (386-419)||(31846524-31846557)
chr2 (386-419)||(32241844-32241877)
chr2 (156-193)||(32294459-32294495)
chr2 (390-419)||(42242513-42242542)
chr2 (386-422)||(32294731-32294767)
chr2 (386-430)||(34342954-34342998)
chr2 (386-430)||(40830342-40830386)
[»] chr3 (23 HSPs)
chr3 (12-306)||(4962204-4962513)
chr3 (53-307)||(7437051-7437310)
chr3 (12-308)||(33693563-33693877)
chr3 (12-308)||(43173200-43173502)
chr3 (23-306)||(49458679-49458972)
chr3 (22-306)||(21385982-21386281)
chr3 (249-307)||(32766504-32766562)
chr3 (15-92)||(16155449-16155526)
chr3 (133-193)||(30238191-30238251)
chr3 (220-306)||(1666396-1666487)
chr3 (386-419)||(7436915-7436948)
chr3 (148-193)||(21718359-21718404)
chr3 (386-430)||(7667443-7667487)
chr3 (125-169)||(29690982-29691026)
chr3 (386-421)||(25050275-25050310)
chr3 (387-430)||(43173605-43173648)
chr3 (386-419)||(24064006-24064039)
chr3 (156-193)||(25050034-25050071)
chr3 (386-419)||(32766628-32766661)
chr3 (386-419)||(33693979-33694012)
chr3 (119-192)||(53836333-53836406)
chr3 (249-289)||(30238099-30238139)
chr3 (386-418)||(53836627-53836659)
[»] chr8 (41 HSPs)
chr8 (12-192)||(42423503-42423682)
chr8 (95-307)||(3007313-3007529)
chr8 (12-305)||(12521900-12522208)
chr8 (23-304)||(12737580-12737875)
chr8 (12-306)||(44977029-44977337)
chr8 (45-308)||(27974458-27974737)
chr8 (45-308)||(28031727-28032006)
chr8 (12-193)||(27878233-27878414)
chr8 (12-193)||(28018414-28018595)
chr8 (11-297)||(8029356-8029640)
chr8 (12-193)||(27915177-27915358)
chr8 (12-193)||(27961596-27961777)
chr8 (95-193)||(27869562-27869659)
chr8 (12-165)||(6387748-6387901)
chr8 (113-306)||(24082597-24082796)
chr8 (249-306)||(18984880-18984937)
chr8 (157-308)||(41394306-41394472)
chr8 (249-306)||(42423755-42423812)
chr8 (255-307)||(27869430-27869482)
chr8 (125-192)||(33177492-33177559)
chr8 (11-69)||(27974734-27974792)
chr8 (11-69)||(28032003-28032061)
chr8 (12-71)||(41394238-41394296)
chr8 (249-306)||(6387395-6387452)
chr8 (148-193)||(7760953-7760998)
chr8 (263-308)||(27876585-27876630)
chr8 (263-308)||(28016766-28016811)
chr8 (386-430)||(42423916-42423960)
chr8 (387-430)||(41394575-41394618)
chr8 (144-193)||(24067259-24067306)
chr8 (147-193)||(35879824-35879870)
chr8 (147-193)||(37131199-37131245)
chr8 (386-419)||(8029211-8029244)
chr8 (386-419)||(26619984-26620017)
chr8 (125-176)||(4870784-4870836)
chr8 (157-217)||(6387499-6387559)
chr8 (148-193)||(17234872-17234917)
chr8 (119-192)||(19484588-19484661)
chr8 (386-419)||(24082898-24082931)
chr8 (390-430)||(12737429-12737469)
chr8 (386-430)||(18985041-18985085)
[»] scaffold0013 (1 HSPs)
scaffold0013 (12-307)||(89581-89892)
[»] chr5 (14 HSPs)
chr5 (33-308)||(29716395-29716683)
chr5 (12-185)||(34218729-34218901)
chr5 (125-183)||(15286126-15286184)
chr5 (249-306)||(15286016-15286072)
chr5 (125-176)||(36196017-36196068)
chr5 (132-193)||(31913805-31913866)
chr5 (249-307)||(3032652-3032710)
chr5 (119-193)||(5650425-5650499)
chr5 (143-193)||(21490043-21490092)
chr5 (249-288)||(36180046-36180085)
chr5 (156-193)||(16497534-16497571)
chr5 (119-192)||(28622821-28622894)
chr5 (388-429)||(29759325-29759366)
chr5 (249-289)||(16497443-16497483)
[»] scaffold0573 (1 HSPs)
scaffold0573 (12-290)||(9156-9444)
[»] scaffold0118 (1 HSPs)
scaffold0118 (125-177)||(38243-38295)
[»] scaffold0116 (1 HSPs)
scaffold0116 (386-422)||(4943-4979)
[»] scaffold0024 (2 HSPs)
scaffold0024 (263-307)||(136086-136130)
scaffold0024 (386-418)||(136233-136265)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 16709835 - 16710130
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  16709835 atgaacaggggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggtgattgcgacaccagttagggttgcggtggtg 16709934  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||    
T  16709935 atgtttgttgaccttttgaagaaattaacttgtttattttttagatagtcttattaacaactttaggaacttgtgaaacttgcttttttggatggtttta 16710034  T
Q  212 tggatggaagacttatgaaactacgattttgtgaatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  16710035 tggatggaagacttatgaaactatgattttgtgaata-ttgtattttgatgctaagttgagcataacattttattatgatagtttggtataatttgc 16710130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 17684071 - 17684366
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  17684071 atgaacaggggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggtgattgcgacaccagttagggttgcggtggtg 17684170  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||    
T  17684171 atgtttgttgaccttttgaagaaattaacttgtttattttttagatagtcttattaacaactttaggaacttgtgaaacttgcttttttggatggtttta 17684270  T
Q  212 tggatggaagacttatgaaactacgattttgtgaatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  17684271 tggatggaagacttatgaaactatgattttgtgaata-ttgtattttgatgctaagttgagcataacattttattatgatagtttggtataatttgc 17684366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 43172363 - 43172544
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||| ||  |||| ||||||||||||    
T  43172363 atgaataggggagcacataccagttagggttgcgattctgacgatggaaattcagatttcgacgccgatgattgcgacaccggttagggttgcggtggtg 43172462  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
     ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43172463 gtgtctgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttacgaacttgtgaaacttg 43172544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 23017296 - 23017588
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||         ||||      ||| ||||| ||||||||||||    
T  23017296 atgaacatgggaccacataccagttagggttgcgattctgacggtggaaattcagattt---------tgat------gccgattagggttgcggtggtg 23017380  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||    
T  23017381 gtgtttgttgaccttttgaaaaaattaactagtttattttttagatagttttattaacaactttagaaacttgtgaaacttgcttttttggatggtttta 23017480  T
Q  212 tggatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    || |||            ||||||||||||| || |||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23017481 tgaatgacttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctaagttgagcataacgttttattatggtagttt 23017580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 21486448 - 21486740
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||| ||||||||| ||||||||||| ||||| |||| |||||||||||||||| ||| ||||               |||  |||| ||||||    
T  21486448 atgaacagggaagcacatactagttagggttgtgattccgacgatggaaattcagatttcgacgccggt---------------taggattgcagtggtg 21486532  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttatttt-ttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttt 210  Q
     ||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||| |||||    
T  21486533 gtgtttgttgaccttttgaaaaaattaactagtttatttttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatagtttt 21486632  T
Q  211 atggatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtt 295  Q
    ||| |||            ||||||||||||| || |||||||||    ||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21486633 atgaatgacttaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagtataacgttttattatggtagtt 21486732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 5771917 - 5771747
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| | ||||||||||||||||||||| |||||| ||| | |||||||| || | ||||  ||||||| | |||||   ||||||||||| |||||    
T  5771917 atgaacatgagagcacataccagttagggttacgattccgacaggggaaattctgactgcaacaccggtgatcgtgacgctggttagagttgcgatggtg 5771818  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaactt 183  Q
     |||||| |||| ||||||||||||||||  ||||||||||| |||||||||||||| ||||||| ||||||    
T  5771817 gtgtttgatgaccttttgaagaaattaac-agtttatttttttgatagttttattaaaaactttacgaactt 5771747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 42610883 - 42611013
Alignment:
Q  86 cgacgccaattagagttgcggtggtgatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgt 185  Q
    ||||||| |||||  || |||||||| ||||||||||| ||||||| ||||||||| || || ||||||||| |||||||||||||||||||||||||||    
T  42610883 cgacgccgattaggattacggtggtggtgtttgttgaccttttgaaaaaattaactagtctagtttttagatggttttattaacaactttaggaacttgt 42610982  T
Q  186 gaaacttgnnnnnnnggatggttttatggat 216  Q
    ||||||||       ||||||||||||||||    
T  42610983 gaaacttgcttttttggatggttttatggat 42611013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 143 - 307
Target Start/End: Original strand, 31445773 - 31445951
Alignment:
Q  143 gtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatgg--aagactta-------tgaaac- 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||   | |||||       | ||||     
T  31445773 gtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcatttttggatggttttatggatggcttaaacttagagactttaaaact 31445872  T
Q  233 tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    || |||||||||    ||| |||||||||||||||||  |||||||||| || ||||||||||| ||||||||||||||    
T  31445873 tatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttg 31445951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 43172625 - 43172682
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    ||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||    
T  43172625 tttgtattttggtgttaagttgaacattacgttttattatggtagtttggtataattt 43172682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 5771733 - 5771674
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||||||| ||||| || |||||||||||| |||| ||||||||||||||||||    
T  5771733 tttgtattttgatgttaagtggatcataacgttttactatgatagtttggtataatttgc 5771674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 33497040 - 33497003
Alignment:
Q  156 atagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33497040 atagttttattaacaactttaggaacttgtgaaacttg 33497003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 6268857 - 6268925
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||| ||||||||| |||| ||| ||  |||| ||||||||||||||||| |||||||||||||||    
T  6268857 ttttgaaaaaattaactagtttgtttcttgaataggtttattaacaactttagaaacttgtgaaacttg 6268925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 1254209 - 1254147
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtga 187  Q
    ||||||||||| |||||  |||||||||| ||||| ||||||||||||||||| || ||||||    
T  1254209 ttttgaagaaactaactaatttattttttggataggtttattaacaactttagaaatttgtga 1254147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 14741826 - 14741899
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||| ||||||||||||||    
T  14741826 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 14741899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 21486849 - 21486890
Alignment:
Q  388 taaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  21486849 taaactcatacgagttctcgagtcgagtttacttaaagaaaa 21486890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 26201741 - 26201700
Alignment:
Q  150 ttttagatagttttattaacaactttaggaacttgtgaaact 191  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  26201741 ttttggatagttttattaacaattttaggaacttgtgaaact 26201700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 42611228 - 42611261
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  42611228 ggtaaactcgtacgagttctcgagtcgagtttac 42611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 27149395 - 27149431
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttactta 422  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27149395 ggtaaactcgtacgagttctcgagtcgagcttactta 27149431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 37915646 - 37915590
Alignment:
Q  253 tattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgca 309  Q
    ||||||||| ||||||| |||||| | |||| |||||||||||||||||| ||||||    
T  37915646 tattttgatactaagttaagcataccatttttttatggtagtttggtatactttgca 37915590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 42611069 - 42611109
Alignment:
Q  254 attttgatgctaagttgagcataacgttttattatggtagt 294  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  42611069 attttgatgctaagttaagcataatgttttattatggtagt 42611109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 42044205 - 42044248
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||    
T  42044205 ggtaaactcatacgagttctcgagtcgaatttatttaaacaaaa 42044248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 4639600 - 4639527
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||  ||||||||||||||    
T  4639600 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 4639527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 16438999 - 16439298
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||||||||||||||    |||| ||||| ||||||    
T  16438999 atgaacatgggagcacataccagttagggttgcgat-ctgacagtggaaatttagatttcgacgccggtgattgcgacgttggttagggttgcagtggtg 16439097  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||    
T  16439098 gtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttagaaacttgtgaaacttgcttttttggatggtttta 16439197  T
Q  212 tggatg---gaagacttatgaaactac-gattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataa 303  Q
    ||||||   ||| ||||| || ||| | |||||||||    ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16439198 tggatgtctgaa-actta-gagacttctgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataa 16439295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 33641075 - 33640896
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||||||| |||||| ||||  |||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||    
T  33641075 atgaacatgggagcacataccagttatggttgc-attccaacggtggaaattcagatttcgacgtcggtgattgcgacgcaagttagggttgcggtggtg 33640977  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
     |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33640976 gtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 33640896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 28900638 - 28900350
Alignment:
Q  12 atgaacaggggagcacata----ccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggt 107  Q
    |||||||||||||||||||    ||||||||||||| ||||  ||||||||||||||| ||||||||| || | |||||||| ||  |||| ||||  ||    
T  28900638 atgaacaggggagcacatatataccagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttattgcgacaccggttagggttgttgt 28900539  T
Q  108 ggtgatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggt 207  Q
    |||  ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  28900538 ggtagtgtttgttgtccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggt 28900439  T
Q  208 tttatggatg--gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatgg 290  Q
    |||||| |||    | ||||| || || || |||||||||    ||| |||||||||||||||||||||||||||||  |||||||||||    
T  28900438 tttatgaatgacttaaactta-gagacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatattttattatgg 28900350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 2607205 - 2607386
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| | |||||||||||||||||  ||||||||| ||||||||||||||| ||||| || |||||||||||||||||  |||| |||| ||||||     
T  2607205 atgaacatgagagcacataccagttagcattgcgattccgacggtggaaattcatatttcgacatcggtgattgcgacgccggttagggttgtggtggta 2607304  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
     ||||||||||| ||||||| ||||||||| |||| |||||||||||||||| ||||||||||||| ||||||| |||||||    
T  2607305 gtgtttgttgaccttttgaaaaaattaactagtttcttttttagatagtttttttaacaactttagaaacttgtaaaacttg 2607386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 24194769 - 24194949
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| ||||  |||||||||||| | || |   ||||  |||||||||||    
T  24194769 atgaacatgggagcatataccagttagggttgcgactccgacggtggaaattcatattttgacgtcggtgattacaacactggttaggattgcggtggtg 24194868  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
      ||||| |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  24194869 gagtttgctgaccttttgaagaaattaactagtttattttttagatagttttaataacaactttaggaatttgtgaaactt 24194949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 31534886 - 31534729
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| | ||||||||| |||||||||||||||||  |||||||||||||||||||||               |||||| ||||| ||||||||  ||    
T  31534886 atgaacaagagagcacatatcagttagggttgcgatttcgacggtggaaattcagatttc---------------gacgccgattagggttgcggtcatg 31534802  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttg 184  Q
     ||||||||||  ||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||    
T  31534801 gtgtttgttgatcttttgaagaaattaagtagtttatttcttagatagttttattaacaactttagaaacttg 31534729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 31975339 - 31975246
Alignment:
Q  220 agacttatgaaact-acgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||||||| | |||||||||    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31975339 agacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttgatataatttgc 31975246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 31534658 - 31534599
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  31534658 tttgtattttgatgctaagttgagcataatgttttattatggtagtttggtgtaatttgc 31534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 31975443 - 31975364
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgc 91  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||  ||  |||||||| ||||||    
T  31975443 atgaacaggggagcacataccagttagggttgcgattccgaaggtggaaattcatattttgacaccggtgattacgacgc 31975364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 15381268 - 15381210
Alignment:
Q  126 tttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttg 184  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  15381268 tttgaagaaattaacttgtttattttttggatagttttattaacaattttagaaacttg 15381210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 21010604 - 21010537
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||||||||||||||| ||||||  ||| ||||| || |||||||||||||| ||||||||||||||    
T  21010604 ttttgaagaaattaactagtttataattttgataggttaattaacaactttagaaacttgtgaaactt 21010537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 16439402 - 16439446
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||||||||||||||||||||||||||||| || |||||||    
T  16439402 ggtaaactcgtacgagttctcgagtcgagtttacctagacaaaac 16439446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 32567875 - 32567820
Alignment:
Q  253 tattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||||||| || ||||||||||||||||||| ||||||| |||| |||||    
T  32567875 tattttgatgctaaatttagcataacgttttattatgatagtttgatatattttgc 32567820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 2607485 - 2607537
Alignment:
Q  254 attttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    |||||||||||||||||||||||| |   ||||||||||||||| ||||||||    
T  2607485 attttgatgctaagttgagcataatggaatattatggtagtttgatataattt 2607537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 28042094 - 28042138
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||    
T  28042094 ggtaaactcgtacaagttctcgagtcgagtttacctaaataaaac 28042138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 2607423 - 2607485
Alignment:
Q  220 agacttatgaaact-acgattttgtg----aatatttgtattttgatgctaagttgagcataa 277  Q
    |||||||||||||| | |||||||||    ||| |||||||||||||||||||||||||||||    
T  2607423 agacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataa 2607485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 31534497 - 31534464
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    |||||||||||||||||||| |||||||||||||    
T  31534497 ggtaaactcgtacgagttcttgagtcgagtttac 31534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 31975144 - 31975112
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagttta 418  Q
    |||||| ||||||||||||||||||||||||||    
T  31975144 ggtaaaatcgtacgagttctcgagtcgagttta 31975112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 35177071 - 35176767
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |||| ||| || |||||    
T  35177071 atgaacagaggagcgcataccagtgagggttgcgattccgacggtggaaattcagatttcgacgtcggtgattgcgacgccggttagggttacgttggtg 35176972  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg-nnnnnnnggatggtttt 210  Q
     ||||||||||| ||||||||||||| |||  |||| |||||||||||||||||||||||| ||| ||||||||||||||||        ||||||||||    
T  35176971 gtgtttgttgaccttttgaagaaattcactaatttaatttttagatagttttattaacaacattatgaacttgtgaaacttgctttttttggatggtttt 35176872  T
Q  211 atggatg--gaagacttatgaaac-tacgatttt----gtgaatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataa 303  Q
    |||| ||   || ||||| || || || ||||||    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  35176871 atgggtgactaaaacttaagagacttatgattttgtgcgtgaatttttgtattttgatgctaagttgagcataacattttattatggtagtttgctataa 35176772  T
Q  304 tttgc 308  Q
    |||||    
T  35176771 tttgc 35176767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 49236800 - 49236491
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||| ||||||||||||||  ||||||| ||||||||||||| |||||| ||||||| ||||   |||  ||||| ||||||    
T  49236800 atgaacatgggagcacataccaattagggttgcgatttcgacggtgaaaattcagatttcgacgtcgatgattgcaacgctggttatggttgctgtggtg 49236701  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     | ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||    
T  49236700 gtatttgttgaccttttaaagaaattaactagtttattttttagatagttttattaacaactttaggaacttatgaaactttcttttttggatggtttta 49236601  T
Q  212 tggatgg---aa-------gacttatgaaac-tacgatttt----gtgaatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    |||||||   ||       |||||||||||| || ||||||    || ||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  49236600 tggatggcttaaacttagggacttatgaaacttatgattttggacgttaatttttgtattttgatgctaagtagagcataacgttttattatggtagttt 49236501  T
Q  297 ggtataattt 306  Q
     |||||||||    
T  49236500 agtataattt 49236491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 32759904 - 32759689
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||  |  |||| ||||||| ||||    
T  32759904 atgaacaagggagcacatatcagttagggttgcgattccgacggtgaaaattcagatttcgacgccggtgattgcgacatcggttagggttgcgggggtg 32759805  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||||| |||||||       |||||||||||    
T  32759804 gtgtttgttgaccatttgaagaaattaactagtttattttttagatagttttattaacaattttttgaacttgtaaaacttggttttttggatggtttta 32759705  T
Q  212 tggatggaagacttat 227  Q
    ||||||||||||||||    
T  32759704 tggatggaagacttat 32759689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 49452860 - 49452554
Alignment:
Q  14 gaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgat 113  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||| ||| ||||| ||| || | |||||||||||  |||| |||||||||||  |    
T  49452860 gaacaggggagcatataccagttagggttgcgattccaacggtggaaagtcatatttcgacgccgtttattgcgacgccggttagggttgcggtggtagt 49452761  T
Q  114 gtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatg 213  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||    
T  49452760 gtttgttgtcgttttgaagaaattaactagtttattttttagatagttttattaacaaatttaggaacttgtgaaacttg-ttttttggatggttttatg 49452662  T
Q  214 gatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttgg 298  Q
    ||||            ||||||||||||| || ||||| |||    ||| |||||||||||||||||||||||||||||  |||||||| |||||||||     
T  49452661 gatgacttaaacttagagacttatgaaacttatgatttggtgcgttaatttttgtattttgatgctaagttgagcataatattttattacggtagtttga 49452562  T
Q  299 tataattt 306  Q
    ||||||||    
T  49452561 tataattt 49452554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 42304184 - 42303897
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| ||| |   |||| ||||  ||||||    
T  42304184 atgaacaggggagcacataccatttagggttgtgattcagacggtggaaattcatatttcaacgccggtgattgtgacactggttagggttgttgtggtg 42304085  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaac-ttgnnnnnnnggatggtttt 210  Q
     ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||        ||||||||||    
T  42304084 gtgtttgttgacgttttgaagaaattaactactttattttttagatagttttattaataactttaggaacttgtgaaactttctttttttggatggtttt 42303985  T
Q  211 atggatgg--aagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggta 292  Q
    ||||||||   | ||||| || || || |||||||||    ||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  42303984 atggatggcttaaactta-gagacttatgattttgtgcgttaatttttgtattttgaagctaagttgagcataacattttattatggta 42303897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 47371370 - 47371061
Alignment:
Q  14 gaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgat 113  Q
    ||||| |||||||||||||| |||||||||| |||  ||||||||||| | ||||||| ||| |||||||||| | |||  |||| |||| || |||| |    
T  47371370 gaacatgggagcacataccaattagggttgcaatttcgacggtggaaacttagatttcgacgccggtgattgcaatgccggttagggttgtggcggtggt 47371271  T
Q  114 gtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatg 213  Q
    ||| |||||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||       |||||||||||||    
T  47371270 gttcgttgaccttttgaagaaattaactagtttgttttttagattgttttattaacaactttaagaacttgtgaaacttgcttttttggatggttttatg 47371171  T
Q  214 gatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttgg 298  Q
    ||||            ||||||||||||| ||  ||||||||    ||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  47371170 gatgacttaaacttatagacttatgaaacttataattttgtgcgttaatttttatgttttgatgctaagttgagcataatgttttattatggtagtttgg 47371071  T
Q  299 tataatttgc 308  Q
    ||||||||||    
T  47371070 tataatttgc 47371061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 3593534 - 3593714
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||| ||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||| ||| |  |||||||||| ||  |||| ||||||||| ||    
T  3593534 atgaataggggagcacatatcagttagtgttgtgattctgacagtggaaattcagatttcgacgccaatgattgcgacaccggttagggttgcggtgttg 3593633  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
     |||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  3593634 gtgtttgtttaccttttgaagaaattaacaagtttattttttagatagttttattaacaactttacggacttgtgaaactt 3593714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 25253833 - 25254009
Alignment:
Q  20 gggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgt 119  Q
    ||||| ||||||| ||||||||||||| ||  |||||||||||||| ||||| ||| |||||||||||||| ||| ||| |||||||||||| |||||||    
T  25253833 gggagtacataccggttagggttgcgaatccaacggtggaaattcatatttcgacgccggtgattgcgacgtcaaatagggttgcggtggtggtgtttgt 25253932  T
Q  120 tgactttttgaagaaattaacttgt---ttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||| ||||||||||||||||| ||   ||||||||||||||||||||||||||||||| | |||||| ||||||||    
T  25253933 tgaccttttgaagaaattaactagtttattattttttagatagttttattaacaactttggaaacttgagaaacttg 25254009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 28403694 - 28403602
Alignment:
Q  101 ttgcggtggtgatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28403694 ttgcggtagtggtgtttgttgaccttttgaagaaattaactagtttattttttaaatagttttattaacaactttaggaacttgtgaaacttg 28403602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 32759674 - 32759572
Alignment:
Q  211 atggatggaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatt 305  Q
    |||||||||||||||||||||| || |||||||||    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32759674 atggatggaagacttatgaaacatatgattttgtgcgttaatttttgtattttgatgctaagtttagcataacgttttattatggtagtttggtataatt 32759575  T
Q  306 tgc 308  Q
    |||    
T  32759574 tgc 32759572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 19863274 - 19863360
Alignment:
Q  131 agaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg 217  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  19863274 agaaatttactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatg 19863360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 48966293 - 48966153
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||| ||||| |||||| |||| ||||||||||||||| ||||               |||| || ||||| ||||||||||||    
T  48966293 atgaacatgggagcacatactagttatggttgcaattccgacggtggaaattcaaattt---------------cgacaccgattagggttgcggtggtg 48966209  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttatta 167  Q
     ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  48966208 gtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatta 48966153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 8122498 - 8122557
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  8122498 tttgtattttgatgctaagttgagcataacgttttataatagtagtttggtataatttgc 8122557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 226322 - 226390
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  226322 ttttgaaaaaattaactagtttattttttagataggtttattaacaactttagaaacttatgaaacttg 226390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 2292824 - 2292764
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgca 309  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  2292824 tttgtattttgacgctaagttgaacataacgttttattatggtagtttggtatagtttgca 2292764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 48966067 - 48966008
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||    
T  48966067 tttgtattttgatgctaagttgaacataatgttttattatggtagtttagtataatttgc 48966008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 46042299 - 46042366
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    |||||| |||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||||||||    
T  46042299 ttttgacgaaattaactagtttattttttggataggtttattaacaactttagaaaattgtgaaactt 46042366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 19863441 - 19863499
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||  |||||||||    
T  19863441 tttgtattttgatgttaagttgagcataacattttattatggtagtttaatataatttg 19863499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3593782 - 3593845
Alignment:
Q  245 aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    ||| ||||||||||| || |||||||| ||| | ||||||||||||||||||||||||||||||    
T  3593782 aatttttgtattttggtgttaagttgaacattatgttttattatggtagtttggtataatttgc 3593845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 15927554 - 15927663
Alignment:
Q  202 gatggttttatggatggaagacttatgaaact-acgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    ||||||||||||||||||| |||||||||| | | |||||| ||    ||| ||| |||||||||||||| ||||| ||| | ||||||||| |||||||    
T  15927554 gatggttttatggatggaatacttatgaaatttatgattttttgcgttaatttttatattttgatgctaaattgagaata-cattttattatagtagttt 15927652  T
Q  297 ggtataatttg 307  Q
    |||||||||||    
T  15927653 ggtataatttg 15927663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 52182484 - 52182522
Alignment:
Q  150 ttttagatagttttattaacaactttaggaacttgtgaa 188  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  52182484 tttttgatagttttattaacaactttaggaacttgtgaa 52182522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 1243007 - 1242934
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||| ||||||||||||||    
T  1243007 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 1242934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 15928302 - 15928335
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  15928302 ggtaaactcgtacgagttctcgagtcgagtttac 15928335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 28403481 - 28403444
Alignment:
Q  269 tgagcataacgttttattatggtagtttggtataattt 306  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  28403481 tgagcataaagttttattatggtagtttggtataattt 28403444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 47370960 - 47370927
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  47370960 ggtaaactcgtacgagttctcgagtcgagtttac 47370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 49452450 - 49452417
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  49452450 ggtaaactcgtacgagttctcgagtcgagtttac 49452417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 49971081 - 49971048
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  49971081 ggtaaactcgtacgagttctcgagtcgagtttac 49971048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 28403768 - 28403700
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggt 80  Q
    |||||||||||||||||||  ||||||||||  ||||| |||  || ||||||||||||||||| ||||    
T  28403768 atgaacaggggagcacataaaagttagggttatgattccgactatgaaaattcagatttcaacgccggt 28403700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 2292658 - 2292615
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    ||||||||||||||||||| |||||||||||||| || ||||||    
T  2292658 ggtaaactcgtacgagttcccgagtcgagtttacctagacaaaa 2292615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 25254046 - 25254118
Alignment:
Q  220 agacttatgaaact-acgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttatta 287  Q
    |||||||||||||| | |||||||||    ||| ||||| |||||||||||||||||||||||| ||||||||    
T  25254046 agacttatgaaacttatgattttgtgcgctaatttttgttttttgatgctaagttgagcataacattttatta 25254118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Complemental strand, 27257648 - 27257613
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttactt 421  Q
    |||||||||||| |||||||||||||||||||||||    
T  27257648 ggtaaactcgtaagagttctcgagtcgagtttactt 27257613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 35193745 - 35193788
Alignment:
Q  387 gtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  35193745 gtaaactcgtacgagttctcgagtcgaatttatctaaacaaaac 35193788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 226446 - 226488
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggt 291  Q
    ||||||||||||||||||||||| ||||||  |||||||||||    
T  226446 tttgtattttgatgctaagttgaacataactctttattatggt 226488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 21447243 - 21447281
Alignment:
Q  253 tattttgatgctaagttgagcataacgttttattatggt 291  Q
    |||||||||||||||||||||||| || |||||||||||    
T  21447243 tattttgatgctaagttgagcatatcgctttattatggt 21447281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 28403529 - 28403495
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgtttt 283  Q
    ||||||||||||||||||||||||||||| |||||    
T  28403529 tttgtattttgatgctaagttgagcataaagtttt 28403495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 3583382 - 3583341
Alignment:
Q  388 taaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    ||||||| |||||||||||||||||||||||| ||| |||||    
T  3583382 taaactcttacgagttctcgagtcgagtttacctaagcaaaa 3583341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 25254251 - 25254284
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||| ||||||||||||||||||||    
T  25254251 ggtaaactcgtacaagttctcgagtcgagtttac 25254284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 41353816 - 41353889
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||  ||||||||||||||    
T  41353816 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 41353889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 2292934 - 2292885
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaacttta 176  Q
    ||||||||||||||| |||||||||||||  ||||  |||||||||||||||    
T  2292934 ttttgaagaaattaatttgtttattttttgtatag--ttattaacaacttta 2292885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 42303785 - 42303741
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||| || |||||||||||||||||| ||||| ||||||||||    
T  42303785 ggtaaagtcatacgagttctcgagtcgaatttacctaaacaaaac 42303741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 49236396 - 49236364
Alignment:
Q  387 gtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||| |||||||||||||||    
T  49236396 gtaaactcgtacgagttttcgagtcgagtttac 49236364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 419
Target Start/End: Original strand, 51903560 - 51903592
Alignment:
Q  387 gtaaactcgtacgagttctcgagtcgagtttac 419  Q
    |||||||||||||||||||||||||||| ||||    
T  51903560 gtaaactcgtacgagttctcgagtcgagcttac 51903592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 33139094 - 33139393
Alignment:
Q  14 gaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgat 113  Q
    ||||| ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||| ||  || ||||||| |||||  |||| |||||||||||| |    
T  33139094 gaacatgggagcagataccaattagggttgtgattccgacggtggaaattcagatttcgactccgatgattgcaacgccggttagggttgcggtggtggt 33139193  T
Q  114 gtttgttgactttttgaagaaattaacttgttta-ttttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttat 212  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  33139194 gtttgttgaccttttgaagaaattaactagtttatttttttagatagttttattaacaactttaggaacttgtgaaacttgctattttggatggttttat 33139293  T
Q  213 ggatgga----------agacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttg 297  Q
    | |||||          ||||||||||||| || |||||||||    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33139294 gcatggattaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctacgttgagcataacgttttattatggtagtttg 33139393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 24966293 - 24965984
Alignment:
Q  14 gaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgat 113  Q
    ||||| ||||| |||||||| ||||||||||||||  ||||||||||| | ||||||| ||| ||| |||||| | |||  |||| |||||||||||| |    
T  24966293 gaacatgggagtacataccaattagggttgcgatttcgacggtggaaacttagatttcgacgccggagattgcaatgccggttagggttgcggtggtggt 24966194  T
Q  114 gtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatg 213  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  24966193 gtttgttgaccttttgaagaaattaactagtttgttttttagatagttttattaacaactttaggaacttgtgaaacttgtttttttggatggttttatg 24966094  T
Q  214 gatg-----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttg 297  Q
    ||||             ||||||||||||| || |||||||||    ||| || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  24966093 gatgatttaaacttaagagacttatgaaacttatgattttgtgcgttaattttggtattttgatgttaagttgagcataacgttttattatggtagtttg 24965994  T
Q  298 gtataatttg 307  Q
    ||||||||||    
T  24965993 gtataatttg 24965984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 29509864 - 29509685
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||| ||||||||| |||||| ||||  |||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||    
T  29509864 atgaacatgggagcacgtaccagttatggttgc-attccaacggtggaaattcagagttcaacgccggtgattgcgacgccagttagggttgcggtggtg 29509766  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
     ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  29509765 gtgtttgttgaccttttgaagaaattaactggtttattttttagatagttttattaacaacttaaggaaattgtgaaactt 29509685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 32890174 - 32890353
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||||||| |||||| ||||  |||||||||||||| ||||| ||||||||||||||||||||  |||| ||||||||||||    
T  32890174 atgaacatgggagcacataccagttatggttgc-attccaacggtggaaattcatatttcgacgtcggtgattgcgacgccggttagggttgcggtggtg 32890272  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
     ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||    
T  32890273 gtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattttgaaactt 32890353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 46862734 - 46862437
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||               ||| |||||||||||     
T  46862734 atgaacaggggagcacatactagttagggttgcgattccgacggtagaaattcagatttcgacgtcggt---------------tagggttgcggtggta 46862650  T
Q  112 atgtttgttgac-tttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttt 210  Q
     ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||       ||||| ||||    
T  46862649 gtgtttgttgacctttttgaagaaattaactagtttattttttagatagttttattaacaactttaagaacttgtgaaacttgcttttttggatgatttt 46862550  T
Q  211 atggatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtt 295  Q
    |||||||            ||||||||||||| || |||||||||    ||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  46862549 atggatgacttaaacttagagacttatgaaacttatgattttgtgtgttaatctttgtattttgatgctaagttgagtataatgttttattatggtagtt 46862450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 46287016 - 46287162
Alignment:
Q  20 gggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgt 119  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||| ||||| ||  | |||||||||||| |  |||| ||||||||||||||||||||    
T  46287016 gggagcacataccagttagggttgcgattccaacgatggaaattcaaatttcgactcccgtgattgcgacgtcggttagggttgcggtggtgatgtttgt 46287115  T
Q  120 tgactttttgaagaaattaacttgttta-ttttttagatagttttat 165  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  46287116 tgaccttttgaagaaattaactagtttatttttttagatagttttat 46287162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 50517495 - 50517589
Alignment:
Q  95 ttagagttgcggtggtgatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaa 189  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||    
T  50517495 ttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatggatttattaacaactttaggaacttgtgaaa 50517589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 35518283 - 35518147
Alignment:
Q  26 acataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttgactt 125  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||               ||| |||||||||||| | ||||||||| |    
T  35518283 acataccagttagggttgcgatttcgaccgtggaaattcagatttcaacgtcggt---------------tagggttgcggtggtggtatttgttgacct 35518199  T
Q  126 tttgaagaaattaacttgtttattttttagatagttttattaacaactttag 177  Q
    |||||||||||||||| |||||||| ||  ||||||||||||||||||||||    
T  35518198 tttgaagaaattaactagtttatttattgaatagttttattaacaactttag 35518147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 29509613 - 29509554
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29509613 tttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttgc 29509554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 32890426 - 32890484
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32890426 tttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttg 32890484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 12754822 - 12754915
Alignment:
Q  220 agacttatgaaact-acgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||||||| | |||||||||    ||| |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||    
T  12754822 agacttatgaaacttatgattttgtgcgttaatttttgtattttgatgttaggttgagcgtaacgttttattatggtagtttggtataatttgc 12754915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 14334862 - 14334921
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  14334862 tttgtattttgatgcttagttgagcataacgttttataatggtagtttgatataatttgc 14334921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 26490942 - 26490874
Alignment:
Q  149 tttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  26490942 tttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatg 26490874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 53574109 - 53574002
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||| |||| |||||||||||||||  ||||| |||||||||||||| |||||| || | | ||||||| |||||  |||| ||||||||||||    
T  53574109 atgaacagggtagcatataccagttagggttctgattccgacggtggaaattccgatttcgacattgttgattgctacgccggttag-gttgcggtggtg 53574011  T
Q  112 atgtttgtt 120  Q
     ||||||||    
T  53574010 gtgtttgtt 53574002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 26955688 - 26955747
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttg 184  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||    
T  26955688 ttttgaagaaattaaattgtttattttttggatagttttattaaaaactttagaaacttg 26955747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 26955804 - 26955853
Alignment:
Q  253 tattttgatgctaagttgagcataacgttttattatggtagtttggtata 302  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  26955804 tattttgatgctaagttgagcataatgttttattatggtagtttgatata 26955853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 25842673 - 25842621
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttag 177  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  25842673 ttttgaagaaattaactagtttattttttggatagctttattaacaactttag 25842621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 33141034 - 33141078
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  33141034 ggtaaactcgtacgagttctcgagtcgagtttacctaaacaaaac 33141078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 40317362 - 40317294
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||||||||||||| ||| |||||||  |||| |||||||| |||||||| ||||| |||||||||    
T  40317362 ttttgaagaaattaactagttcattttttgaatagatttattaataactttagaaacttctgaaacttg 40317294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 40327436 - 40327368
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||||||||||||| ||| |||||||  |||| |||||||| |||||||| ||||| |||||||||    
T  40327436 ttttgaagaaattaactagttcattttttgaatagatttattaataactttagaaacttctgaaacttg 40327368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 29509452 - 29509409
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  29509452 ggtaaactcgtacgagttctcgagtcgagtttacctagacaaaa 29509409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 50517639 - 50517690
Alignment:
Q  245 aatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    ||| |||||||||||||| ||||||||||||||  |||||||||||||||||    
T  50517639 aatttttgtattttgatgttaagttgagcataatattttattatggtagttt 50517690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 22480177 - 22480223
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtt 295  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  22480177 tttgtattttgatgataagttgagcataatgttttattacggtagtt 22480223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 24454025 - 24454071
Alignment:
Q  147 attttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||    
T  24454025 attttttatatagttttattaacaacgttaggaacgtgtgaaacttg 24454071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 871954 - 871995
Alignment:
Q  148 ttttttagatagttttattaacaactttaggaacttgtgaaa 189  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  871954 ttttttggatagttttattaacaaatttaggaacttgtgaaa 871995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 872203 - 872236
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  872203 ggtaaactcgtacgagttctcgagtcgagtttac 872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 12755019 - 12755063
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||    
T  12755019 ggtaaactcgtacgaggtctcgagtcgagtttacctaagcaaaac 12755063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 26973032 - 26973076
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||    
T  26973032 ggtaaactcgtacgagttctcgagtcaaatttacttaagcaaaac 26973076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 32890587 - 32890631
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||||||||||||| || |||||||||||| ||||||||||    
T  32890587 ggtaaactcgtacgagttatcaagtcgagtttacctaaacaaaac 32890631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 17503304 - 17503261
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||    
T  17503304 ggtaaactcatacgagttctcgagtcgagtttacctaagcaaaa 17503261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 35518069 - 35518026
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggta 292  Q
    ||||||||||||||||||||||| |||||  |||||||||||||    
T  35518069 tttgtattttgatgctaagttgaacataatattttattatggta 35518026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 4511634 - 4511593
Alignment:
Q  135 attaacttgtttattttttagatagttttattaacaacttta 176  Q
    ||||||| |||||||||||||||| |||||||||||| ||||    
T  4511634 attaactagtttattttttagataattttattaacaaattta 4511593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 29469538 - 29469611
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||  ||||||||||||||    
T  29469538 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 29469611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 26490667 - 26490623
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||||||| |||||||||| |||||||||| |||| |||||    
T  26490667 ggtaaactcgtatgagttctcgaatcgagtttacctaaataaaac 26490623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 29469832 - 29469876
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    ||||||||||||||||||  |||||||||||||| |||| |||||    
T  29469832 ggtaaactcgtacgagtttacgagtcgagtttacctaaataaaac 29469876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 42937298 - 42937234
Alignment:
Q  128 tgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||||||||| ||  ||| |||||| ||||||||||||  ||| ||||| ||||||||||||||    
T  42937298 tgaagaaattacctaatttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 42937234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 31846967 - 31846665
Alignment:
Q  15 aacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatg 114  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| | |||||||||||||   |||| |||||||||||| ||    
T  31846967 aacaggggagcacataccagttagggttgcgattccgacgatggaaatttagatttcaacgccagtgattgcgacgcttgttagggttgcggtggtggtg 31846868  T
Q  115 tttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatgg 214  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||        |||||||||||||    
T  31846867 tttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgcaaaacttgcttttttagatggttttatgg 31846768  T
Q  215 atg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggt 299  Q
    |||            ||||||||||||| || |||||||||     || |||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  31846767 atgacttaaacgtagagacttatgaaacttatgattttgtgcgttcatttttgtattttaatactaagttgagcataacgtttcattatggtagtttggt 31846668  T
Q  300 ata 302  Q
    |||    
T  31846667 ata 31846665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 38295524 - 38295228
Alignment:
Q  15 aacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatg 114  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| | ||||||||||| ||||||  |||| |||||||||||| ||    
T  38295524 aacaggggagcacataccagttagggttgcgattccgactgtggaaattcatatttcgatgtcggtgattgtgacgccggttagggttgcggtggtggtg 38295425  T
Q  115 tttgttga-ctttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatg 213  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||        |||||| || |      
T  38295424 tttgctgacctttttgaagaaattaactagtttattttttagatagttttattagcaactttaggaatttgtgaaactttcttttttggatggcttaa-- 38295327  T
Q  214 gatggaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
      |  |||||||||||||| || |||||||||    ||| ||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  38295326 acttaaagacttatgaaacttatgattttgtgcgttaatttttgtattacgatgttaagttgagcataatgttttattatggtagtttggtataatttg 38295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 41 - 308
Target Start/End: Original strand, 9731271 - 9731552
Alignment:
Q  41 ttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttgactttttgaagaaattaac 140  Q
    ||||||||| |||| |||||||||||||||  |||||| ||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||||     
T  9731271 ttgcgattccgacgatggaaattcagattttgacgtcgatgattgcgacgccgattagggttgcggtggtggtgtttgttgaccttttgaagaaattaat 9731370  T
Q  141 ttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg----------gaagacttatgaa 230  Q
    | ||||||||||||||||||||||||||||||||||| || ||||||||||||       |||||||||||||||||           |||||||| |||    
T  9731371 tagtttattttttagatagttttattaacaactttagtaatttgtgaaacttg-ttttttggatggttttatggatgacttaaacttaaagacttacgaa 9731469  T
Q  231 ac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    || || |||||||||    ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  9731470 acttatgattttgtgcattaatttttgtattttgatgccaagttgagcataacattttattatggtagtttggtataatttgc 9731552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 40829931 - 40830241
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| |||  | ||||||||||||   |||| ||||| |||||     
T  40829931 atgaacaggggagcatgtaccagttagggttgcgattttgacggtggaaattcagatttccacgctgatgattgcgacgcgg-ttagggttgcagtggta 40830029  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     ||||||||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||       ||||| |||||    
T  40830030 gtgtttgttgaccttttgaagaaattaactagtttatgttttagatggttttattaacaactataggaacttgtgaaacttgcttttttggatgatttta 40830129  T
Q  212 tggatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    ||||||            ||| ||||||||| || |||||||||    ||| |||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  40830130 tggatgacttaaacttagagatttatgaaacttatgattttgtgcgctaatttttgaattttgatgctaagttgagcataatgttttattatgatagttt 40830229  T
Q  297 ggtataatttgc 308  Q
    ||||||||||||    
T  40830230 ggtataatttgc 40830241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 34342549 - 34342852
Alignment:
Q  20 gggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgt 119  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||| |||  ||| ||||||||| |  |||| |||| ||||||| |||||||    
T  34342549 gggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgacgctggtaattgcgacgtcggttagggttgtggtggtggtgtttgt 34342648  T
Q  120 tgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatgg- 218  Q
    |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||       |||| ||||||| |||||     
T  34342649 tgaccttttcaagaaattaactagtttattttttagatagttttattaacaactttgaaaacttgtgaaacttgctattttggatagttttatagatggc 34342748  T
Q  219 ---------aagacttatgaaa-ctacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattat-ggtagtttggtataa 303  Q
              ||||||||||||  || |||||||||    ||| ||||||||||||||||||||||| |||||  ||||||||| ||||||||| |||||    
T  34342749 ttaaacttagagacttatgaaatttatgattttgtgtgttaatttttgtattttgatgctaagttgaacataatattttattatgggtagtttgttataa 34342848  T
Q  304 tttg 307  Q
    ||||    
T  34342849 tttg 34342852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 18727445 - 18727264
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| | |||||||||||| ||||||||||||||| || || | |||||  |||| | ||  || |||||| |||||   || | ||||||||||||    
T  18727445 atgaacaagagagcacataccaattagggttgcgattccgatggggtaaatttcgattgcgacaccgatgattgtgacgctggttggggttgcggtggtg 18727346  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
     ||||||  ||| ||||||||||||||||| ||| |||||||  ||||||||||||||||||||| ||||||||||| ||||    
T  18727345 gtgtttgacgaccttttgaagaaattaactagttgattttttgaatagttttattaacaactttacgaacttgtgaaccttg 18727264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 32294265 - 32294333
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32294265 ttttgaagaaattaactagtttattttttggatagttttattaacaactttaggaacttgtgaaacttg 32294333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 18727169 - 18727114
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataat 304  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  18727169 tttgtattttgatgctaagttgaacataacgttttattatggtagtttgatataat 18727114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 30850906 - 30850953
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30850906 tttgtattttgatgctaagttgagcataacgttttattatggtagttt 30850953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 2308139 - 2308048
Alignment:
Q  220 agacttatgaaact-acgattttgtga----atatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    |||||||||||||| | ||||||||||    || |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  2308139 agacttatgaaacttatgattttgtgagttaatttttgtaatttgatgctaagtgtagcataacgttttattatggtagtttggtataattt 2308048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 42242348 - 42242406
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  42242348 tttgtattttgatgataagttgagcataaggttttattatggtagtttagtataatttg 42242406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 24026205 - 24026257
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttag 177  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  24026205 ttttgaagaaattaactagtttattttttggatagttttattaacaactttag 24026257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 37810581 - 37810514
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||  ||| ||||||||||    
T  37810581 ttttgaagaaattaactagtttattttttggataggtttattaacaactttatcaacatgtgaaactt 37810514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 30850794 - 30850853
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttg 184  Q
    ||||||| ||||||||||| ||||||| | ||||||||||||||||||||||| ||||||    
T  30850794 ttttgaataaattaacttggttattttatggatagttttattaacaactttagaaacttg 30850853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 2103815 - 2103873
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||| ||||    
T  2103815 tttgtattttgatgctaagttgaacataatgttttattatggtggtttgatatactttg 2103873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 3858367 - 3858322
Alignment:
Q  148 ttttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  3858367 ttttttggatagttttattaacaactataggaacttgtgaaacttg 3858322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 37654948 - 37654888
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgca 309  Q
    |||||||||||||| ||||||||||||||  |||||| ||||| |||||||||| ||||||    
T  37654948 tttgtattttgatgttaagttgagcataatattttataatggtggtttggtatactttgca 37654888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 43618159 - 43618202
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  43618159 ggtaaactcgtacgagttctcgagtcgagtttacctaagcaaaa 43618202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 2308212 - 2308178
Alignment:
Q  159 gttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||||||||||||||||||||||||||||||    
T  2308212 gttttattaacaactttaggaacttgtgaaacttg 2308178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 9731661 - 9731694
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  9731661 ggtaaactcgtacgagttctcgagtcgagtttac 9731694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 15926489 - 15926526
Alignment:
Q  156 atagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||||||||||||||||||||| |||||||||||    
T  15926489 atagttttattaacaactttaggaacatgtgaaacttg 15926526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 18727008 - 18726975
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  18727008 ggtaaactcgtacgagttctcgagtcgagtttac 18726975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 18899629 - 18899556
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||| ||||||||||||||    
T  18899629 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 18899556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 43617911 - 43617945
Alignment:
Q  159 gttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||||||||||||||| |||||||||||||||    
T  43617911 gttttattaacaactttagaaacttgtgaaacttg 43617945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 31846557 - 31846524
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||| ||||||||||||    
T  31846557 ggtaaactcgtacgagttctcaagtcgagtttac 31846524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 32241877 - 32241844
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    |||||| |||||||||||||||||||||||||||    
T  32241877 ggtaaattcgtacgagttctcgagtcgagtttac 32241844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 32294495 - 32294459
Alignment:
Q  156 atagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||||||||||| |||||||||||||||||||||    
T  32294495 atagttttattaacaa-tttaggaacttgtgaaacttg 32294459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Original strand, 42242513 - 42242542
Alignment:
Q  390 aactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||    
T  42242513 aactcgtacgagttctcgagtcgagtttac 42242542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 32294731 - 32294767
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttactta 422  Q
    ||||||||||||||||||||| | |||||||||||||    
T  32294731 ggtaaactcgtacgagttctcaactcgagtttactta 32294767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 34342954 - 34342998
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||| ||||||||||||| ||||||||||||| ||| ||||||    
T  34342954 ggtaaattcgtacgagttcttgagtcgagtttacctaagcaaaac 34342998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 40830342 - 40830386
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||| |||||||||||||  |||||||||||||||| ||||||    
T  40830342 ggtaaattcgtacgagttctgaagtcgagtttacttaagcaaaac 40830386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 4962513 - 4962204
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||  |||| || ||| |||||||||||    |||| ||||||||||||    
T  4962513 atgaacaggggagcacatatcagttagggctgcgattcagacggtggaaattcatgtttcgacatcgatgattgcgacgttggttagggttgcggtggtg 4962414  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     |||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||    
T  4962413 gtgtttgttaaccttttgaagaaattaactagtttattttttagatagttttattgacaactttaggaacttgtgaaacttgcttttttggatggtttta 4962314  T
Q  212 tggatgg----------aagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    |||| ||           |||||| |||||| || |||||||||    ||| ||||||||||||||||||||||| |||||| |||||||| ||||||||    
T  4962313 tggaaggcttaaacttagagacttgtgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgaacataacattttattacggtagttt 4962214  T
Q  297 ggtataattt 306  Q
    ||||||||||    
T  4962213 ggtataattt 4962204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 7437310 - 7437051
Alignment:
Q  53 cggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttgactttttgaagaaattaacttgtttattttt 152  Q
    ||||||||||||||||||| ||||| |||||||||||||   ||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  7437310 cggtggaaattcagatttcgacgtcagtgattgcgacgctggttagagttgcggtggtggtgtttgtttactttttgaagtaattaactagtttattttt 7437211  T
Q  153 tagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatgg--aagacttatgaaactacgattttgtg----aa 246  Q
    ||||||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||   | |||||   |  || |||||||||    ||    
T  7437210 tagatagttttattaacaactttaggaacttgttaaacttg-ttttttggatggttttatggatggcttaaacttaaagacttatgattttgtgcgttaa 7437112  T
Q  247 tatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  7437111 tttttgtattttgatgctaagttaagcataacgttttattatggtagtttgatataatttg 7437051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 33693563 - 33693877
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||| ||||||||||||||| |||||  |||  ||||| | ||||||||||||||| | | |||||||||||||| | ||  ||||| ||||||    
T  33693563 atgaacagggaagcacataccagttatggttgtaatttcgacggggaaaattcagatttcaatgcctgtgattgcgacgccgactacggttgcagtggtg 33693662  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  33693663 gtgtttgttgaccttttgaagaaattaagtagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggtttta 33693762  T
Q  212 tggatgg----------aagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcata---acgttttattatggtag 293  Q
    |||||||           ||||||||||||| || |||||||||    ||| |||||||||||||| ||||||||| |||   ||||||||||||| |||    
T  33693763 tggatggcttaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgttaagttgagtataacgacgttttattatgatag 33693862  T
Q  294 tttggtataatttgc 308  Q
    |||||||||||||||    
T  33693863 tttggtataatttgc 33693877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 43173200 - 43173502
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||| ||||||||||||||||||||| |||||||||| |||| | |||| ||| ||||| |||  ||||||||||| |||  |||| ||||||| || |    
T  43173200 atgaataggggagcacataccagttagagttgcgattccgacgatagaaactcatatttcgacgctggtgattgcgatgccggttagggttgcggcggcg 43173299  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||||    
T  43173300 gtgtttgttgaccttttgaagaaattaactaatttattttttagatagttttattaacaactttaggaactggtgaaacttgcttttttggatggtttta 43173399  T
Q  212 tggatg--gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataat 304  Q
    ||||||    | ||||| ||||| || |||||||||    ||| || ||||||||||| |||||||||||||||||||||| ||||||||||| |||| |    
T  43173400 tggatgacttaaactta-gaaacttatgattttgtgcgttaattttcgtattttgatgttaagttgagcataacgttttatcatggtagtttgttatatt 43173498  T
Q  305 ttgc 308  Q
    ||||    
T  43173499 ttgc 43173502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 306
Target Start/End: Original strand, 49458679 - 49458972
Alignment:
Q  23 agcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttga 122  Q
    ||||||||||||||||||||||      ||||||||||||||| || || ||||||||||||||| ||||  |||| |||| ||||||  ||||||||||    
T  49458679 agcacataccagttagggttgcc-----gacggtggaaattcatatatcgacgtcggtgattgcgtcgccggttagggttgtggtggtagtgtttgttga 49458773  T
Q  123 ctttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg----- 217  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||         
T  49458774 ccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgattttttggatggttttatggatgactta 49458873  T
Q  218 -----gaagacttatgaaa-ctacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
           ||||||||||||  || |||||||||    ||| ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  49458874 aacttagagacttatgaaatttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttactatggtagtttgatataattt 49458972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 21386281 - 21385982
Alignment:
Q  22 gagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttg 121  Q
    ||||||||||||||||||||| |||||| ||||| |||||||| |||| | ||||||||| |   || |    |||| |||||||||||| |||||| ||    
T  21386281 gagcacataccagttagggttacgattccgacgggggaaattccgattgcgacgtcggtgttaaggatgttggttagggttgcggtggtggtgtttgatg 21386182  T
Q  122 actttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg---- 217  Q
    || ||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||       |||||||||||||||||        
T  21386181 accttttgaagaaattaactagtttattttttggacagttttattaacaactttacgaacttgtgaaacttgctttttcggatggttttatggatgactt 21386082  T
Q  218 ------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
            ||||||||||||| ||  ||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21386081 aaacttagagacttatgaaacttattattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 21385982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 32766504 - 32766562
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  32766504 tttgtattttgatgttaagttgagcataacgttttattatggtagattagtataatttg 32766562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 16155449 - 16155526
Alignment:
Q  15 aacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgcc 92  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||| ||  |||||||| |||||||    
T  16155449 aacaggggagcacataccagttagggttgcaattccgacagtggaaatttagatttcgacaccggtgattacgacgcc 16155526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 30238251 - 30238191
Alignment:
Q  133 aaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| | ||| |||||||||||    
T  30238251 aaattaactagtttattttttggataggtttattaacaacttttgaaacctgtgaaacttg 30238191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 1666396 - 1666487
Alignment:
Q  220 agacttatgaaact-acgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    |||||||||||||| | |||||||||    ||| ||||||||||||||||||||| |||||||  |||||| ||| ||||||| ||||||||    
T  1666396 agacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttaagcataatattttataatgatagtttgttataattt 1666487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 7436948 - 7436915
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  7436948 ggtaaactcgtacgagttctcgagtcgagtttac 7436915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 21718404 - 21718359
Alignment:
Q  148 ttttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||    
T  21718404 ttttttatatagttttattaacaattttaagaacttgtgaaacttg 21718359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 7667443 - 7667487
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||    
T  7667443 ggtaaacttgtactagttctcgagtcgagtttacttaagcaaaac 7667487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 29690982 - 29691026
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaac 169  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  29690982 ttttgaaaaaattaacttgtttattttttggataggtttattaac 29691026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Original strand, 25050275 - 25050310
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttactt 421  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25050275 ggtaaactcgtccgagttctcgagtcgagtttactt 25050310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 43173605 - 43173648
Alignment:
Q  387 gtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||| |||||||||||||||||||||||| |||| |||||    
T  43173605 gtaaactcatacgagttctcgagtcgagtttacctaaataaaac 43173648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 24064006 - 24064039
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||| ||||||||||||||||||||||||    
T  24064006 ggtaaactcatacgagttctcgagtcgagtttac 24064039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 25050034 - 25050071
Alignment:
Q  156 atagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  25050034 atagttttattaacacctttgggaacttgtgaaacttg 25050071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 32766628 - 32766661
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||| ||||||||||||    
T  32766628 ggtaaactcgtacgagttctcaagtcgagtttac 32766661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 33693979 - 33694012
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||| ||||||||    
T  33693979 ggtaaactcgtacgagttctcgagttgagtttac 33694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 53836333 - 53836406
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||  ||||||||||||||    
T  53836333 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 53836406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 30238139 - 30238099
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatg 289  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  30238139 tttgtattttgatgctaagttgaacataactctttattatg 30238099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 53836627 - 53836659
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagttta 418  Q
    |||||||||||||||||| ||||||||||||||    
T  53836627 ggtaaactcgtacgagttttcgagtcgagttta 53836659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 42423503 - 42423682
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| | |||||||||||||||| |||||| ||||  |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||    
T  42423503 atgaacatgagagcacataccagttatggttgc-attccaacggtggaaattcagatttcgacgccggtgattgcgacgccagttagggttgcggtggtg 42423601  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
     |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42423602 gtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 42423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 95 - 307
Target Start/End: Complemental strand, 3007529 - 3007313
Alignment:
Q  95 ttagagttgcggtggtgatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgn 194  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||      
T  3007529 ttagagttgcggtggtgttgtttgttgaccatttgaagaaattaactagtttattttttatatagttttattaacaactttatgaacttgtaaaactt-t 3007431  T
Q  195 nnnnnnggatggttttatggatggaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatg 289  Q
          |||||||| ||||||||||||||||||||||| ||  ||||||||    ||| |||||||||||||||||||||||||||||||||||||||||    
T  3007430 ttttttggatggttctatggatggaagacttatgaaacttataattttgtgcattaatttttgtattttgatgctaagttgagcataacgttttattatg 3007331  T
Q  290 gtagtttggtataatttg 307  Q
     |||||||||||||||||    
T  3007330 atagtttggtataatttg 3007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 12522208 - 12521900
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||| || ||||||||  | | ||| | ||||||| ||||    
T  12522208 atgaacaggggagcacataccagttagggttgcgattccggcggtggaaattcagattgcgacgccgatgattgcgttgtcgatttgggttgcggcggtg 12522109  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     ||||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||       || | | ||||    
T  12522108 gtgtttgttgaccttttgaagaaattaactagtttatttttttgatagttttaataacaactttaggaacttgtgaaacatgcttttttgggttgattta 12522009  T
Q  212 tggatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    ||||||           |||||||||||||| || ||||| |||    | | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  12522008 tggatgacttaaacttaaagacttatgaaacttatgatttggtgcgttagtttttgtattttgatgctaagttgagcataatattttattatggtagttt 12521909  T
Q  297 ggtataatt 305  Q
    |||||||||    
T  12521908 ggtataatt 12521900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 304
Target Start/End: Complemental strand, 12737875 - 12737580
Alignment:
Q  23 agcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttga 122  Q
    ||||| ||| ||||||||||||||||| ||||||| ||||||||||||| | | || |||||||||||    |||| ||||| |||||| ||||||||||    
T  12737875 agcacgtactagttagggttgcgattccgacggtgaaaattcagatttcgatgccgatgattgcgacgttggttagggttgcagtggtggtgtttgttga 12737776  T
Q  123 ctttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatgg---- 218  Q
    | ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||| ||        
T  12737775 ccttttgaagaaattaactagtttatttttaagatagtattattaacaactttaggaacttgtgaaacttgcttttttggatggttttatggaaggttta 12737676  T
Q  219 ------aagacttatgaaa-ctacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataat 304  Q
           ||||||||||||  || |||||||||    ||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  12737675 aacttagagacttatgaaatttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattagggtag-ttggtataat 12737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 44977029 - 44977337
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||| ||   | |||  ||||| ||| |||| |||| ||| |||    
T  44977029 atgaacaggggagcacatacctgttagagttacgattctgacggtgaaaattcagatttcgacacggatgagagcgacaccagttagggttgtggtagtg 44977128  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttta 211  Q
     |||||||  || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||    
T  44977129 ctgtttgta-accttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttgaatggtttta 44977227  T
Q  212 tggatg----ga------agacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagttt 296  Q
    ||||||    ||      ||||||||||||| || |||||||||    ||| |||  ||||||||||||| |||| |||||| ||||||||| |||||||    
T  44977228 tggatgacttgaacttagagacttatgaaacttatgattttgtgcgttaatttttaaattttgatgctaaattgaacataacattttattatagtagttt 44977327  T
Q  297 ggtataattt 306  Q
    ||||||||||    
T  44977328 ggtataattt 44977337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 45 - 308
Target Start/End: Complemental strand, 27974737 - 27974458
Alignment:
Q  45 gattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttgactttttgaagaaattaacttgt 144  Q
    ||||| ||||||||||||| ||||| | ||| |||||||||||| |||  ||||  || |||||||| |||||||| || ||||||||||||||||| ||    
T  27974737 gattccgacggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagt 27974638  T
Q  145 ttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg----------gaagac-ttatgaaac- 232  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||       |||||||||||||||||            |||| |||||||||     
T  27974637 ttattttttaggtagttttgtcaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatgacttaaacttagagacattatgaaact 27974538  T
Q  233 tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    || |||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27974537 tatgattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttggtgtaatttgc 27974458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 45 - 308
Target Start/End: Complemental strand, 28032006 - 28031727
Alignment:
Q  45 gattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttgactttttgaagaaattaacttgt 144  Q
    ||||| ||||||||||||| ||||| | ||| |||||||||||| |||  ||||  || |||||||| |||||||| || ||||||||||||||||| ||    
T  28032006 gattccgacggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagt 28031907  T
Q  145 ttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg----------gaagac-ttatgaaac- 232  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||       |||||||||||||||||            |||| |||||||||     
T  28031906 ttattttttaggtagttttgtcaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatgacttaaacttagagacattatgaaact 28031807  T
Q  233 tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    || |||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28031806 tatgattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttggtgtaatttgc 28031727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 27878414 - 27878233
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||| | |||||||  |||| ||  ||||||||| ||||||| ||| |||||||||  | | |  |||| |||||| |||||    
T  27878414 atgaacatgggagcacataccaatcagggttgtcattccgaaagtggaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtg 27878315  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
     ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27878314 gtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattatcaactttaggaacttgtgaaacttg 27878233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 28018595 - 28018414
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||| | |||||||  |||| ||  ||||||||| ||||||| ||| |||||||||  | | |  |||| |||||| |||||    
T  28018595 atgaacatgggagcacataccaatcagggttgtcattccgaaagtggaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtg 28018496  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
     ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28018495 gtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattatcaactttaggaacttgtgaaacttg 28018414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 8029640 - 8029356
Alignment:
Q  11 tatgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggt 110  Q
    |||||||||||||||||||||||||||  |||||||||| |||||| |||||||| ||||| ||| ||||               ||| |||| ||||||    
T  8029640 tatgaacaggggagcacataccagttaatgttgcgattccgacggtagaaattcatatttccacgccggt---------------tagggttgtggtggt 8029556  T
Q  111 gatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttt 210  Q
      |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||       ||||||||||    
T  8029555 agtgtttgttgacttttt-aagaaattaactagtttattttttagatagttttattaacaattttaggaacttgtgaaacttg-ctttttggatggtttt 8029458  T
Q  211 atggatg----------gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtt 295  Q
    |||||||            ||||||||||||| || |||||||||    ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  8029457 atggatgacttaaacttagagacttatgaaacttatgattttgtgcgttaatctttgtattttgatgctaagttgagcataatgttttattatggtagtt 8029358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 27915358 - 27915177
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||| | ||||||| ||||| ||  | | ||||| ||||||| ||| |||||||||  | | |  |||| |||||| |||||    
T  27915358 atgaacatgggagcacataccaatcagggttgtgattccgaaagcgaaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtg 27915259  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
     ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27915258 gtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaattttaggaacttgtgaaacttg 27915177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 27961777 - 27961596
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| |||||||||||||| | ||||||| ||||| ||  | | ||||| ||||||| ||| |||||||||  | | |  |||| |||||| |||||    
T  27961777 atgaacatgggagcacataccaatcagggttgtgattccgaaagcgaaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtg 27961678  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
     ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27961677 gtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaattttaggaacttgtgaaacttg 27961596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 27869659 - 27869562
Alignment:
Q  95 ttagagttgcggtggtgatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27869659 ttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttt-agatagttttattaacaactttaggaacttgtgaaacttg 27869562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 6387901 - 6387748
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| | |||||||||  ||||||||||||||||  || || |||||||| |||| ||||| |||||||||||| |    |||| ||||||||||||    
T  6387901 atgaacatgagagcacatattagttagggttgcgatttcgatgggggaaattccgattgcaacgccggtgattgcgatgttggttagggttgcggtggtg 6387802  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttat 165  Q
     |||||| ||||||||||||||||||| |  ||||||||||| |||||||||||    
T  6387801 gtgtttgatgactttttgaagaaattagccagtttattttttggatagttttat 6387748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 306
Target Start/End: Original strand, 24082597 - 24082796
Alignment:
Q  113 tgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttat 212  Q
    |||||| |||| || |||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||       ||||  ||||||    
T  24082597 tgtttgatgaccttctgaagaaattaagtagtttattttttagatagtttaattaacaactttacgaacttgtgaaacttgcttttttggattattttat 24082696  T
Q  213 ggatgg--aagacttatgaaac-tacgatttt----gtgaatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatt 305  Q
    ||||||   | ||||| || || || ||||||    || ||| |||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  24082697 ggatggcttaaactta-gagacttatgattttgcgcgtaaatttttgtactttgatgctaaattgaacataacgttttattatgatagtttggtataatt 24082795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 18984880 - 18984937
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  18984880 tttgtattttgatgctaagttgagcaaaatgttttattatggtagtttggtataattt 18984937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 308
Target Start/End: Original strand, 41394306 - 41394472
Alignment:
Q  157 tagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatgga----------agacttatgaaact-acgattttgtg- 244  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||||            |||||||||||||| | |||||||||     
T  41394306 tagttttattaacaactttaggaacttgtgaaacttgcttttttagatggttttatggatgacttaagtttatagacttatgaaacttatgattttgtgc 41394405  T
Q  245 ---aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
       ||| |||||| |||||||||||||| | || ||| |||||||||||||||||||||||||||||    
T  41394406 attaatttttgtaatttgatgctaagttaaacacaacattttattatggtagtttggtataatttgc 41394472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 42423755 - 42423812
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  42423755 tttgtattttgatgttaagttgaacataatgttttattatggtagtttggtataattt 42423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 27869482 - 27869430
Alignment:
Q  255 ttttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27869482 ttttgatgctaagttgagcataacgttttattgtggtaatttggtataatttg 27869430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 33177559 - 33177492
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  33177559 ttttgaaaaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaactt 33177492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 27974792 - 27974734
Alignment:
Q  11 tatgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatt 69  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  27974792 tatgaacatgggagcacataccaattagggttgtgattctgacggtggaaatttagatt 27974734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 28032061 - 28032003
Alignment:
Q  11 tatgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatt 69  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  28032061 tatgaacatgggagcacataccaattagggttgtgattctgacggtggaaatttagatt 28032003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 41394238 - 41394296
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttc 71  Q
    |||||||||||||||||||||||||||||||||||||| |||  | ||||||||||||||    
T  41394238 atgaacaggggagcacataccagttagggttgcgattccgacaat-gaaattcagatttc 41394296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 6387452 - 6387395
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||  ||||||||    
T  6387452 tttgtattttgatgctaagttgagcataacgtttcattatagaagtttcatataattt 6387395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 7760953 - 7760998
Alignment:
Q  148 ttttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||    
T  7760953 tttttaagatagttttattaacaactctaggaacttgtgaaacttg 7760998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 27876630 - 27876585
Alignment:
Q  263 ctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  27876630 ctaagttgagcataacgtattattacggtagtttggtataatttgc 27876585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 28016811 - 28016766
Alignment:
Q  263 ctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  28016811 ctaagttgagcataacgtattattacggtagtttggtataatttgc 28016766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 42423916 - 42423960
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  42423916 ggtaaactcgtacgagttctcgagtcgagtttacctaagcaaaac 42423960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 41394575 - 41394618
Alignment:
Q  387 gtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  41394575 gtaaactcgtacgagttctcgagtcgagtttacctaagcaaaac 41394618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 24067259 - 24067306
Alignment:
Q  144 tttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  24067259 tttatttttta--tagttttattaacaactttaggaacttgagaaacttg 24067306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 35879824 - 35879870
Alignment:
Q  147 attttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||    
T  35879824 attttttatatagttttattaacaacgttaggaacgtgtgaaacttg 35879870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 37131245 - 37131199
Alignment:
Q  147 attttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||  |||||||||||||||| |||||||||||||||||||||    
T  37131245 attttttttatagttttattaacaattttaggaacttgtgaaacttg 37131199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 8029244 - 8029211
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  8029244 ggtaaactcgtacgagttctcgagtcgagtttac 8029211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 26620017 - 26619984
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  26620017 ggtaaactcgtacgagttctcgagtcgagtttac 26619984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 4870836 - 4870784
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttag-atagttttattaacaacttta 176  Q
    |||||||| |||||||| ||||||||||| | |||||||||||||||||||||    
T  4870836 ttttgaagtaattaactagtttatttttttggatagttttattaacaacttta 4870784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 6387559 - 6387499
Alignment:
Q  157 tagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg 217  Q
    ||||||||||||||||||||  |||||||||||||||       |||||||||||||||||    
T  6387559 tagttttattaacaactttataaacttgtgaaacttgcttttttggatggttttatggatg 6387499  T

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Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 17234872 - 17234917
Alignment:
Q  148 ttttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||| |||||||| ||||||||||||  ||||||||||||||||    
T  17234872 tttttttgatagtttgattaacaactttgtgaacttgtgaaacttg 17234917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 19484588 - 19484661
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||  ||||||||||||||    
T  19484588 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 19484661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 24082898 - 24082931
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttac 419  Q
    ||||||||||||||||||||| ||||||||||||    
T  24082898 ggtaaactcgtacgagttctctagtcgagtttac 24082931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 430
Target Start/End: Complemental strand, 12737469 - 12737429
Alignment:
Q  390 aactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    ||||||||||| |||||||||||||||||| ||| ||||||    
T  12737469 aactcgtacgacttctcgagtcgagtttacctaagcaaaac 12737429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 18985041 - 18985085
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttacttaaacaaaac 430  Q
    ||||||||||| |||||||||||||| ||||||| || |||||||    
T  18985041 ggtaaactcgtgcgagttctcgagtcaagtttacctagacaaaac 18985085  T

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Target: scaffold0013 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 89581 - 89892
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||||| || |||| ||| |||||||||||||||||| ||||||||||||||| |||||  ||| || |||| |||||||  |||| ||||| ||| ||    
T  89581 atgaacatggaagcatataacagttagggttgcgattccgacggtggaaattcatatttcgccgtaggcgattacgacgccggttagggttgcagtgatg 89680  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatag-ttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggtttt 210  Q
     | ||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||||||||    
T  89681 gtctttgttgaccttttgaagaaattaaatagtttattttttagatagtttttattaacaactttaggaacttgtgaaactttcttttttggatggtttt 89780  T
Q  211 atggatgg----------aagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatggtagtt 295  Q
    ||||||||           ||||||||||||| || |||||||||    ||| |||||||||||||||||||||| ||||||  ||||||||||||||||    
T  89781 atggatggcttaaatttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctaagttgcgcataatattttattatggtagtt 89880  T
Q  296 tggtataatttg 307  Q
    | ||||||||||    
T  89881 tcgtataatttg 89892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 33 - 308
Target Start/End: Complemental strand, 29716683 - 29716395
Alignment:
Q  33 agttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtgatgtttgttgactttttgaag 132  Q
    ||||||||||||||||  |||||||||||||||| |||| ||  || ||||| ||||| |  |||| ||| |||||||| || |||||||| ||||||||    
T  29716683 agttagggttgcgatttcgacggtggaaattcagttttcgacaccgatgattacgacgtcggttagggttacggtggtggtgcttgttgaccttttgaag 29716584  T
Q  133 aaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggttttatggatg----------gaaga 222  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||       | |||||||| ||||||            |||    
T  29716583 aaattaactagtttattttttagatagttttattaaaaactttaggaacttgtgtaacttgcttttttgaatggttttgtggatgacttaaacttagaga 29716484  T
Q  223 cttatgaaac-tacgattttgtg--aatatttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttgc 308  Q
    |||||||||| || |||||||||  ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29716483 cttatgaaacttatgattttgtgttaatttttatattttgatgctaagttgagcataacattttattatggtagtttggtataatttgc 29716395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 34218729 - 34218901
Alignment:
Q  12 atgaacaggggagcacataccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggtggtg 111  Q
    ||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |||| || |||| ||||||||||||    
T  34218729 atgaataggggagcacatatcagttagggttgcaattccgacggtggaaattcagatttcgacgccggtgattgtgacgtcagttagggttgcggtggtg 34218828  T
Q  112 atgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgt 185  Q
     |||||||||| | ||||||||||||||||  |||||||| ||||||||||||| |||||||| | ||||||||    
T  34218829 gtgtttgttga-tctttgaagaaattaactaatttattttctagatagttttatcaacaacttcaagaacttgt 34218901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 15286184 - 15286126
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaactt 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15286184 ttttgaagaaattaacttgtttattttttggatagttttattaacaactttagaaactt 15286126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 15286072 - 15286016
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataattt 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  15286072 tttgtattttgatgctaagttgagcataacg-tttattatggtagcttggtataattt 15286016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 36196068 - 36196017
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaacttta 176  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  36196068 ttttgaagaaattaactagtttattttttggatagttttattaacaacttta 36196017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 31913805 - 31913866
Alignment:
Q  132 gaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||||||    
T  31913805 gaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaacttg 31913866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 3032652 - 3032710
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||| |||||| ||||    
T  3032652 tttgtattttgattctaagttgagcataacactttattatggtagttgggtatattttg 3032710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 5650499 - 5650425
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    ||||| |||||||||||||| ||  ||| |||||| ||||||||||||  ||| ||||| |||||||||||||||    
T  5650499 ttgaccttttgaagaaattacctaatttgtttttttgatagttttattctcaagtttagaaacttgtgaaacttg 5650425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 21490043 - 21490092
Alignment:
Q  143 gtttattttttagatagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  21490043 gtttttttttta-atagttttattaacaactttaagaacttgtgaaacttg 21490092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 36180046 - 36180085
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattat 288  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  36180046 tttgtatcttgatgctaagttgagcataacgctttattat 36180085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 16497571 - 16497534
Alignment:
Q  156 atagttttattaacaactttaggaacttgtgaaacttg 193  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  16497571 ataggtttattaacaactttagcaacttgtgaaacttg 16497534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 28622894 - 28622821
Alignment:
Q  119 ttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaactt 192  Q
    ||||| ||| |||||||||| || |||| |||||| ||||||||||||  ||| ||||| ||||||| ||||||    
T  28622894 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtaaaactt 28622821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 29759325 - 29759366
Alignment:
Q  388 taaactcgtacgagttctcgagtcgagtttacttaaacaaaa 429  Q
    ||||||||||||| |||||||||||||||||| ||| |||||    
T  29759325 taaactcgtacgatttctcgagtcgagtttacctaagcaaaa 29759366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 16497483 - 16497443
Alignment:
Q  249 tttgtattttgatgctaagttgagcataacgttttattatg 289  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  16497483 tttgtattttgatgctaagttgaacataactctttattatg 16497443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 9156 - 9444
Alignment:
Q  12 atgaacaggggagcacata----ccagttagggttgcgattctgacggtggaaattcagatttcaacgtcggtgattgcgacgccaattagagttgcggt 107  Q
    |||||||||||||||||||    ||||||||||||| ||||  ||||||||||||||| ||||||||| || | |||||||| ||  |||| ||||  ||    
T  9156 atgaacaggggagcacatatataccagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttattgcgacaccggttagggttgttgt 9255  T
Q  108 ggtgatgtttgttgactttttgaagaaattaacttgtttattttttagatagttttattaacaactttaggaacttgtgaaacttgnnnnnnnggatggt 207  Q
    |||  ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  9256 ggtagtgtttgttgtccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggt 9355  T
Q  208 tttatggatg--gaagacttatgaaac-tacgattttgtg----aatatttgtattttgatgctaagttgagcataacgttttattatgg 290  Q
    |||||| |||    | ||||| || || || |||||||||    ||| |||||||||||||||||||||||||||||  |||||||||||    
T  9356 tttatgaatgacttaaactta-gagacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatattttattatgg 9444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 38243 - 38295
Alignment:
Q  125 ttttgaagaaattaacttgtttattttttagatagttttattaacaactttag 177  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||| |||||    
T  38243 ttttgaagaaattaactagtttattttttgaatagttttattaacaattttag 38295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 4979 - 4943
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagtttactta 422  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4979 ggtaaactcgtacgagttctcgagtcgaatttactta 4943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 136086 - 136130
Alignment:
Q  263 ctaagttgagcataacgttttattatggtagtttggtataatttg 307  Q
    |||||||||||||||||||||||||   |||||||||||| ||||    
T  136086 ctaagttgagcataacgttttattactatagtttggtatagtttg 136130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 136233 - 136265
Alignment:
Q  386 ggtaaactcgtacgagttctcgagtcgagttta 418  Q
    ||||||||||| |||||||||||||||||||||    
T  136233 ggtaaactcgtgcgagttctcgagtcgagttta 136265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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