View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17917_high_12 (Length: 310)

Name: NF17917_high_12
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17917_high_12
NF17917_high_12
[»] chr5 (3 HSPs)
chr5 (83-217)||(290951-291085)
chr5 (1-90)||(291246-291335)
chr5 (231-302)||(294991-295062)
[»] chr7 (5 HSPs)
chr7 (152-290)||(40261425-40261563)
chr7 (150-297)||(47904235-47904383)
chr7 (222-286)||(38094696-38094760)
chr7 (204-258)||(26789034-26789088)
chr7 (1-50)||(40261241-40261290)
[»] chr3 (5 HSPs)
chr3 (159-269)||(35898860-35898970)
chr3 (152-268)||(35899590-35899707)
chr3 (222-303)||(47955220-47955301)
chr3 (159-259)||(18753730-18753831)
chr3 (222-303)||(47956101-47956182)
[»] chr8 (2 HSPs)
chr8 (215-302)||(37767499-37767586)
chr8 (219-270)||(32018221-32018272)
[»] chr2 (4 HSPs)
chr2 (222-292)||(26179625-26179695)
chr2 (204-297)||(2757739-2757832)
chr2 (222-297)||(2758464-2758539)
chr2 (222-303)||(16427597-16427677)
[»] chr1 (2 HSPs)
chr1 (209-297)||(38002940-38003028)
chr1 (221-297)||(38003589-38003665)
[»] chr6 (1 HSPs)
chr6 (222-288)||(9747427-9747493)
[»] chr4 (1 HSPs)
chr4 (215-288)||(11960095-11960168)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 291085 - 290951
Alignment:
Q  83 tataaaagatgcataattaaaataaattttcatgagtacattagcaacagtggaagaagagatgggcaagagttatttaacagagactaacggtgtgaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  291085 tataaaagatgcataattaaaataaattttcatgagtacattagcaacagtggaagaagagatgggcaagagttatttaacagagactaacggtgtgaaa 290986  T
Q  183 tacaaagggaggtctttatctatttaaataataaa 217  Q
    |||||||||||||||||||||||||||||||||||    
T  290985 tacaaagggaggtctttatctatttaaataataaa 290951  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 291335 - 291246
Alignment:
Q  1 tcttcatattctacagaaaactttgataaggtgtaaaccaaataaaggacaataattatcagccaacaaattaaataccaactataaaag 90  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  291335 tcttcgtattctacagaaaactttgataaggtgtaaaccaaataaaggacaataattatcagccaacaaattaaatacaaattataaaag 291246  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 294991 - 295062
Alignment:
Q  231 tgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataatctacc 302  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| ||||    
T  294991 tgtttaattaaaaactagagggggtgttagtgtcatttaagaatacctgaagggaggtgagtgtaatttacc 295062  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 40261425 - 40261563
Alignment:
Q  152 gagttatttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactagagg 251  Q
    |||||||||||| ||||||||| | || | ||||| ||||||||  || || ||||| | || |||||| |||||||| |||||| ||||||||||||||    
T  40261425 gagttatttaacggagactaacagcgttagatacagagggaggtgcttgtccatttagacaacaaataagggaggttaatgtttaattaaaaactagagg 40261524  T
Q  252 gggtgttagtgtcatttaaaaatacttcaagggaggtga 290  Q
    || |||||||||||| ||| ||||| | |||||||||||    
T  40261525 ggatgttagtgtcatataagaataccttaagggaggtga 40261563  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 297
Target Start/End: Complemental strand, 47904383 - 47904235
Alignment:
Q  150 aagagttatttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactaga 249  Q
    |||||||| |||||||||| |||||  || || |  ||||||||||  || ||||||| |||||||||||| |||  ||| |||| | ||||||||||||    
T  47904383 aagagttaattaacagagagtaacgacgttaagtgaaaagggaggtggttgtctatttgaataataaataagggatattagtgttaacttaaaaactaga 47904284  T
Q  250 gggggtgttagtgtcattt-aaaaatacttcaagggaggtgagtataat 297  Q
    |||||||| ||||| |||| ||||| |||| ||||||||||||| ||||    
T  47904283 gggggtgtcagtgttatttaaaaaaaactttaagggaggtgagtgtaat 47904235  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 38094760 - 38094696
Alignment:
Q  222 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggag 286  Q
    |||||||| ||||| ||| ||||||||||||||||||||||  |||||| || || |||||||||    
T  38094760 ggaggttaatgttttgttcaaaactagagggggtgttagtgctatttaagaagacctcaagggag 38094696  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 26789034 - 26789088
Alignment:
Q  204 atttaaataataaataaaggaggttattgtttagttaaaaactagagggggtgtt 258  Q
    |||| ||||| || ||| |||||||  ||||||||||||||||||||||||||||    
T  26789034 atttgaataaaaattaagggaggtttgtgtttagttaaaaactagagggggtgtt 26789088  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40261241 - 40261290
Alignment:
Q  1 tcttcatattctacagaaaactttgataaggtgtaaaccaaataaaggac 50  Q
    |||||| ||||||||||| ||||| || ||||||||| ||||||||||||    
T  40261241 tcttcacattctacagaatactttcatcaggtgtaaatcaaataaaggac 40261290  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 35898970 - 35898860
Alignment:
Q  159 ttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactagagggggtgtt 258  Q
    |||||||||||||||||||  || |  ||||||||||  || ||||||| ||||| |||||| |||||||| |||| ||||||||| |||||||||||||    
T  35898970 ttaacagagactaacggtgctaagtgaaaagggaggtggttgtctatttgaataaaaaataagggaggttagtgttgagttaaaaaatagagggggtgtt 35898871  T
Q  259 agtgtcattta 269  Q
    ||||| |||||    
T  35898870 agtgttattta 35898860  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 35899590 - 35899707
Alignment:
Q  152 gagttatttaacagagactaacggtgtgaaa-tacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactagag 250  Q
    |||||| |||| |||||||||||||||  || || |||||||||| |||  ||||||  |||| || ||| |||||||| |||| |||||||||||||||    
T  35899590 gagttaattaatagagactaacggtgtttaagtataaagggaggtgtttgcctatttgtataacaattaagggaggttagtgttgagttaaaaactagag 35899689  T
Q  251 ggggtgttagtgtcattt 268  Q
    ||||||||||||| ||||    
T  35899690 ggggtgttagtgtaattt 35899707  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 47955301 - 47955220
Alignment:
Q  222 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataatctaccc 303  Q
    |||||||| |||||| || ||||||||||||||||||||||  |||||| || |||||||||||||||||| |||| |||||    
T  47955301 ggaggttaatgtttatttcaaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagtgtaatttaccc 47955220  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 18753730 - 18753831
Alignment:
Q  159 ttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaa-taaaggaggttattgtttagttaaaaactagagggggtgt 257  Q
    |||||||||||||||||||| || |  ||||||||||  || ||||||| ||||| ||| ||| |||||||| |||| ||||||||| ||||||||||||    
T  18753730 ttaacagagactaacggtgttaagtgaaaagggaggtggttgtctatttgaataaaaaaataagggaggttagtgttgagttaaaaaatagagggggtgt 18753829  T
Q  258 ta 259  Q
    ||    
T  18753830 ta 18753831  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 47956101 - 47956182
Alignment:
Q  222 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataatctaccc 303  Q
    |||| ||| |||||||||  |||||||||||||||||||||  |||||| || || ||||| ||||||||| |||| |||||    
T  47956101 ggagattagtgtttagttttaaactagagggggtgttagtgctatttaagaagacctcaagagaggtgagtgtaatttaccc 47956182  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 37767499 - 37767586
Alignment:
Q  215 aaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataatctacc 302  Q
    |||||| |||||||  ||||||||||||||||||||||| |||| |||| |||||| ||||| ||| ||||||| ||| |||| ||||    
T  37767499 aaataagggaggtttatgtttagttaaaaactagaggggatgtttgtgttatttaacaatacctcaggggaggttagtgtaatttacc 37767586  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 32018272 - 32018221
Alignment:
Q  219 aaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaa 270  Q
    ||||||||||| |||||||||||||| |||||||  ||||||||| ||||||    
T  32018272 aaaggaggttagtgtttagttaaaaattagagggaatgttagtgttatttaa 32018221  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 26179625 - 26179695
Alignment:
Q  222 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 292  Q
    |||||||  ||||||||| |||||||||||||||||| |||| |||||| || || |||||||||||||||    
T  26179625 ggaggtttgtgtttagtttaaaactagagggggtgtttgtgttatttaagaaaacctcaagggaggtgagt 26179695  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 2757832 - 2757739
Alignment:
Q  204 atttaaataataaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataat 297  Q
    |||||||||| || ||| ||| || | |||||| ||||||| |||||||| ||||||||| |||||| || || ||||||||||||||| ||||    
T  2757832 atttaaataaaaattaatggatgtaagtgtttaattaaaaattagaggggatgttagtgttatttaagaagacctcaagggaggtgagtgtaat 2757739  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 2758464 - 2758539
Alignment:
Q  222 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataat 297  Q
    |||||||| ||||||||| |||| |||||||| ||||||||| |||||| || || | ||||||||||||| ||||    
T  2758464 ggaggttagtgtttagtttaaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaat 2758539  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 16427597 - 16427677
Alignment:
Q  222 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataatctaccc 303  Q
    |||||||| |||||| || ||||||||||||| ||||||||| |||||| || | || || |||||||||| |||| |||||    
T  16427597 ggaggttaatgtttatttcaaaactagagggg-tgttagtgttatttaagaaaattttaaaggaggtgagtgtaatttaccc 16427677  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 38003028 - 38002940
Alignment:
Q  209 aataataaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataat 297  Q
    ||||| || ||| |||||| | |||||| |||||||||||||||| ||||||||  |||||| || || | ||||||||||||| ||||    
T  38003028 aataaaaattaagggaggtaagtgtttaattaaaaactagaggggatgttagtgctatttaagaaaacctaaagggaggtgagtgtaat 38002940  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 38003589 - 38003665
Alignment:
Q  221 aggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagtataat 297  Q
    |||| |||| |||||||||||||| |||||||| ||||||||  |||||| || || | ||||||||||||| ||||    
T  38003589 aggaagttagtgtttagttaaaaagtagaggggttgttagtgctatttaagaagaccttaagggaggtgagtgtaat 38003665  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 9747493 - 9747427
Alignment:
Q  222 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggt 288  Q
    |||||| | ||| ||||| ||||||||||||||| | ||||||||||||| | |||| |||||||||    
T  9747493 ggaggtgaatgtctagtttaaaactagagggggtctaagtgtcatttaaagagactttaagggaggt 9747427  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 11960168 - 11960095
Alignment:
Q  215 aaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggt 288  Q
    |||||| |||||||  ||||||||| |||||||||||||||||| |||  ||||||  | || |||||||||||    
T  11960168 aaataagggaggtttgtgtttagtttaaaactagagggggtgtttgtgctatttaactaaacctcaagggaggt 11960095  T

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