View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_high_13 (Length: 266)
Name: NF17917_high_13
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7548571 - 7548824
Alignment:
| Q |
1 |
taatttctggatgcataatcttaaaggaaaccaatcctcatttatagggtttcaacaaaatttctcatttttgtttgcaagctctcataagagttcttgc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7548571 |
taatttctggatgcataatcttaaaggaaacgaatcctcatttatagggtttcaacaaaatttctcatttttgtttgcaagctctcataagaattcttgc |
7548670 |
T |
|
| Q |
101 |
gatcatgggagcacttttcaagtagaaatcacagttgaagaagttcaaaaagctgtcctcaaactaatttcaaatgtatgtccttcttagacataattta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7548671 |
gatcatgggagcacttttcaagtagaaatcacagttgaagaagttcaaaaagctgtcctcaaactaatttcaaatgtatgtccttcttagatataattta |
7548770 |
T |
|
| Q |
201 |
tcattccttattttattttaactcatcactctattctttgttaatcttctccta |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7548771 |
tcattccttattttattttaactcatcactctattctttgttaatcttctccta |
7548824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1129886 - 1130140
Alignment:
| Q |
1 |
taatttctggatgcataatcttaaaggaaaccaatcctcatttatagggtttcaacaaaatttctcatttttgtttgcaagctctcataagagttcttgc |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||| |||||||||| |
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| T |
1129886 |
taatttctggatacataatcttaaaggaaaccaatcctcattaatagggtttcagcagaatttctcttttttgtttgcaagctctcataggagttcttgc |
1129985 |
T |
|
| Q |
101 |
gatcatgggagcacttttcaagtagaaatcacagttgaagaagttcaaaaagctgtcctcaaactaatttcaaatgta-tgtccttcttagacataattt |
199 |
Q |
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|||||||| ||| | ||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
1129986 |
gatcatggtagctcgtttcaagtagaaatctcagttgacgaagttcaaaaagctgcactcaaactgatttcaaatgtacagtccttcttagacatgattt |
1130085 |
T |
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| Q |
200 |
atcattccttattttattttaactcatcactctattctttgttaatcttctccta |
254 |
Q |
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|| | | | ||||||||| |||||||||||||||| | |||||||||||||||| |
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|
| T |
1130086 |
atggtacttcattttatttgaactcatcactctattttctgttaatcttctccta |
1130140 |
T |
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