View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_high_14 (Length: 260)
Name: NF17917_high_14
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 37361841 - 37362085
Alignment:
| Q |
1 |
cacgaagaatgaaacgcgtaatcaagtgaaagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361841 |
cacgaagaatgaaacgcgtaatcaagtgaaagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttggg |
37361940 |
T |
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| Q |
101 |
ttatgtgatctttcttccttgtgttttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgatgggaag |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37361941 |
ttatgtgatctttcttccttgtattttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgacgggaag |
37362040 |
T |
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| Q |
201 |
aaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaa |
245 |
Q |
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| T |
37362041 |
aaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaa |
37362085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 37366220 - 37365976
Alignment:
| Q |
1 |
cacgaagaatgaaacgcgtaatcaagtgaaagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37366220 |
cacgaagaatgaaacgcgtaatcaagtgaaagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttggg |
37366121 |
T |
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| Q |
101 |
ttatgtgatctttcttccttgtgttttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgatgggaag |
200 |
Q |
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| T |
37366120 |
ttatgtgatctttcttccttgtattttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgacgggaag |
37366021 |
T |
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| Q |
201 |
aaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaa |
245 |
Q |
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| T |
37366020 |
aaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaa |
37365976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 37408567 - 37408504
Alignment:
| Q |
179 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaaca |
242 |
Q |
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| T |
37408567 |
gctcttggattgcaacgggaagaaaaggagaagtgtatttggctttcttcaatctaaatgaaca |
37408504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 37377773 - 37377836
Alignment:
| Q |
179 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaaca |
242 |
Q |
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| T |
37377773 |
gctcttggattgcaacggggagaaacggagaagtgtatttggctttcttcaatctaaatgaaca |
37377836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 37385187 - 37385248
Alignment:
| Q |
181 |
tcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaaca |
242 |
Q |
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| T |
37385187 |
tcttggattgcaacggggagaaacggagaagtgtatttagctttcttcaatctaaatgaaca |
37385248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 41227672 - 41227609
Alignment:
| Q |
179 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaaca |
242 |
Q |
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| T |
41227672 |
gctcttggattgcaacaggaagaaaaggagaagtatatatggctttcttcaatctaaatgaaca |
41227609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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