View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_high_15 (Length: 260)
Name: NF17917_high_15
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 34186505 - 34186748
Alignment:
| Q |
7 |
cttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcagg |
106 |
Q |
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| T |
34186505 |
cttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcagg |
34186604 |
T |
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| Q |
107 |
ccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgta |
206 |
Q |
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| T |
34186605 |
ccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgta |
34186704 |
T |
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| Q |
207 |
tggtgaacaaatggcggatcttactgttatcgaaaagattcttc |
250 |
Q |
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| T |
34186705 |
tggtgaacaaatggcggatcttactgttatcgaaaagattcttc |
34186748 |
T |
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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 252
Target Start/End: Original strand, 518443 - 518630
Alignment:
| Q |
65 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
164 |
Q |
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| T |
518443 |
aataccaagtcactgctagagggaagcgagcacagcttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattatcgacta |
518542 |
T |
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| Q |
165 |
ctttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattcttctc |
252 |
Q |
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| T |
518543 |
ttttgctcgaactgtcacaattgtaaacaagataagaatgcatggtgaacaaatgtcgaatcttactgttatcgaaaagattcttctc |
518630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 367218 - 367032
Alignment:
| Q |
65 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
164 |
Q |
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||||||||| |||||||||| |||| |||| || ||||||||| | |||| || ||| | ||||| |||||| | ||||||||| |||| ||||| |
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| T |
367218 |
aataccaagtcactgctagagggaagcgagctcaacttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattaatgacta |
367119 |
T |
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| Q |
165 |
ctttgctcgtaccctcacaattgcaaataagatga-gaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattcttc |
250 |
Q |
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| T |
367118 |
ttttgctcgaactctcacaattgtaaacaagattaagaatgtatagtgaccaaatgtcgaatcttaccgttgtcgaaaagattcttc |
367032 |
T |
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