View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17917_high_23 (Length: 213)
Name: NF17917_high_23
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 7093063 - 7092880
Alignment:
| Q |
13 |
gcacagattagaaagttccataaattagaataaataataggaaaagacaaaaattgtttcctaattagtaacaacgagatggaatgttttgggagctgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7093063 |
gcacagattagaaagttccataaattagaataaataataggaaaagacaaaaattgtttcctaattagtaacaacgagatggaatgttttgggagctgat |
7092964 |
T |
|
| Q |
113 |
ataactgaccttcattctttcgcagctacaacaacgaggagtgctgtcgagctcatgtgttgggcagtatttttgtatccagaa |
196 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7092963 |
ataactgacctccattctttcgcagctacaacaacgaggagtgctgtcgagctcatgtgttgggcagtatttttgtatccagaa |
7092880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 7105290 - 7105107
Alignment:
| Q |
13 |
gcacagattagaaagttccataaattagaataaataataggaaaagacaaaaattgtttcctaattagtaacaacgagatggaatgttttgggagctgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7105290 |
gcacagattagaaagttccataaattagaataaataataggaaaagacaaaaattgtttcctaattagtaacaacgagatggaatgttttgggagctgat |
7105191 |
T |
|
| Q |
113 |
ataactgaccttcattctttcgcagctacaacaacgaggagtgctgtcgagctcatgtgttgggcagtatttttgtatccagaa |
196 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7105190 |
ataactgacctccattctttcgcagctacaacaacgaggagtgctgtcgagctcatgtgttgggcagtatttttgtatccagaa |
7105107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 33407361 - 33407448
Alignment:
| Q |
109 |
tgatataactgaccttcattctttcgcagctacaacaacgaggagtgctgtcgagctcatgtgttgggcagtatttttgtatccagaa |
196 |
Q |
| |
|
|||| |||||||||| |||||| | |||||||||||||||||||| | ||| |||| |||| ||| ||||||||||||| |||||| |
|
|
| T |
33407361 |
tgatgtaactgacctccattctctgacagctacaacaacgaggagtaccatcgcgctcgtgtgatggacagtatttttgtagccagaa |
33407448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University