View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17917_high_8 (Length: 335)

Name: NF17917_high_8
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17917_high_8
NF17917_high_8
[»] scaffold0144 (1 HSPs)
scaffold0144 (125-335)||(35447-35657)
[»] chr6 (10 HSPs)
chr6 (171-305)||(16870081-16870215)
chr6 (125-259)||(16785107-16785241)
chr6 (125-286)||(16655897-16656058)
chr6 (173-300)||(16795093-16795220)
chr6 (171-265)||(16779057-16779151)
chr6 (21-79)||(16795006-16795064)
chr6 (26-79)||(16655863-16655916)
chr6 (34-68)||(16785081-16785115)
chr6 (21-66)||(16778972-16779017)
chr6 (133-210)||(17067324-17067401)
[»] chr3 (3 HSPs)
chr3 (125-292)||(38941510-38941677)
chr3 (26-84)||(7055578-7055636)
chr3 (34-79)||(38941658-38941703)
[»] scaffold0133 (2 HSPs)
scaffold0133 (34-79)||(6309-6354)
scaffold0133 (26-79)||(10649-10702)
[»] chr8 (1 HSPs)
chr8 (19-84)||(13375876-13375941)
[»] scaffold0256 (1 HSPs)
scaffold0256 (34-69)||(6968-7003)
[»] chr2 (1 HSPs)
chr2 (138-215)||(20152907-20152984)


Alignment Details
Target: scaffold0144 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 125 - 335
Target Start/End: Original strand, 35447 - 35657
Alignment:
Q  125 tgtctagtagtgaacttaactttggaaacctgtaaatttgtaaattttgaagagaagtcattacacccaaacagtctggaaaggatcttagagaaaggaa 224  Q
    ||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  35447 tgtctggtagtgaacttaactttggaaaactataaatttttaaattttgaagagaagtcatggcacccaaacagtctggaaaggatcttagagaaaggaa 35546  T
Q  225 atgattcagatacaaagattgcagtgaggggatgtcttctaagctttctagtactttttcatcacccccggagacaatcagttcacaaagggaagttaga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  35547 atgattcagatacaaagattgcagtgaggggatgtcttctaagctttctagtattttttcatcaccccttgagacaatcagttcacaaagggaagttaga 35646  T
Q  325 ttggtcatgtt 335  Q
    |||||||||||    
T  35647 ttggtcatgtt 35657  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 16870215 - 16870081
Alignment:
Q  171 ttgaagagaagtcattacacccaaacagtctggaaaggatcttagagaaaggaaatgattcagatacaaagattgcagtgaggggatgtcttctaagctt 270  Q
    |||||||||||||||   ||||||||||||||| |||| | |||||||||||||||  | |||| |||||  ||| |||||||||||| |||||||||||    
T  16870215 ttgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaaaggaaattttgcagagacaaactttgtagtgaggggatgccttctaagctt 16870116  T
Q  271 tctagtactttttcatcacccccggagacaatcag 305  Q
    |||||||||||||||||| ||||||||||||||||    
T  16870115 tctagtactttttcatcaaccccggagacaatcag 16870081  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 16785107 - 16785241
Alignment:
Q  125 tgtctagtagtgaacttaactttggaaacctgtaaatttgtaaattttgaagagaagtcattacacccaaacagtctggaaaggatcttagagaaaggaa 224  Q
    ||||| ||| |||||||||||||| |||||  ||||||||||| | ||| | |||||||||  |||||||||||||||| |||||| |||||||| | ||    
T  16785107 tgtctggtactgaacttaactttgaaaacccataaatttgtaattcttgtacagaagtcatggcacccaaacagtctggcaaggatgttagagaaggaaa 16785206  T
Q  225 atgattcagatacaaagattgcagtgaggggatgt 259  Q
    || | |||||| |||| ||||||||||||||||||    
T  16785207 atcaatcagatgcaaatattgcagtgaggggatgt 16785241  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 286
Target Start/End: Original strand, 16655897 - 16656058
Alignment:
Q  125 tgtctagtagtgaacttaactttggaaacctgtaaatttgtaaattttgaagagaagtcattacacccaaacagtctggaaaggatcttagagaaaggaa 224  Q
    ||||| |||||||||||||||||||||| |  | ||| |||||  | ||||||||||| ||  |||||||||||||||| |||||| |||| ||| | ||    
T  16655897 tgtctggtagtgaacttaactttggaaatccctgaatgtgtaatgtctgaagagaagtgatggcacccaaacagtctggcaaggatgttagtgaaggaaa 16655996  T
Q  225 atgattcagatacaaagattgcagtgaggggatgtcttctaagctttctagtactttttcat 286  Q
    || || |||| |||||  |||||||||||||||| |||||| ||  |||||||  |||||||    
T  16655997 ataatacagagacaaactttgcagtgaggggatgccttctatgccatctagtatgttttcat 16656058  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 300
Target Start/End: Original strand, 16795093 - 16795220
Alignment:
Q  173 gaagagaagtcattacacccaaacagtctggaaaggatcttagagaaaggaaatgattcagatacaaagattgcagtgaggggatgtcttctaagctttc 272  Q
    |||||||||| ||  |||||||||  || || |||||| |||||||| |||||| | ||||| |||||  ||| |||||||||||| ||||||||| |||    
T  16795093 gaagagaagtgatggcacccaaactatccggcaaggatgttagagaagggaaattagtcagagacaaaatttgtagtgaggggatgccttctaagccttc 16795192  T
Q  273 tagtactttttcatcacccccggagaca 300  Q
    || || |||||||||||||||| |||||    
T  16795193 taatattttttcatcacccccgtagaca 16795220  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 16779057 - 16779151
Alignment:
Q  171 ttgaagagaagtcattacacccaaacagtctggaaaggatcttagagaaaggaaatgattcagatacaaagattgcagtgaggggatgtcttcta 265  Q
    |||||||||||||||  |||||||||||||||| || ||| |||| ||| | ||||||| |||| ||||   |||||||||||||||| ||||||    
T  16779057 ttgaagagaagtcatggcacccaaacagtctggcaatgatgttagtgaaggaaaatgatacagagacaatttttgcagtgaggggatgccttcta 16779151  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 16795006 - 16795064
Alignment:
Q  21 caatccttaactcttgcaagttttggagttgctgaaagttttctggtagagaccttaac 79  Q
    |||| |||||||||||||||||| |||||||||||||||| |||||||| || ||||||    
T  16795006 caatacttaactcttgcaagtttcggagttgctgaaagttgtctggtagtgaacttaac 16795064  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 16655863 - 16655916
Alignment:
Q  26 cttaactcttgcaagttttggagttgctgaaagttttctggtagagaccttaac 79  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| || ||||||    
T  16655863 cttaacttttgcaagttttggagttgctgaaagttgtctggtagtgaacttaac 16655916  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 16785081 - 16785115
Alignment:
Q  34 ttgcaagttttggagttgctgaaagttttctggta 68  Q
    ||||||||||||||||||||||||||| |||||||    
T  16785081 ttgcaagttttggagttgctgaaagttgtctggta 16785115  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 16778972 - 16779017
Alignment:
Q  21 caatccttaactcttgcaagttttggagttgctgaaagttttctgg 66  Q
    |||| ||||| | ||||||||||||||||||||||||||| |||||    
T  16778972 caatacttaaatattgcaagttttggagttgctgaaagttgtctgg 16779017  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 17067324 - 17067401
Alignment:
Q  133 agtgaacttaactttggaaacctgtaaatttgtaaattttgaagagaagtcattacacccaaacagtctggaaaggat 210  Q
    ||||||||||||||||||||  |  |||||| |||  | ||||||||||||||  ||||||| |||||||| ||||||    
T  17067324 agtgaacttaactttggaaagttaaaaatttctaatgtctgaagagaagtcatggcacccaaccagtctggcaaggat 17067401  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 292
Target Start/End: Complemental strand, 38941677 - 38941510
Alignment:
Q  125 tgtctagtagtgaacttaactttggaaacctgtaaatttgtaaattttgaagagaagtcattacacccaaacagtctggaaaggatcttagagaaaggaa 224  Q
    ||||| ||||||||||||||||||||||| |    || |||||   |||||||||||||||  ||||||| |||||||| |||||| |||  ||| | ||    
T  38941677 tgtctggtagtgaacttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggcaaggatgttattgaaggaaa 38941578  T
Q  225 atgattcagatacaaagattgcagtgaggggatgtcttctaagctttctagtactttttcatcacccc 292  Q
    ||    |||| |||||  |||||||||||||||| |||||||||| |||||||  ||||||| |||||    
T  38941577 atcgaacagacacaaattttgcagtgaggggatgccttctaagctgtctagtatgttttcattacccc 38941510  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 7055636 - 7055578
Alignment:
Q  26 cttaactcttgcaagttttggagttgctgaaagttttctggtagagaccttaacatcgg 84  Q
    ||||||| ||| ||||||||||||||||||| | | |||||||| ||||||||||||||    
T  7055636 cttaacttttgtaagttttggagttgctgaatgctgtctggtagcgaccttaacatcgg 7055578  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 38941703 - 38941658
Alignment:
Q  34 ttgcaagttttggagttgctgaaagttttctggtagagaccttaac 79  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||    
T  38941703 ttgcaagttttggagttgctgaaagttgtctggtagtgaacttaac 38941658  T

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Target: scaffold0133 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 6309 - 6354
Alignment:
Q  34 ttgcaagttttggagttgctgaaagttttctggtagagaccttaac 79  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||    
T  6309 ttgcaagttttggagttgctgaaagttgtctggtagtgaacttaac 6354  T

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Target: scaffold0133; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 10649 - 10702
Alignment:
Q  26 cttaactcttgcaagttttggagttgctgaaagttttctggtagagaccttaac 79  Q
    ||||||| ||||||||||||||||||||||||||| ||||| || || ||||||    
T  10649 cttaacttttgcaagttttggagttgctgaaagttgtctggcagtgaacttaac 10702  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 13375876 - 13375941
Alignment:
Q  19 aacaatccttaactcttgcaagttttggagttgctgaaagttttctggtagagaccttaacatcgg 84  Q
    |||||| ||||||  |||||||||| |||||||||||||| | |||||||| ||||||||| ||||    
T  13375876 aacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcgg 13375941  T

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Target: scaffold0256 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 6968 - 7003
Alignment:
Q  34 ttgcaagttttggagttgctgaaagttttctggtag 69  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6968 ttgcaagttttggagttgctgaaagttgtctggtag 7003  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 20152907 - 20152984
Alignment:
Q  138 acttaactttggaaacctgtaaatttgtaaattttgaagagaagtcattacacccaaacagtctggaaaggatcttag 215  Q
    |||||||||||||||| ||   |||| ||| |||||||||||||||||  |||||||| ||| ||| |||||| ||||    
T  20152907 acttaactttggaaacttgatgatttctaatttttgaagagaagtcatggcacccaaatagtttggcaaggatgttag 20152984  T

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