View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_low_11 (Length: 330)
Name: NF17917_low_11
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 3045284 - 3045125
Alignment:
| Q |
7 |
aagaaaataattagtgctccaacaacctcaaattagtatatgttgaattaaaggtaacataatctcaaaataatatatgtttctccaacatataaaacaa |
106 |
Q |
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| T |
3045284 |
aagaaaataattagtgctccaacaacttcaaattagtatatgttgaattaaaggtaacataatctcaaaataatatatgtttctccaacatataaaacaa |
3045185 |
T |
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| Q |
107 |
tttcactagcaaaataaactaaaagataacaaagaaagatttatttcaatataacaaaga |
166 |
Q |
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| T |
3045184 |
tttcactagcaaaataaactaaaagataacaaagaaagatttatttcaatataacaaaga |
3045125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 3042599 - 3042514
Alignment:
| Q |
230 |
atggtgccctatatacttagtggcggatataatggtcacgcatgaagcggtagttcagattttataactttggaactttgataagt |
315 |
Q |
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| T |
3042599 |
atggtgccctatatacttagtggcggatataatggtcacgcatgaagcggtagttcagattttataactttggaactttgataagt |
3042514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 3043088 - 3043055
Alignment:
| Q |
182 |
tatgtttttggtagaacgagattatcctatatac |
215 |
Q |
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| T |
3043088 |
tatgtttttggtagaacgagattatcctatatac |
3043055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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