View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17917_low_19 (Length: 250)
Name: NF17917_low_19
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_low_19 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35658 - 35899
Alignment:
| Q |
1 |
atgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacag |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35658 |
atgtggaaaaacaaactgtggacagcctccaatatttagtgtcttaagagaactcaaaccttgcaacaactgctctgataatgactcgatttcattacac |
35757 |
T |
|
| Q |
101 |
ctgtcaattgtaagagattctaaagcactaagagtgccaagttcaaacgtaccaggtaattccacgagtctagaaaatttgcgtatggaaagtgacttaa |
200 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35758 |
cggtcaattgtaagagattctaagccactaagagtgccgagttcaaacgtaccaggtaattccatgagtctagaaaatttgcgtatggaaagtgacttaa |
35857 |
T |
|
| Q |
201 |
gattactgttgttaacaatggacttcaataactcttcatttc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35858 |
gattactgttgttaacaatggacttcaataactcttaatttc |
35899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 16656225 - 16656421
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacagctgtcaattgtaagagattctaaagcactaagagtgccaagttca |
145 |
Q |
| |
|
|||||| ||||||| |||||| || ||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| | |||| |
|
|
| T |
16656225 |
aagagacctcaaaccttgcaataagtgctctgataatgactcgatttcattacagcagtgaattgtaagagattctaatgcactaagagtgccgaattca |
16656324 |
T |
|
| Q |
146 |
aacgtaccaggtaattccacgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttcatttc |
242 |
Q |
| |
|
||||||||||||||||| | |||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16656325 |
aacgtaccaggtaattcaatgagtttggaaaattcagatatggaaagtgacttaagattactgttgttaacaatagacttcaataactcttcatttc |
16656421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 16795376 - 16795572
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacagctgtcaattgtaagagattctaaagcactaagagtgccaagttca |
145 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||| | |||| |||| ||||||| |||||||||||||| |||||| |
|
|
| T |
16795376 |
aagagaactcaaaccttgcaacaactgctctgttaatgactccatttcatcacagccttgaattccaagaaattctaaggcactaagagtgccgagttca |
16795475 |
T |
|
| Q |
146 |
aacgtaccaggtaattccacgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttcatttc |
242 |
Q |
| |
|
| |||| |||||||||| |||||| | |||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16795476 |
gatgtactaggtaattccttgagtctggcaaattttaatatgtaaagtgatttaagattactgttgttaacaatagacttcaataactcttcatttc |
16795572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 16869939 - 16869745
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacagctgtcaattgtaagagattctaaagcactaagagtgccaagttca |
145 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||||||||| ||||||| ||| |||||| ||| |||||| ||||||| |||||| |||||| |
|
|
| T |
16869939 |
aagagaactcaaaccttgcaacaatttatctgataatgactccatttcatcacaatattcaattcgaagctcttctaaggcactaaaagtgccgagttca |
16869840 |
T |
|
| Q |
146 |
aacgtaccaggtaattccacgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttcatt |
240 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16869839 |
aacgtaccaggtaattccatgagtctggcaaatttggatatgtgaagtgacttaagattactgttgtcaacaatggacttcaataactcttcatt |
16869745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 16785438 - 16785538
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacagctgtcaattgtaagagattctaaagcactaagagtgccaagttca |
145 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| || || ||||| ||||||| ||| ||||| |||||||||||||||||| |||||| || |||||| |
|
|
| T |
16785438 |
aagagaactcaaaccttgcaacaattgctccgaaaaggactccatttcatgacaagaatcaatgttaagagattctaaagcaccaagagtaccgagttca |
16785537 |
T |
|
| Q |
146 |
a |
146 |
Q |
| |
|
| |
|
|
| T |
16785538 |
a |
16785538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16870059 - 16870011
Alignment:
| Q |
1 |
atgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga |
49 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
16870059 |
atgtggaaaaacaaactgtggacagtcgctgatataaagtgtcttaaga |
16870011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 17067656 - 17067756
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacagctgtcaattgtaagagattctaaagcactaagagtgccaagttca |
145 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| || |||||||| | ||||| | | | ||||| ||||| |||||||||||| |||||| || |||||| |
|
|
| T |
17067656 |
aagagaactcaatccttgcaacaagtgctccgaaaatgactccaattcatcaaatccaacaattctaagaaattctaaagcaccaagagtaccgagttca |
17067755 |
T |
|
| Q |
146 |
a |
146 |
Q |
| |
|
| |
|
|
| T |
17067756 |
a |
17067756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 11023 - 11112
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacagctgtcaattgtaagagattctaaagcactaagagt |
135 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||| | ||||| ||| |||||| ||||| ||||||| ||||||||||| |
|
|
| T |
11023 |
aagagaactcaaaccttgcaacaagtgctctgaaaatgactccaattcatcacataaatcaattctaagaaattctaatgcactaagagt |
11112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 6663 - 6751
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcattacagctgtcaattgtaagagattctaaagcactaagag |
134 |
Q |
| |
|
|||||||||||||| || |||||| ||||| || |||||||| |||||||| || | ||||| | |||||||||||||||| |||||| |
|
|
| T |
6663 |
aagagaactcaaacctttcaacaagtgctccgaaaatgactccatttcattgcaacgttcaatagaaagagattctaaagcagtaagag |
6751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6546 - 6594
Alignment:
| Q |
1 |
atgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga |
49 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||| |||||||| |||| |
|
|
| T |
6546 |
atgtggaaaaactaactgtggacaataatagatatgaagtgtctcaaga |
6594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 7322 - 7371
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcat |
95 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
7322 |
aagagacctcaaaccttgcaacaagtgctctgataatgactccatttcat |
7371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 13376245 - 13376294
Alignment:
| Q |
46 |
aagagaactcaaactttgcaacaactgctctgataatgactcgatttcat |
95 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
13376245 |
aagagaactcaaaccttgcaacaagtgctctgaaaatgactcaatttcat |
13376294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 13376454 - 13376489
Alignment:
| Q |
207 |
tgttgttaacaatggacttcaataactcttcatttc |
242 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13376454 |
tgttgttaaaaatggacttcaataactcttcatttc |
13376489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University