View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_low_23 (Length: 240)
Name: NF17917_low_23
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7548548 - 7548324
Alignment:
| Q |
1 |
catccaatgagttcttgatgaatgcctcgttcacaggtgaaacacaaagagcgtaactgagccttctactttcccacaataaggtcaaccacttctcagt |
100 |
Q |
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| T |
7548548 |
catccaatgagttcttgatgaatgcctcgttcacaggtgaaacacaaagagcgtaactgagccttctactttcccacaataaggtcaaccacttctcagt |
7548449 |
T |
|
| Q |
101 |
tgagacattcttcaatttgaacaatctgataaccaaccggtatgcatcattgaagagctccatgaaaccctaaacagatattgttgaaaccaaaaaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7548448 |
tgagacattcttcaatttgaacaatctgataaccaaccggtatgcatcattgaagagctccatgaaaccctaaacagatattgttgaaaccaaaaaactg |
7548349 |
T |
|
| Q |
201 |
tcaccatatatcttatgcaaatact |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
7548348 |
tcaccatatatcttatgcaaatact |
7548324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1129863 - 1129643
Alignment:
| Q |
1 |
catccaatgagttcttgatgaatgcctcgttcacaggtgaaacacaaagagcgtaactgagccttctactttcccacaataaggtcaaccacttctcagt |
100 |
Q |
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|||||||||| ||| |||||||||||| || ||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
1129863 |
catccaatgaattcaggatgaatgcctcattaacaggcgaaacacagagagcgtgactaagccttctactttcccacaataaggtcaaccacttctccat |
1129764 |
T |
|
| Q |
101 |
tgagacattcttcaatttgaacaatctgataaccaaccggtatgcatcattgaagagctccatgaaaccctaaacagatattgttgaaaccaaaaaactg |
200 |
Q |
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||||||| |||| |||||||||| | |||| |||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||| |
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| T |
1129763 |
tgagacactctttaatttgaacattttgatcaccagccggtatgcatcatttaagagatccatgaaaccctaaagagatattgttgaaaccaaaatactg |
1129664 |
T |
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| Q |
201 |
tcaccatatatcttatgcaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
1129663 |
tcaccatatatcttatgcaaa |
1129643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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