View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17917_low_28 (Length: 204)

Name: NF17917_low_28
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17917_low_28
NF17917_low_28
[»] chr1 (3 HSPs)
chr1 (104-187)||(9768969-9769052)
chr1 (12-85)||(9766359-9766432)
chr1 (104-187)||(9768458-9768541)
[»] chr4 (3 HSPs)
chr4 (12-84)||(36221954-36222026)
chr4 (36-84)||(36206541-36206589)
chr4 (12-84)||(36231862-36231934)
[»] chr6 (1 HSPs)
chr6 (36-84)||(25474460-25474508)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 9768969 - 9769052
Alignment:
Q  104 tctaataattttatccaaaaaacgacagtgaaaatttcgtatcaataacatgacaactcaaaaaagtcttaattgtacgggtat 187  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  9768969 tctaataattttatccaaaaaatgatagtgaaaatttcgtatcaataacaaggcaacccaaaaaagtcttaattgtacgggtat 9769052  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 9766432 - 9766359
Alignment:
Q  12 caaagggaagcatcttcaatgtcagaaatggattttaaaagattgaatgttgtagagaggatttcagtaataaa 85  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  9766432 caaagggaagcatcttcaatgtcagaaatggattctagaagattgaatgttgtagagaggatttcaataataaa 9766359  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 9768458 - 9768541
Alignment:
Q  104 tctaataattttatccaaaaaacgacagtgaaaatttcgtatcaataacatgacaactcaaaaaagtcttaattgtacgggtat 187  Q
    ||||||||||||||  |||||| || |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  9768458 tctaataattttatttaaaaaatgatagtgaaaatttcgtatcaataacaaggcaactcaaaaaagtcttaattgtacgggtat 9768541  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 36222026 - 36221954
Alignment:
Q  12 caaagggaagcatcttcaatgtcagaaatggattttaaaagattgaatgttgtagagaggatttcagtaataa 84  Q
    ||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  36222026 caaagggaagcattttccatgtctgaaatggattctaaaagattgaatgttgtagagaggatttcaataataa 36221954  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 36206589 - 36206541
Alignment:
Q  36 gaaatggattttaaaagattgaatgttgtagagaggatttcagtaataa 84  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  36206589 gaaatggattctaaaagattgaatgttgtagagaggatttcaataataa 36206541  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 36231934 - 36231862
Alignment:
Q  12 caaagggaagcatcttcaatgtcagaaatggattttaaaagattgaatgttgtagagaggatttcagtaataa 84  Q
    ||||||||||||  ||| ||||| |||||| ||||| ||||||| ||||||||| ||||||||||||||||||    
T  36231934 caaagggaagcaatttccatgtcggaaatgaattttgaaagattaaatgttgtaaagaggatttcagtaataa 36231862  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 25474460 - 25474508
Alignment:
Q  36 gaaatggattttaaaagattgaatgttgtagagaggatttcagtaataa 84  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  25474460 gaaatggattctaaaagattgaatgttgtagagaggatttcaataataa 25474508  T

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