View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_low_4 (Length: 429)
Name: NF17917_low_4
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 29088442 - 29088532
Alignment:
| Q |
252 |
gtatgaatttcaattacattaatatgaatcgtgaagttttggtgggatgttagtgttcctccttattagagaagaaatgggtagaatggaa |
342 |
Q |
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| T |
29088442 |
gtatgaatttaaattacattaatctgaatcgtgaacttctggtgggatgatattgttcctgattattagagaaagaatgggtagaatggaa |
29088532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 13305820 - 13305719
Alignment:
| Q |
252 |
gtatgaatttcaattacattaatatgaatcgtgaagttttggtgggatgttagtgttcctccttattagagaagaaatgggtagaatggaagacgaatac |
351 |
Q |
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| T |
13305820 |
gtatgaattttaattacattaatctgaatcctgaagttttagtgggatagtattgttcttggtta---gagaagaaatgggtagaatggaagatgaacac |
13305724 |
T |
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| Q |
352 |
aaaaa |
356 |
Q |
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||||| |
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| T |
13305723 |
aaaaa |
13305719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 29088367 - 29088421
Alignment:
| Q |
11 |
caaaggcaagatgggtcgttttgacctaacttaaagccaaattcctgaacctaat |
65 |
Q |
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| T |
29088367 |
caaaggcaagatggttcattttgacctaatttaaagccaaattcctgaacctaat |
29088421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 4380254 - 4380355
Alignment:
| Q |
11 |
caaaggcaagatgggtcgttttgacctaacttaaagccaaattcctgaacctaattgaatatgccagatattttataatggtcaaacttcttctcaattt |
110 |
Q |
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| T |
4380254 |
caaaggcaagatgggtccttttgacctaatttaaagcctaattccttaacctaatcg-acagccaaaatattttataatggtcaaatctcttctcaattt |
4380352 |
T |
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| Q |
111 |
cgt |
113 |
Q |
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||| |
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| T |
4380353 |
cgt |
4380355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 43146183 - 43146093
Alignment:
| Q |
252 |
gtatgaatttcaattacattaatatgaatcgtgaagttttggtgggatgttagtgttcctccttattagagaagaaatgggtagaatggaa |
342 |
Q |
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| T |
43146183 |
gtatgaatttaaattacattaatttgaatcgtgaacttctgctgggatgatattgttcctgattattagagaaagaatgggtagaatggaa |
43146093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 17447899 - 17447820
Alignment:
| Q |
263 |
aattacattaatatgaatcgtgaagttttggtgggatgttagtgttcctccttattagagaagaaatgggtagaatggaa |
342 |
Q |
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| T |
17447899 |
aattacattaatctgaatcgtgaacttctggtgggatggtattgttcctgattaatagagaaagaatgggtagaatggaa |
17447820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 43146258 - 43146208
Alignment:
| Q |
11 |
caaaggcaagatgggtcgttttgacctaacttaaagccaaattcctgaacc |
61 |
Q |
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| T |
43146258 |
caaaggcaagatggttcattttgacctaatttaaagccaaattcctgaacc |
43146208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 17447814 - 17447778
Alignment:
| Q |
379 |
gaaggataatcctgtgagagtagttcacatggtattt |
415 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
17447814 |
gaaggataatcctgtgagagtagttcacgtggtattt |
17447778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 17447993 - 17447955
Alignment:
| Q |
30 |
tttgacctaacttaaagccaaattcctgaacctaattga |
68 |
Q |
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| T |
17447993 |
tttgacctaatttaaagccaaattcttgaacctaattga |
17447955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 43146087 - 43146051
Alignment:
| Q |
379 |
gaaggataatcctgtgagagtagttcacatggtattt |
415 |
Q |
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|||||||||||||||||||||||||||| | |||||| |
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| T |
43146087 |
gaaggataatcctgtgagagtagttcacgtagtattt |
43146051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 40022448 - 40022546
Alignment:
| Q |
11 |
caaaggcaagatgggtcgttttgacctaacttaaagccaaattcctgaacctaattgaatatgcc-agatattttataatggtcaaacttcttctcaatt |
109 |
Q |
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| T |
40022448 |
caaaggcaagatgagtcattttgacctaatttaaagccaaattccttaacctaatcga--cggccaaaatattttataatggtcaaatctcttctcaatt |
40022545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 344
Target Start/End: Complemental strand, 11202748 - 11202659
Alignment:
| Q |
252 |
gtatgaatttcaattacattaatatgaatcgtgaagttttggtgggatgttagtgttcctccttattagagaagaaatgggtagaatggaaga |
344 |
Q |
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|||||||||| |||||||||||| | |||| ||||||||| |||||| |||| || |||| ||||| |||||||||||||||||||||| |
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| T |
11202748 |
gtatgaattttaattacattaatctaaatcctgaagttttagtggga---tagtattgttcctggttagataagaaatgggtagaatggaaga |
11202659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 10926283 - 10926238
Alignment:
| Q |
369 |
ggaaaagaccgaaggataatcctgtgagagtagttcacatggtatt |
414 |
Q |
| |
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|||| |||| ||||||||||| ||||||||||||||||||| |||| |
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| T |
10926283 |
ggaatagacagaaggataatcgtgtgagagtagttcacatgatatt |
10926238 |
T |
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