View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17917_low_5 (Length: 407)

Name: NF17917_low_5
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17917_low_5
NF17917_low_5
[»] chr7 (32 HSPs)
chr7 (18-407)||(5078559-5078952)
chr7 (272-400)||(38051239-38051367)
chr7 (271-407)||(30756983-30757121)
chr7 (271-407)||(3394262-3394398)
chr7 (271-407)||(13797096-13797233)
chr7 (271-376)||(19404951-19405056)
chr7 (288-407)||(35132757-35132877)
chr7 (273-404)||(37837626-37837758)
chr7 (288-407)||(1749308-1749426)
chr7 (274-364)||(48061214-48061304)
chr7 (275-407)||(1769349-1769482)
chr7 (18-118)||(44057568-44057668)
chr7 (327-403)||(25255083-25255159)
chr7 (274-404)||(12141474-12141607)
chr7 (289-407)||(22742745-22742864)
chr7 (271-382)||(48317003-48317114)
chr7 (331-407)||(9450301-9450379)
chr7 (271-376)||(8013662-8013767)
chr7 (323-376)||(19296719-19296772)
chr7 (271-407)||(24351008-24351145)
chr7 (271-376)||(42978397-42978502)
chr7 (271-404)||(47590103-47590235)
chr7 (271-358)||(4529868-4529955)
chr7 (330-376)||(34899804-34899850)
chr7 (323-376)||(39171789-39171842)
chr7 (331-368)||(45350007-45350044)
chr7 (328-376)||(24770101-24770149)
chr7 (271-407)||(25067875-25068011)
chr7 (331-374)||(38798636-38798679)
chr7 (334-406)||(24069607-24069680)
chr7 (18-87)||(35850423-35850491)
chr7 (329-376)||(39228862-39228910)
[»] chr2 (38 HSPs)
chr2 (273-373)||(24461238-24461338)
chr2 (271-407)||(32448787-32448923)
chr2 (273-407)||(6436407-6436542)
chr2 (271-364)||(12648133-12648226)
chr2 (285-407)||(37994086-37994208)
chr2 (271-376)||(4098900-4099005)
chr2 (271-407)||(28718114-28718248)
chr2 (289-376)||(18107933-18108020)
chr2 (271-404)||(7646269-7646405)
chr2 (323-407)||(3308788-3308873)
chr2 (271-407)||(19597676-19597812)
chr2 (328-404)||(43397288-43397364)
chr2 (43-118)||(44194929-44195004)
chr2 (271-382)||(7448045-7448156)
chr2 (330-403)||(14423149-14423223)
chr2 (323-376)||(4778602-4778655)
chr2 (271-376)||(7678075-7678180)
chr2 (271-407)||(10237378-10237514)
chr2 (271-363)||(20145914-20146006)
chr2 (309-407)||(14955358-14955457)
chr2 (271-407)||(31788253-31788391)
chr2 (271-349)||(6359107-6359185)
chr2 (271-404)||(18763265-18763399)
chr2 (273-382)||(11985421-11985530)
chr2 (271-376)||(12677493-12677598)
chr2 (277-407)||(27097570-27097701)
chr2 (323-376)||(36943321-36943374)
chr2 (328-407)||(19029072-19029151)
chr2 (328-376)||(35220182-35220230)
chr2 (309-364)||(29574842-29574897)
chr2 (273-348)||(37416501-37416576)
chr2 (323-382)||(37876789-37876848)
chr2 (329-368)||(39311054-39311093)
chr2 (327-404)||(19062520-19062598)
chr2 (327-376)||(1415418-1415467)
chr2 (21-105)||(6247807-6247891)
chr2 (328-361)||(11833338-11833371)
chr2 (46-118)||(18248839-18248911)
[»] chr1 (34 HSPs)
chr1 (271-407)||(44543063-44543198)
chr1 (272-407)||(49626701-49626837)
chr1 (271-403)||(18939112-18939244)
chr1 (271-407)||(34528509-34528644)
chr1 (274-376)||(10776657-10776759)
chr1 (271-376)||(34878468-34878573)
chr1 (331-404)||(45789415-45789488)
chr1 (271-371)||(32679301-32679401)
chr1 (323-382)||(32394841-32394900)
chr1 (271-404)||(1742071-1742205)
chr1 (271-407)||(12634957-12635094)
chr1 (46-118)||(27124050-27124122)
chr1 (271-407)||(568948-569085)
chr1 (328-402)||(9341572-9341646)
chr1 (274-376)||(11462645-11462747)
chr1 (279-376)||(3228068-3228165)
chr1 (67-117)||(18428364-18428415)
chr1 (300-407)||(31692629-31692736)
chr1 (271-407)||(34413255-34413393)
chr1 (271-361)||(24012866-24012956)
chr1 (323-364)||(7836975-7837016)
chr1 (274-404)||(29738803-29738935)
chr1 (323-376)||(45415401-45415454)
chr1 (271-348)||(47132705-47132781)
chr1 (296-376)||(19060717-19060797)
chr1 (271-404)||(31983970-31984105)
chr1 (288-407)||(48749997-48750116)
chr1 (330-376)||(14872488-14872534)
chr1 (329-363)||(15836041-15836075)
chr1 (331-404)||(31317601-31317675)
chr1 (330-375)||(940214-940258)
chr1 (42-87)||(6596606-6596650)
chr1 (312-404)||(15435040-15435133)
chr1 (271-364)||(50625277-50625369)
[»] scaffold0009 (1 HSPs)
scaffold0009 (271-407)||(58244-58381)
[»] chr8 (31 HSPs)
chr8 (271-407)||(1239566-1239703)
chr8 (271-407)||(15344095-15344232)
chr8 (271-407)||(15433160-15433297)
chr8 (271-407)||(15524464-15524601)
chr8 (271-376)||(1236888-1236993)
chr8 (271-407)||(8980986-8981124)
chr8 (328-407)||(8443683-8443764)
chr8 (271-404)||(31013736-31013871)
chr8 (271-407)||(24099425-24099560)
chr8 (309-407)||(8826035-8826136)
chr8 (328-407)||(18890868-18890948)
chr8 (273-407)||(37971086-37971219)
chr8 (60-118)||(41178208-41178267)
chr8 (317-374)||(7677477-7677534)
chr8 (323-376)||(14916332-14916384)
chr8 (271-376)||(25191261-25191366)
chr8 (271-376)||(27110659-27110764)
chr8 (271-372)||(29617656-29617757)
chr8 (271-404)||(10377486-10377620)
chr8 (272-407)||(33214794-33214930)
chr8 (18-113)||(37109351-37109446)
chr8 (42-108)||(2355181-2355247)
chr8 (309-407)||(41896341-41896437)
chr8 (60-112)||(2271395-2271448)
chr8 (271-376)||(17693809-17693913)
chr8 (42-118)||(45191983-45192059)
chr8 (328-407)||(20559908-20559987)
chr8 (328-407)||(20571470-20571549)
chr8 (45-111)||(26432235-26432301)
chr8 (271-348)||(39655300-39655377)
chr8 (320-364)||(14545110-14545154)
[»] chr4 (38 HSPs)
chr4 (271-407)||(47320566-47320703)
chr4 (273-407)||(51888381-51888516)
chr4 (271-407)||(9643184-9643325)
chr4 (271-404)||(22063948-22064082)
chr4 (329-407)||(36161579-36161656)
chr4 (271-376)||(2520584-2520689)
chr4 (272-376)||(9178165-9178269)
chr4 (288-407)||(27651772-27651892)
chr4 (60-118)||(1019058-1019117)
chr4 (272-407)||(22038965-22039099)
chr4 (271-372)||(36204582-36204682)
chr4 (275-376)||(43510010-43510111)
chr4 (274-373)||(22300655-22300754)
chr4 (274-376)||(22558662-22558764)
chr4 (271-404)||(26633838-26633972)
chr4 (323-376)||(4142951-4143004)
chr4 (271-376)||(13633921-13634025)
chr4 (328-376)||(32766378-32766426)
chr4 (323-375)||(48257647-48257699)
chr4 (272-377)||(48351376-48351482)
chr4 (323-382)||(53810887-53810946)
chr4 (271-349)||(9713708-9713786)
chr4 (312-382)||(12199882-12199951)
chr4 (271-376)||(18935594-18935698)
chr4 (271-376)||(19853709-19853813)
chr4 (323-376)||(22611043-22611095)
chr4 (60-114)||(39009555-39009610)
chr4 (296-375)||(55227827-55227906)
chr4 (290-376)||(47158054-47158139)
chr4 (271-404)||(5119145-5119281)
chr4 (330-359)||(13863164-13863193)
chr4 (328-404)||(35348170-35348247)
chr4 (271-303)||(21223712-21223744)
chr4 (271-303)||(21248483-21248515)
chr4 (271-303)||(21248638-21248670)
chr4 (273-349)||(22806350-22806425)
chr4 (331-375)||(29121876-29121920)
chr4 (329-376)||(56040842-56040890)
[»] chr3 (38 HSPs)
chr3 (271-407)||(629070-629208)
chr3 (271-407)||(33579655-33579792)
chr3 (271-407)||(21289985-21290121)
chr3 (274-349)||(14859287-14859362)
chr3 (271-407)||(7546397-7546536)
chr3 (309-407)||(16235244-16235342)
chr3 (271-376)||(10232857-10232962)
chr3 (271-407)||(50194448-50194585)
chr3 (60-118)||(54918227-54918286)
chr3 (271-361)||(38545622-38545712)
chr3 (271-404)||(40487112-40487246)
chr3 (274-375)||(12050846-12050947)
chr3 (271-376)||(45568641-45568746)
chr3 (271-376)||(47895938-47896043)
chr3 (288-376)||(8914508-8914596)
chr3 (271-364)||(43016642-43016737)
chr3 (337-376)||(3785706-3785745)
chr3 (277-376)||(6954893-6954992)
chr3 (273-360)||(7449115-7449201)
chr3 (273-360)||(7457257-7457343)
chr3 (329-376)||(9797727-9797774)
chr3 (272-407)||(20465134-20465267)
chr3 (271-376)||(9998253-9998359)
chr3 (328-378)||(32701342-32701392)
chr3 (18-118)||(26187247-26187345)
chr3 (271-376)||(38142358-38142463)
chr3 (323-364)||(40556550-40556591)
chr3 (271-376)||(47042249-47042354)
chr3 (323-376)||(54148827-54148880)
chr3 (271-404)||(21431412-21431546)
chr3 (288-407)||(51303804-51303923)
chr3 (271-339)||(53808096-53808164)
chr3 (309-376)||(53508047-53508113)
chr3 (328-373)||(4821651-4821696)
chr3 (288-407)||(29921856-29921977)
chr3 (288-407)||(29971009-29971130)
chr3 (323-364)||(48650944-48650985)
chr3 (330-407)||(36461595-36461674)
[»] chr6 (21 HSPs)
chr6 (294-407)||(32191896-32192011)
chr6 (271-406)||(27097776-27097912)
chr6 (271-407)||(30493322-30493455)
chr6 (271-407)||(1523196-1523331)
chr6 (271-376)||(12170283-12170388)
chr6 (327-404)||(3913741-3913820)
chr6 (309-404)||(20220735-20220830)
chr6 (309-404)||(22114719-22114814)
chr6 (273-376)||(31852371-31852474)
chr6 (271-385)||(23128406-23128520)
chr6 (271-376)||(33053365-33053470)
chr6 (284-372)||(7976366-7976453)
chr6 (340-404)||(34222653-34222717)
chr6 (271-369)||(4010704-4010802)
chr6 (288-372)||(14801624-14801708)
chr6 (323-374)||(30894476-30894527)
chr6 (329-403)||(32059755-32059829)
chr6 (332-374)||(34018409-34018451)
chr6 (323-376)||(29320059-29320112)
chr6 (308-403)||(14801032-14801128)
chr6 (328-372)||(30776511-30776555)
[»] scaffold0127 (1 HSPs)
scaffold0127 (271-404)||(15279-15413)
[»] chr5 (21 HSPs)
chr5 (271-407)||(14211020-14211154)
chr5 (271-376)||(6012335-6012440)
chr5 (271-407)||(38597584-38597721)
chr5 (271-407)||(39567082-39567219)
chr5 (271-376)||(7036014-7036119)
chr5 (309-407)||(2979477-2979576)
chr5 (271-341)||(8985169-8985239)
chr5 (323-376)||(31391954-31392007)
chr5 (323-404)||(38007196-38007277)
chr5 (271-404)||(13007015-13007150)
chr5 (325-376)||(34945262-34945313)
chr5 (276-385)||(9113913-9114022)
chr5 (327-376)||(10332750-10332799)
chr5 (271-404)||(26878246-26878380)
chr5 (62-108)||(10437382-10437429)
chr5 (309-407)||(8088377-8088475)
chr5 (323-368)||(35850623-35850667)
chr5 (18-118)||(39691123-39691223)
chr5 (317-373)||(7930027-7930083)
chr5 (334-382)||(13421792-13421839)
chr5 (271-299)||(41630297-41630325)
[»] scaffold0603 (1 HSPs)
scaffold0603 (288-404)||(7521-7637)
[»] scaffold0026 (1 HSPs)
scaffold0026 (271-382)||(72055-72166)
[»] scaffold0445 (1 HSPs)
scaffold0445 (271-364)||(1131-1224)
[»] scaffold0123 (1 HSPs)
scaffold0123 (42-118)||(27972-28048)
[»] scaffold0888 (1 HSPs)
scaffold0888 (271-407)||(1839-1976)
[»] scaffold0064 (1 HSPs)
scaffold0064 (271-372)||(19238-19337)
[»] scaffold0017 (1 HSPs)
scaffold0017 (330-376)||(32945-32991)
[»] scaffold0039 (1 HSPs)
scaffold0039 (309-407)||(92925-93024)
[»] scaffold0492 (1 HSPs)
scaffold0492 (329-363)||(12761-12795)
[»] scaffold0154 (1 HSPs)
scaffold0154 (275-368)||(25124-25215)
[»] scaffold0087 (1 HSPs)
scaffold0087 (323-376)||(25526-25579)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 5078952 - 5078559
Alignment:
Q  18 cactactttcaaaacattgcactgatagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccattttacatttcttaatttatgtgtaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5078952 cactactttcaaaacattgcactgatagtaaataaggtttgttttagttaaattgtcatgtcttttgacaccattttacatttcttaatttatgtgtaat 5078853  T
Q  118 annnnnnnncaagcaatgtgtacaaatttaaaaaatactcattttaaaacggatggggtatttcatgtacaatttcataatcacacttgatatatttcaa 217  Q
             ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5078852 tttttttttcaagcaatgtgtacaaatttaaataatactcattttaaaacggatgggatatttcatgtacaatttcataatcacacttgatatatttcaa 5078753  T
Q  218 gaaagacgggtctcaaaatgataggnnnnnnnnn----cagcctgttctannnnnnnagtgagagaaacttcaacttctctctaagttctcattatcttt 313  Q
    |||||||||||||||||||||||||             |||||||||||        |||||||||||||||||||||||||||||||||| ||||||||    
T  5078752 gaaagacgggtctcaaaatgataggaagaaaaaaaaaacagcctgttcttattttttagtgagagaaacttcaacttctctctaagttctctttatcttt 5078653  T
Q  314 cactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtgatt 407  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  5078652 cactcattaaggaagggtgattttaggtcattttttgacctagaatcacccctctgcatctttctctccattatttcgatctaaataagtgatt 5078559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 38051367 - 38051239
Alignment:
Q  272 gtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgca 371  Q
    |||| ||| |||||| ||||||| ||||||||| || |  ||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||| ||    
T  38051367 gtgatagagacttcaccttctctttaagttctctttcttcttcactcattaaggaggggtggttttaggtcatattttaacctagaatcacccatctaca 38051268  T
Q  372 tctttctccccattatttcgatctaaata 400  Q
    || || ||||| || |||  |||||||||    
T  38051267 tcattttcccctttcttttaatctaaata 38051239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 30757121 - 30756983
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| ||||||||||||||||||||||| || || || ||||||  ||||  |||| |||||||||||||| |||||||||| ||||||||||| ||| |    
T  30757121 agtgggagaaacttcaacttctctctaaattttctttctctttcgttcatcgaggaggggtggttttaggtaattttttgacctagaatcacccctctac 30757022  T
Q  371 atctttct--ccccattatttcgatctaaataagtgatt 407  Q
    |||||| |  |||  || |||| ||||||||||||||||    
T  30757021 atcttttttccccttttctttcaatctaaataagtgatt 30756983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 3394262 - 3394398
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||| | ||||||  | |||||||||| || | |||||||| || ||||  |||||||||| ||||||||| ||| || ||||||| || ||     
T  3394262 agtgagagaaattccaactttccactaagttctctttctttttcactctttgaggagtggtggttttacgtcatttttggacatataatcacctatttgt 3394361  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| ||||| || |||||||||||||||||||||    
T  3394362 atctttttcccctttctttcgatctaaataagtgatt 3394398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 13797233 - 13797096
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||||||||||||| ||| || || || || |||  ||||  |||| || ||||||||||||||||||| || ||||||||||| ||| |    
T  13797233 agtgagagaaacttcaacttctctttaaattttctttctcgttcgttcatcgaggatggatggttttaggtcattttttaacctagaatcacccctctac 13797134  T
Q  371 atctttctcccc-attatttcgatctaaataagtgatt 407  Q
    |||||| |||||  || |||| || |||||||||||||    
T  13797133 atctttttccccttttctttcaatttaaataagtgatt 13797096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 19405056 - 19404951
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| |||||||||||||| |  || || || || | ||||| || | ||||||||||||||||||||||||| ||||||||||| ||| |    
T  19405056 agtgagagaaactccaacttctctctaaatcttctttctccttaattcattgagaaggggtggttttaggtcattttttgacctagaatcacccctctac 19404957  T
Q  371 atcttt 376  Q
    ||||||    
T  19404956 atcttt 19404951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 35132757 - 35132877
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccatta 386  Q
    |||||||||||||| || |  ||||||||||||  |||| ||||| |||||||||| |||||||| ||||||||||| ||| |||| ||| ||||| ||     
T  35132757 cttctctctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccctctacatcttttttcccctttc 35132856  T
Q  387 tttcgatctaaataagtgatt 407  Q
    |||  ||||||||||||||||    
T  35132857 ttttaatctaaataagtgatt 35132877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 404
Target Start/End: Complemental strand, 37837758 - 37837626
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    ||||||||||| ||||||||||||||  | |  || || |||  ||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| |||    
T  37837758 tgagagaaactccaacttctctctaaactttatttctccttcgttcattgaggaggggtggttttaggtcattttttgacctagaatcacccctctacat 37837659  T
Q  373 c-tttctccccattatttcgatctaaataagtg 404  Q
    | ||| ||||  || |||| |||||||||||||    
T  37837658 cttttttcccttttctttcaatctaaataagtg 37837626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 407
Target Start/End: Complemental strand, 1749426 - 1749308
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattat 387  Q
    |||||||||||||| || |  ||||||||||||  |||| ||||| |||||||||| |||||||| |||||||||||  || ||||||| | ||| || |    
T  1749426 cttctctctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcaccc-gcttcatcttttttccctttct 1749328  T
Q  388 ttcgatctaaataagtgatt 407  Q
    ||| ||||||||||||||||    
T  1749327 ttcaatctaaataagtgatt 1749308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 48061214 - 48061304
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    |||||||||| ||||||||||||||  | || ||||| |||  ||||  ||||  ||||||||||||||||||||||||||||||||||||    
T  48061214 gagagaaactccaacttctctctaaactttctttatccttcgttcatcgaggagaggtggttttaggtcattttttgacttagaatcaccc 48061304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 407
Target Start/End: Complemental strand, 1769482 - 1769349
Alignment:
Q  275 agagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgca-tc 373  Q
    |||||||||||||||||||| ||| || || |  |||||||| ||| |||||| |||||||||| |||||||||| | | |||||||||| | |||| |     
T  1769482 agagaaacttcaacttctctttaaattgtcttcttctttcacccatcaaggaatggtggttttacgtcattttttaaataagaatcacccttttgcattt 1769383  T
Q  374 tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||||| || ||||| |||||||| ||||||    
T  1769382 tttttcccctttctttcgttctaaatatgtgatt 1769349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 44057668 - 44057568
Alignment:
Q  18 cactactttcaaaacattgcactgatagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaa 116  Q
    |||||||| ||||||||| |||  ||||||||| ||||   ||| ||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||    
T  44057668 cactacttccaaaacattacaccaatagtaaatgaggtacattt-agtaaaattgtcatgtcatttgacatcattattacatttcttaatttgtgtgtaa 44057570  T
Q  117 aa 118  Q
    ||    
T  44057569 aa 44057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 25255083 - 25255159
Alignment:
Q  327 agggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagt 403  Q
    |||||||||||||||||||||||||| || |||||||| | ||||||||| ||||| || |||| || |||||||||    
T  25255083 agggtggttttaggtcattttttgacctataatcacccctttgcatctttttcccctttctttcaatttaaataagt 25255159  T

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Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 12141607 - 12141474
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||||||||| ||||||||||||||  | || || || |||  ||||  | || ||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  12141607 gagagaaactccaacttctctctaaactttctttctccttcgttcatcgaagaggggtggttttaggtcattttttgacatagaatcacccctctacatc 12141508  T
Q  374 tttctcccc---attatttcgatctaaataagtg 404  Q
    ||| | |||    ||||||| |||||||||||||    
T  12141507 ttttttcccttttttatttcaatctaaataagtg 12141474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 407
Target Start/End: Original strand, 22742745 - 22742864
Alignment:
Q  289 ttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattat 387  Q
    ||||||||||||| || |  ||||||| ||||  |||| ||||| |||||||||| ||||| |  ||||||||||| |||||||| ||| ||||| || |    
T  22742745 ttctctctaagttttcttcctctttcattcatcgaggaggggtgattttaggtcaatttttaatctagaatcacccctctgcatcttttttcccctttct 22742844  T
Q  388 ttcgatctaaataagtgatt 407  Q
    ||| ||||||||||||||||    
T  22742845 ttcaatctaaataagtgatt 22742864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 48317114 - 48317003
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||| |||||||  ||||||||||||| ||  | || || |||  |||| ||||| ||||||||||||||||||||| ||| ||||||||||| ||| |    
T  48317114 agtgaaagaaactctaacttctctctaaatttgctttctccttcgttcatcaaggaggggtggttttaggtcatttttggacctagaatcacccctctac 48317015  T
Q  371 atctttctcccc 382  Q
    |||||| |||||    
T  48317014 atctttttcccc 48317003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 9450379 - 9450301
Alignment:
Q  331 tggttttaggtcattttttgacttagaatcacccatctgcatctt-tctcccc-attatttcgatctaaataagtgatt 407  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| | |||||  || |||| ||||||||||||||||    
T  9450379 tggttttaggtcattttttgacctagaatcacccatctacatcttgtttccccttttctttcaatctaaataagtgatt 9450301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 8013767 - 8013662
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||||||||||||||||  | || || |  ||   ||||  |||| |||||||||||| |||||||||||| ||||||||||| ||| |    
T  8013767 agtgagagaaacttcaacttctctctaaactttctttcttctttgttcatcgaggaggggtggttttagatcattttttgacctagaatcacccctctac 8013668  T
Q  371 atcttt 376  Q
    ||||||    
T  8013667 atcttt 8013662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 19296719 - 19296772
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  19296719 aggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttt 19296772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 24351145 - 24351008
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||    ||||||| |||||| || |  ||| ||||||||  |||| ||||| |||||||||| |||||||| ||||||||||| | |||    
T  24351145 agtgagagaaactctgtcttctctttaagttttcttcctctctcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccctgtgc 24351046  T
Q  371 at-ctttctccccattatttcgatctaaataagtgatt 407  Q
    || |||| | ||| || |||| ||||||||||||||||    
T  24351045 atccttttttccctttctttcaatctaaataagtgatt 24351008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 42978397 - 42978502
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||  |||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||| ||||||||||  ||| |    
T  42978397 agtgagagaaactctaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcaccactctac 42978496  T
Q  371 atcttt 376  Q
    ||||||    
T  42978497 atcttt 42978502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 47590103 - 47590235
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||| | |||||||||||||| || || || || |||  ||||  |||| ||||| |||||||||||||||  ||| |||||||||| ||| |    
T  47590103 agtgagagaaattccaacttctctctaaattttctttctcattcgttcatagaggaggggtgattttaggtcatttttgaact-agaatcacccctctac 47590201  T
Q  371 atctttctccccattatttcgatctaaataagtg 404  Q
    || ||| |||| ||| |||| |||||||||||||    
T  47590202 atttttttccctattctttcaatctaaataagtg 47590235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 4529868 - 4529955
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaa 358  Q
    |||||||||||||||| |||||||||||||  || || || |||| |||| || ||  |||| ||||||||||||||||||| |||||    
T  4529868 agtgagagaaacttcaccttctctctaagtcttctttctccttcattcatcaaagagaggtgattttaggtcattttttgacatagaa 4529955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 34899850 - 34899804
Alignment:
Q  330 gtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  34899850 gtggttttaggtcattttttgacctagaatcacccctctacatcttt 34899804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 39171842 - 39171789
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| |||||||| |||||||||||||||| ||||||||||| ||| |||||||    
T  39171842 aggaggggtggttgtaggtcattttttgacctagaatcacccctctacatcttt 39171789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 45350044 - 45350007
Alignment:
Q  331 tggttttaggtcattttttgacttagaatcacccatct 368  Q
    |||||||||||||||||||||| |||||||||||||||    
T  45350044 tggttttaggtcattttttgacctagaatcacccatct 45350007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 24770101 - 24770149
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||| |||||||||||||| ||||||||||||| |||||| |||||||    
T  24770101 gggtgattttaggtcattttatgacttagaatcatccatctacatcttt 24770149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 25067875 - 25068011
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| || |||||| ||||||| || || ||||||| | ||  || | | ||||||||| ||||| ||||||| | ||||||||||| |||    
T  25067875 agtgagagaaactccaccttctcactaagttttctttttctttcatttatcgagaatgagtggttttatgtcatcttttgaccttgaatcacccatttgc 25067974  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    ||| || | |   || |||| ||||||||||||||||    
T  25067975 atcctttttctatttctttcaatctaaataagtgatt 25068011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 38798636 - 38798679
Alignment:
Q  331 tggttttaggtcattttttgacttagaatcacccatctgcatct 374  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||    
T  38798636 tggttttaggtcattctttgacatagaatcacccatctacatct 38798679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 24069680 - 24069607
Alignment:
Q  334 ttttaggtcattttttgacttagaatcacccatctgcatctttct-ccccattatttcgatctaaataagtgat 406  Q
    ||||| ||||||||||||  ||||| ||||| |||| |||||| | |||| ||||||| |||||||||||||||    
T  24069680 ttttatgtcattttttgatctagaaccacccttctgtatctttttccccctttatttcaatctaaataagtgat 24069607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 35850491 - 35850423
Alignment:
Q  18 cactactttcaaaacattgcactgatagtaaataaggtttgttttagtaaaattgtcatgtcttttgaca 87  Q
    |||||||| |||| |||| |||  ||||||||||||| | |||| ||||||||| |||||||||||||||    
T  35850491 cactacttccaaagcattacaccaatagtaaataaggctagttt-agtaaaattctcatgtcttttgaca 35850423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 39228862 - 39228910
Alignment:
Q  329 ggtggttttaggtcattttttgacttagaatcacc-catctgcatcttt 376  Q
    |||| ||||||||||||||||||| |||||||||| | |||||||||||    
T  39228862 ggtgattttaggtcattttttgacctagaatcacctcctctgcatcttt 39228910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 373
Target Start/End: Original strand, 24461238 - 24461338
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    |||| |||||| ||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||    
T  24461238 tgagtgaaactccaacttctctctaagtttttattctctttcactcattaaggaggggtggttttaggtcattttttgacctagaatcactcctctgcat 24461337  T
Q  373 c 373  Q
    |    
T  24461338 c 24461338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 32448923 - 32448787
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||  ||||||||| ||| || |  || ||||||||||||  |||| |||||||||||||||||| |||||| || |||||||| |||||    
T  32448923 agtgagagaaactctaacttctctttaaatttttcttttctttcactcatcgaggaggggtggttttaggtcattatttgacctaaaatcacccctctgc 32448824  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| ||||| || |||||||||||||||||||||    
T  32448823 atctttttcccctttctttcgatctaaataagtgatt 32448787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 407
Target Start/End: Original strand, 6436407 - 6436542
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    |||||||||||| | ||||||||||||||  | || | ||||| ||||||| || ||||| ||||||||||||||||||| ||||||||||| ||||||     
T  6436407 tgagagaaactttagcttctctctaagttgcccttctttttcaatcattaaagaggggtgattttaggtcattttttgacatagaatcacccctctgcac 6436506  T
Q  373 ctttctcccca-ttatttcgatctaaataagtgatt 407  Q
     ||| ||| || || |||||||||||||||||||||    
T  6436507 atttttcctcatttctttcgatctaaataagtgatt 6436542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 12648226 - 12648133
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    ||||||||||||| |||||||||| |||||| || || ||||| |||| || |||| ||||||||||||||||||||||||| |||||||||||    
T  12648226 agtgagagaaactccaacttctctttaagttttctttctcttttactcgttgaggaggggtggttttaggtcattttttgacctagaatcaccc 12648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 407
Target Start/End: Original strand, 37994086 - 37994208
Alignment:
Q  285 caacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctt-tctcccca 383  Q
    ||||||||||||| ||| || || ||||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||| ||||||| || | |||||     
T  37994086 caacttctctctaggttttctttctctttcaatcatcgaggaagggtggttttaggtca-tttttgacctagaatcacccctctgcattttgtttcccct 37994184  T
Q  384 ttatttcgatctaaataagtgatt 407  Q
    || ||||||| |||||||||||||    
T  37994185 ttctttcgatttaaataagtgatt 37994208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 4098900 - 4099005
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || ||||||  ||||  ||||||||||| |||||||||||||||||| ||||||||||||||| |    
T  4098900 agtgggagaaactccaacttctctctaaactttctttctctttccttcatcgaggaagggtggctttaggtcattttttgacctagaatcacccatctac 4098999  T
Q  371 atcttt 376  Q
    ||||||    
T  4099000 atcttt 4099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 28718248 - 28718114
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||| |||| |||||| || |||||||| ||||||| || | ||||||||||||||||| ||||||| ||||||||  |||||||    
T  28718248 agtgagagaaactccaact-ctctttaagttttctttatctttaactcattgagaaggggtggttttaggtcat-ttttgacatagaatcattcatctgc 28718151  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| | ||| || ||||||  ||||||| |||||    
T  28718150 atcttttttccctttctttcgacataaataactgatt 28718114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 18108020 - 18107933
Alignment:
Q  289 ttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||||||||||| || || ||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||  | |||||||||    
T  18108020 ttctctctaagttttctttctctttcattcattgaggaatggtggttttaggtcattttttgacctagaatcacctctttgcatcttt 18107933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 7646269 - 7646405
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  7646269 agtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctctac 7646368  T
Q  371 atctttct---ccccattatttcgatctaaataagtg 404  Q
    |||||| |   |||  || ||||||||||||||||||    
T  7646369 atctttttttccccttttctttcgatctaaataagtg 7646405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 3308788 - 3308873
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattatttcgatctaaataagtgatt 407  Q
    |||| ||||| |||||||||| |||||||| ||||||||||| | |||||| ||| ||||| ||||||| ||||||||||||||||    
T  3308788 aggaggggtgattttaggtcaatttttgacctagaatcacccctttgcatcttttttcccctttatttcaatctaaataagtgatt 3308873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 19597676 - 19597812
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| |||||| |||||||||| || || |||| ||||||| || | ||| || |||||||| || ||||||| |||||||||||  ||||    
T  19597676 agtgagagaaactccaacttatctctaagttatctttctcttccactcatcaaag-aggatgattttaggttatcttttgacctagaatcaccctcctgc 19597774  T
Q  371 atctttctcccca-ttatttcgatctaaataagtgatt 407  Q
    |||||| | | || || |||||||||| ||||||||||    
T  19597775 atcttttttcgcatttctttcgatctacataagtgatt 19597812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 404
Target Start/End: Complemental strand, 43397364 - 43397288
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtg 404  Q
    ||||||||||||||||||||||||| ||||||||||  ||| ||||||| ||||  || |||| |||||||||||||    
T  43397364 gggtggttttaggtcattttttgacctagaatcacctctctacatctttttcccttttctttcaatctaaataagtg 43397288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 44195004 - 44194929
Alignment:
Q  43 tagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaaa 118  Q
    |||||||||||||| |||| |||||||||||||| || ||||||| |||| |||||||||||||||| |||||||||    
T  44195004 tagtaaataaggttagttt-agtaaaattgtcatatcatttgacatcattattacatttcttaatttgtgtgtaaaa 44194929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 7448045 - 7448156
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||| | ||||||||||| ||| |    
T  7448045 agtgggagaaactccaacttctctctaaactttctttttccttcgttcatcgaggaggggtggttttaggtcattttttgtcctagaatcacccctctac 7448144  T
Q  371 atctttctcccc 382  Q
    |||||| |||||    
T  7448145 atctttttcccc 7448156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 14423149 - 14423223
Alignment:
Q  330 gtggttttaggtcattttttgacttagaatcacccatctgcatctttctcccca-ttatttcgatctaaataagt 403  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||||| |||| ||| ||| ||||||||||||    
T  14423149 gtggttttaggtcaatttttgacctagaatcactcgtctgcatctttcttcccatttacttcaatctaaataagt 14423223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 4778602 - 4778655
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  4778602 aggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttt 4778655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 7678180 - 7678075
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  | ||  | || ||||||||||||||||||||||||| ||||||||||| ||| |    
T  7678180 agtgagagaaactccaacttctctctaaactttctttctccttcgttgatcgatgaggggtggttttaggtcattttttgacctagaatcacccctctac 7678081  T
Q  371 atcttt 376  Q
    ||||||    
T  7678080 atcttt 7678075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 10237514 - 10237378
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||   ||||||| |||||| || |  ||||||||||||  || |  |||| |||||||||| |||||||| ||||||||||| ||| |    
T  10237514 agtgagagaaactttg-cttctctttaagttttcttcctctttcactcatcgagtagaggtgattttaggtcaatttttgacctagaatcacccctctac 10237416  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| ||||| || |||| ||||||||||||||||    
T  10237415 atcttttttcccctttctttcaatctaaataagtgatt 10237378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 20146006 - 20145914
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacc 363  Q
    ||||||||||||||||  |||||| |||||| || || |  ||||||||| ||||| |||  |||||||||||||| ||||| ||||||||||    
T  20146006 agtgagagaaacttcacattctctttaagttatctttcttcttcactcatcaaggaggggcagttttaggtcatttattgacatagaatcacc 20145914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 14955358 - 14955457
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||||||||||||  |||| ||||| ||||| |||| |||||||| |||||||| || |||||||| ||| ||| | || |||| ||||||||||||||||    
T  14955358 tctttcactcatcgaggaggggtgattttaagtcaatttttgacctagaatcatccctctgcatcttttttcctctttctttcaatctaaataagtgatt 14955457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 31788253 - 31788391
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || |  |||  ||||  ||||  || |||||||||| |||||||||| ||||||||||| ||| |    
T  31788253 agtgagagaaactccaacttctctctaaactttctttcttcttcgttcatcgaggagaggcggttttaggtaattttttgacctagaatcacccctctac 31788352  T
Q  371 atctttctcccca--ttatttcgatctaaataagtgatt 407  Q
    |||||| | ||||  || |||| ||||||||||||||||    
T  31788353 atcttttttcccattttctttcaatctaaataagtgatt 31788391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 349
Target Start/End: Complemental strand, 6359185 - 6359107
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcatttttt 349  Q
    ||||||||||| |||| ||||| ||||||||| | || ||||||||||||  |||   |||||||||||||||||||||    
T  6359185 agtgagagaaatttcaccttctttctaagttcgctttctctttcactcatcgaggtgaggtggttttaggtcatttttt 6359107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 18763265 - 18763399
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || ||  | ||||  |||  ||||  |||||||||| ||||||||||||| ||||||||||| ||| |    
T  18763265 agtgagagaaactccaacttctctctaaactttctttcaccttcatccatcgaggagaggtggttttatgtcattttttgacctagaatcacccctctac 18763364  T
Q  371 atc-tttctccccattatttcgatctaaataagtg 404  Q
    ||| ||| ||||  || |||| |||||||||||||    
T  18763365 atcttttttcccttttctttcaatctaaataagtg 18763399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 382
Target Start/End: Complemental strand, 11985530 - 11985421
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    ||||||||||| ||||||||||||||  | || || ||||||| || |  ||||  |||||||||| |||||||||| || ||||||||||| ||| ||     
T  11985530 tgagagaaactccaacttctctctaaactttctttctctttcattcttcgaggagtggtggttttaagtcattttttaacctagaatcacccctctacaa 11985431  T
Q  373 ctttctcccc 382  Q
    |||| |||||    
T  11985430 ctttttcccc 11985421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 12677598 - 12677493
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || ||   ||||  |||| |||| |||| ||||||||||||||| ||||||||||| ||| |    
T  12677598 agtgagagaaactccaacttctctctaaactttctttctcctttgttcatcgaggaggggtagtttaaggtcattttttgacctagaatcacccctctac 12677499  T
Q  371 atcttt 376  Q
    ||||||    
T  12677498 atcttt 12677493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 407
Target Start/End: Complemental strand, 27097701 - 27097570
Alignment:
Q  277 agaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||| ||||||||||||||||||| ||||||||||| ||| |||||||    
T  27097701 agaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtgattttaggtcattttttgacctagaatcaccc-tctacatcttt 27097603  T
Q  377 ct--ccccattatttcgatctaaataagtgatt 407  Q
     |  |||  || ||| |||||||||||||||||    
T  27097602 tttccccttttcttttgatctaaataagtgatt 27097570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 36943374 - 36943321
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  36943374 aggaggggtggttttaggtcattttttgacctagaatcaccactctacatcttt 36943321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 19029151 - 19029072
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatctttct-ccccattatttcgatctaaataagtgatt 407  Q
    |||||||||| | |||||||| ||| ||||||||||||||| ||||||| | |||| |  |||||||||||||||||||||    
T  19029151 gggtggttttggatcattttt-gacctagaatcacccatctccatctttttaccccttcttttcgatctaaataagtgatt 19029072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 35220182 - 35220230
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||||||||||| |||||||||| ||||||||||| ||| |||||||    
T  35220182 gggtggttttaggttattttttgacctagaatcacccctctccatcttt 35220230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 29574897 - 29574842
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    |||||||||| |  |||| |||||||||||| |||||||||||| |||||||||||    
T  29574897 tctttcactcgtcgaggaggggtggttttagatcattttttgacctagaatcaccc 29574842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 37416501 - 37416576
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttt 348  Q
    |||||||||||||||||||||||||| || |  |||||||||| || |  | || ||||| |||||||||||||||    
T  37416501 tgagagaaacttcaacttctctctaaattttttttatctttcattcgtcgatgaggggtgattttaggtcattttt 37416576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 37876848 - 37876789
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctcccc 382  Q
    |||| |||||||||||||||| |||||||| ||||||||||| | | ||||||| |||||    
T  37876848 aggaggggtggttttaggtcaatttttgacctagaatcacccttgtacatctttttcccc 37876789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 39311093 - 39311054
Alignment:
Q  329 ggtggttttaggtcattttttgacttagaatcacccatct 368  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  39311093 ggtgattttaggtcattttttgacctagaatcacccatct 39311054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 19062598 - 19062520
Alignment:
Q  327 agggtggttttaggtcattttttgacttagaatcacccatctgcat-ctttctccccattatttcgatctaaataagtg 404  Q
    ||||||||||||||| |||||||||  ||||||||||| ||| ||| |||| ||||  || |||| |||||||||||||    
T  19062598 agggtggttttaggttattttttgaactagaatcacccctctacatcctttttcccttttctttcaatctaaataagtg 19062520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 1415418 - 1415467
Alignment:
Q  327 agggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||||||||||||| |||||||||  ||||||||||| ||| |||||||    
T  1415418 agggtggttttaggttattttttgatctagaatcacccctctacatcttt 1415467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 6247807 - 6247891
Alignment:
Q  21 tactttcaaaacattgcactgatagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaa 105  Q
    ||||| |||| |||| |||  ||||||||||||| | |||| ||||||||||||||| ||||||||| |||| || ||||||||||    
T  6247807 tacttccaaagcattacaccaatagtaaataaggctagttt-agtaaaattgtcatgacttttgacatcattatttcatttcttaa 6247891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 11833338 - 11833371
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatca 361  Q
    |||||||||||||||||||||||||||| |||||    
T  11833338 gggtggttttaggtcattttttgacttaaaatca 11833371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 18248839 - 18248911
Alignment:
Q  46 taaataaggtttgttttagtaaaattgtcatgtcttttgacaccat-tttacatttcttaatttatgtgtaaaa 118  Q
    ||||||||||| |||| ||||||||||||||||||||| ||| |||  | |||||| ||||||| |||||||||    
T  18248839 taaataaggttagttt-agtaaaattgtcatgtcttttaacatcatcatcacattttttaatttgtgtgtaaaa 18248911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 44543063 - 44543198
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||||| || || ||||||||||||  |||||||||| |||||||| ||| |||||| || ||||| || |||||    
T  44543063 agtgagagaaactccaacttctctctaagttttccttctctttcactcatcgaggaagggtgcttttaggttattctttgacctaaaatcagcc-tctgc 44543161  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| | ||| || |||||||||||||||||||||    
T  44543162 atcttttttccctttctttcgatctaaataagtgatt 44543198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 49626701 - 49626837
Alignment:
Q  272 gtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgca 371  Q
    |||||||||||| ||||||||||||||||  || || ||||||||||||  |||| |||||||||||||||||| |||||| || |||||||| ||||||    
T  49626701 gtgagagaaactccaacttctctctaagtgttccttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaatcacccctctgca 49626800  T
Q  372 tc-tttctccccattatttcgatctaaataagtgatt 407  Q
    || ||| ||||| || |||| ||||||||||||||||    
T  49626801 tcttttttcccctttctttctatctaaataagtgatt 49626837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 403
Target Start/End: Original strand, 18939112 - 18939244
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||||| |||||||||||||| || || || |||| | ||  ||||  |||||||||||||||||||||||  ||||||||||  |||||    
T  18939112 agtgagagaaacttcaccttctctctaagttttctttctccttcattaatcgaggagaggtggttttaggtcattttttgatctagaatcacctctctgc 18939211  T
Q  371 atctttctccccattatttcgatctaaataagt 403  Q
    |||||| ||||| || |||| || |||||||||    
T  18939212 atctttttcccctttctttcaatttaaataagt 18939244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 34528509 - 34528644
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||| ||| ||| |||||||| ||| |||| || || ||||||||||||  | || | ||||||||| ||||||||||||| ||||||||||| |||||    
T  34528509 agtgaaagagactccaacttctgtcttagttttctttttctttcactcatcgaagatgagtggttttatgtcattttttgacctagaatcacccctctgc 34528608  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| | ||| || |||||||||||||||||||||    
T  34528609 atcttt-ttccctttctttcgatctaaataagtgatt 34528644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 10776759 - 10776657
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||||||||| ||| ||||||||||  | || || || |||| ||||  ||||||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  10776759 gagagaaactccaatttctctctaaactttctttctccttcattcatcgaggaagggtggttttagatcattttttgacctagaatcacccatctacatc 10776660  T
Q  374 ttt 376  Q
    |||    
T  10776659 ttt 10776657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 34878573 - 34878468
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| |||||||||| |||  | || || ||||||  ||||  |||| ||||||||||||||||||||||||| ||||||||| ||||| |    
T  34878573 agtgagagaaactccaacttctctttaaactttctttctctttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcactcatctac 34878474  T
Q  371 atcttt 376  Q
    ||||||    
T  34878473 atcttt 34878468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 45789415 - 45789488
Alignment:
Q  331 tggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtg 404  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||| || ||||||||||    
T  45789415 tggttttaggtcattttttgacctagaatcacccctctgcatctttttcccctttctttcaatttaaataagtg 45789488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 32679401 - 32679301
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||| | |||||| |||||||||| || || |||||||||| |  |||| ||||||||||| ||||||||||||| |||||||| || |||||    
T  32679401 agtgagagaaattccaacttttctctaagttttctttctctttcactcgtcgaggaggggtggttttatgtcattttttgacatagaatcatccctctgc 32679302  T
Q  371 a 371  Q
    |    
T  32679301 a 32679301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 32394841 - 32394900
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctcccc 382  Q
    |||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  32394841 aggaggggtggttttaggtcattttttgacttagaatcatccctctgcatctttttcccc 32394900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 1742071 - 1742205
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||  ||||||| |||||  |  | || ||||||  |||| |||||| |||||||||||||||||||||||| ||||||||||| ||| |    
T  1742071 agtgagagaaactcaaacttctttctaaacttcctttctctttcgttcatcaaggaatggtggttttaggtcattttttgacctagaatcacccctctcc 1742170  T
Q  371 atc-tttctccccattatttcgatctaaataagtg 404  Q
    ||| |||| |||  || |||| |||||||||||||    
T  1742171 atcttttcccccttttctttcaatctaaataagtg 1742205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 12634957 - 12635094
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||  |||||||||||| ||| |  || |||||||||| |  |||| | |||||||||||||||||| |||| || |||||||| | |||    
T  12634957 agtgagagaaactcaaacttctctctatgttttttttctctttcactcgtcgaggatgtgtggttttaggtcattttctgacctataatcacccctttgc 12635056  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| |||| ||| | || ||||||||||||||||    
T  12635057 atcttttttcccaattttgtcaatctaaataagtgatt 12635094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 27124050 - 27124122
Alignment:
Q  46 taaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaaa 118  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||| | |||||||    
T  27124050 taaataaggttagttt-agtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtatgtaaaa 27124122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 569085 - 568948
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaaggg-tggttttaggtca-ttttttgacttagaatcacccatct 368  Q
    |||||||||||||||||||||||| ||| || || || ||||||||||||  |||| ||| |||||||| ||   |||||| || ||||||| ||| |||    
T  569085 agtgagagaaacttcaacttctctataaatt-tctttctctttcactcatctaggagggggtggttttaagtatgtttttttacctagaatcccccctct 568987  T
Q  369 gcatctttctccccattatttcgatctaaataagtgatt 407  Q
     ||||||| ||||| || |||| ||||||||||||||||    
T  568986 acatctttttcccctttctttcaatctaaataagtgatt 568948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 9341572 - 9341646
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataag 402  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||||| ||| | || |||| || ||||||||    
T  9341572 gggtggttttaggtcattttttgacttagaatcacctgtatgcatctttttcctctttctttcaatataaataag 9341646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 11462747 - 11462645
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||||||||||||| ||||||||||  | || || || |||  ||||| | || ||||| |||||||| |||||||||| ||||||||||| ||||||||    
T  11462747 gagagaaacttcaatttctctctaaactttctttctccttcgttcattgacgaggggtgattttaggttattttttgacctagaatcacccctctgcatc 11462648  T
Q  374 ttt 376  Q
    |||    
T  11462647 ttt 11462645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 376
Target Start/End: Original strand, 3228068 - 3228165
Alignment:
Q  279 aaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||| ||||||||| |||| || |  || || |||| |||| ||||| |||||||||||||||||||||| || || |||||||||||| |||||||    
T  3228068 aaactccaacttctccctaaattttatttctccttcattcatcaaggaggggtggttttaggtcattttttaacctacaatcacccatctacatcttt 3228165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 18428415 - 18428364
Alignment:
Q  67 aaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaa 117  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  18428415 aaattgtcatgtcttttgacatcattattacatttcttaatttgtgtgtaaa 18428364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 31692736 - 31692629
Alignment:
Q  300 ttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaat 399  Q
    ||||| || ||||||||||||  |||| | ||| ||||||||||||||||||| | ||||||||| ||||||| ||| |  || || ||||||||||| |    
T  31692736 ttctctttctctttcactcatcgaggatgtgtgattttaggtcattttttgaccttgaatcacccctctgcatttttttttcctttctttcgatctaagt 31692637  T
Q  400 aagtgatt 407  Q
    || |||||    
T  31692636 aattgatt 31692629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 34413393 - 34413255
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||    |||||||||||||| |  || ||||||||| ||  || | ||||| |||||||||| ||||| |  ||||||||||| |||||    
T  34413393 agtgagagaaactctgccttctctctaagttttttttctctttcacttatcgagtaggggtgattttaggtcaattttttatctagaatcacccctctgc 34413294  T
Q  371 atc--tttctccccattatttcgatctaaataagtgatt 407  Q
    |||  ||| ||||| || |||| ||||||||||||||||    
T  34413293 atctttttttcccctttctttcaatctaaataagtgatt 34413255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 24012956 - 24012866
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatca 361  Q
    ||||||||||||||||| |||| ||||||||||| || ||||||||||||  | ||  | || ||||| |||| |||||||| ||||||||    
T  24012956 agtgagagaaacttcaaattctttctaagttctctttctctttcactcatcgacgatagatgattttatgtcaatttttgacctagaatca 24012866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 7837016 - 7836975
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  7837016 aggaagggtggttttaggtcattttttgatctagaatcaccc 7836975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 29738935 - 29738803
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||||||||| |||| |||||||||  | || || || |||  ||||  |||| |||||||||||||||| ||||| || ||||||||||| ||| ||||    
T  29738935 gagagaaactccaacatctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcaattttttacctagaatcacccctctacatc 29738836  T
Q  374 tttctcccc--attatttcgatctaaataagtg 404  Q
    ||| |||||   || |||| |||||||||||||    
T  29738835 tttttcccctttttctttcaatctaaataagtg 29738803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 45415401 - 45415454
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||||||  ||||||||||| ||| |||||||    
T  45415401 aggaggggtggttttaggtcattttttgatctagaatcacccctctacatcttt 45415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 47132705 - 47132781
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttt 348  Q
    ||||||||||||| |||||||| | |||||| || || |||||||||| || |||| ||||| |||||||||||||||    
T  47132705 agtgagagaaactccaacttcttt-taagttttcgttttctttcactcgttgaggaggggtgattttaggtcattttt 47132781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 19060717 - 19060797
Alignment:
Q  296 taagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||| || || |||||||||||| ||| | |||||||||||||| ||| ||| |  || ||||||||||||||||||||    
T  19060717 taagttttccttctctttcactcatcaagcacgggtggttttaggttattcttttatctaaaatcacccatctgcatcttt 19060797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 31983970 - 31984105
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || |  ||   |||| |||||  |||||||||||||||||||||||| ||||| ||||  ||| |    
T  31983970 agtgagagaaactccaacttctctctaaactttctttcttctttgttcatcaaggagaggtggttttaggtcattttttgacctagaagcacctctctac 31984069  T
Q  371 atc--tttctccccattatttcgatctaaataagtg 404  Q
    |||  ||| ||||  || ||||||||||||||||||    
T  31984070 atctttttttcccttttctttcgatctaaataagtg 31984105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 48749997 - 48750116
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccatta 386  Q
    |||||||||||||| || |  ||||||||||||  |||| ||||| | ||||||||  ||||||| ||||||||| | | |||||| ||| ||||| ||     
T  48749997 cttctctctaagttttcttcctctttcactcatcgaggaggggtgatattaggtcaaattttgacctagaatcactcct-tgcatcttttttcccctttc 48750095  T
Q  387 tttcgatctaaataagtgatt 407  Q
    |||| ||||||||||||||||    
T  48750096 tttcaatctaaataagtgatt 48750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 14872488 - 14872534
Alignment:
Q  330 gtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||||| |||||||||||||||||||||||| | ||| |||||||    
T  14872488 gtggttttcggtcattttttgacttagaatcactcctctacatcttt 14872534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 15836041 - 15836075
Alignment:
Q  329 ggtggttttaggtcattttttgacttagaatcacc 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  15836041 ggtggttttaggtcattttttgacctagaatcacc 15836075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 31317601 - 31317675
Alignment:
Q  331 tggttttaggtcattttttgacttagaatcacc-catctgcatctttctccccattatttcgatctaaataagtg 404  Q
    ||||||||||| |||| ||||| |||||||||| | ||||||||||| ||| |||| |||| || ||||||||||    
T  31317601 tggttttaggtaatttgttgacatagaatcacctcctctgcatctttttcctcattctttcaatttaaataagtg 31317675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 940214 - 940258
Alignment:
Q  330 gtggttttaggtcattttttgacttagaatcacccatctgcatctt 375  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||    
T  940214 gtggttttaagtcatttttt-acctagaatcacccatctgcatctt 940258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 6596606 - 6596650
Alignment:
Q  42 atagtaaataaggtttgttttagtaaaattgtcatgtcttttgaca 87  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  6596606 atagtaaataaggtttg-tttggtaaaattgtcatttcttttgaca 6596650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 404
Target Start/End: Complemental strand, 15435133 - 15435040
Alignment:
Q  312 ttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattatttcgatctaaataagtg 404  Q
    |||| |||| ||||| ||| ||||||||||||||||||||  |||||||| || ||| |||| ||| ||||  || |||| |||||||||||||    
T  15435133 ttcattcatcaaggaggggcggttttaggtcattttttgatctagaatcaaccctctacatcttttttcccttttctttcaatctaaataagtg 15435040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 50625369 - 50625277
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    |||||||||||  |||  |||||||| ||||||| || |||||||||| || || || | |||||||| ||||| |||| ||||||||||||||    
T  50625369 agtgagagaaatctcacattctctctcagttctctttctctttcactcgttgagaaatgatggttttatgtcatctttt-acttagaatcaccc 50625277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 58381 - 58244
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||||| || || |||||||||| |  |||| ||||||||||||||||||||||||| || |||||||| |||||    
T  58381 agtgagagaaactccaacttctctctaagttttcgttttctttcactcgtcgaggaggggtggttttaggtcattttttgacctaaaatcacccctctgc 58282  T
Q  371 at-ctttctccccattatttcgatctaaataagtgatt 407  Q
    || |||| | ||  || |||| ||||||||||||||||    
T  58281 atccttttttccttttctttcaatctaaataagtgatt 58244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 1239703 - 1239566
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||||||||||||||||||| || || |||| | |||||  |||| ||||||||||||||| || |||||| || |||||||| |||||    
T  1239703 agtgagagaaacttcaacttctctctaagttttccttctcttccgctcatcgaggaggggtggttttaggtccttctttgacctaaaatcacccctctgc 1239604  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| ||||| ||  ||||||||||||||||||||    
T  1239603 atcttttttcccctttcgttcgatctaaataagtgatt 1239566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 15344095 - 15344232
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||||| |  || ||||||||||||  |||| |||||||||||||||||| |||||| || ||| |||| |||||    
T  15344095 agtgagagaaactccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccctctgc 15344194  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| ||||| |||| | |||||||||||||||||    
T  15344195 atcttttttcccctttatatggatctaaataagtgatt 15344232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 15433160 - 15433297
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||||| |  || ||||||||||||  |||| |||||||||||||||||| |||||| || ||| |||| |||||    
T  15433160 agtgagagaaactccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccctctgc 15433259  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| ||||| |||| | |||||||||||||||||    
T  15433260 atcttttttcccctttatatggatctaaataagtgatt 15433297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 15524464 - 15524601
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||||| |  || ||||||||||||  |||| |||||||||||||||||| |||||| || ||| |||| |||||    
T  15524464 agtgagagaaactccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccctctgc 15524563  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| ||||| |||| | |||||||||||||||||    
T  15524564 atcttttttcccctttatatggatctaaataagtgatt 15524601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 1236993 - 1236888
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||||||||||||||||||| || || |||||| |||||| |||| |||||||||||||||||| |||||| || ||| | || |||||    
T  1236993 agtgagagaaacttcaacttctctctaagttttccttctctttcgctcattgaggaggggtggttttaggtcattctttgacctaaaataatccctctgc 1236894  T
Q  371 atcttt 376  Q
    ||||||    
T  1236893 atcttt 1236888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 8980986 - 8981124
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||||| || || || ||||||| |  |||| ||||||||||||||||||||||||| || |||||||| | |||    
T  8980986 agtgagagaaactccaacttctctctaagttttcgttctcattcactcgtcgaggaggggtggttttaggtcattttttgacctaaaatcacccctatgc 8981085  T
Q  371 at-ctttctcccc-attatttcgatctaaataagtgatt 407  Q
    || |||| |||||  || |||| ||||||||||||||||    
T  8981086 atcctttttccccttttctttcaatctaaataagtgatt 8981124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 8443764 - 8443683
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatctttc---tccccattatttcgatctaaataagtgatt 407  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||   ||||| || |||||||||||||||||||||    
T  8443764 gggtggttttaggtcattttttaacttagaatca-ccatctgcatctttcttttcccctttctttcgatctaaataagtgatt 8443683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 31013871 - 31013736
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  31013871 agtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctctac 31013772  T
Q  371 atctttctcccc--attatttcgatctaaataagtg 404  Q
    |||||| |||||   || |||| |||||||||||||    
T  31013771 atctttttcccccttttctttcaatctaaataagtg 31013736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 24099560 - 24099425
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||||||||||||||| ||| || || ||||||| ||||  | | ||||||| ||||||||| |||||||| ||||||||||| |||||    
T  24099560 agtgagagaaacttcaacttctctctaggttttctttctctttcaatcatcga-gtagggtggctttaggtca-tttttgacctagaatcacccctctgc 24099463  T
Q  371 atctt-tctccccattatttcgatctaaataagtgatt 407  Q
    || || | ||| | || ||||||| |||||||||||||    
T  24099462 attttgtttcctctttctttcgatttaaataagtgatt 24099425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 8826035 - 8826136
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcaccca-tctgcatctttct--ccccattatttcgatctaaataagtga 405  Q
    ||||||||||||  |||| ||||||||||||||||||||||||  |||||||||||  | || |||||| |  |||| ||||||||||||||||||||||    
T  8826035 tctttcactcatcgaggatgggtggttttaggtcattttttgatctagaatcaccccctttgtatcttttttccccctttatttcgatctaaataagtga 8826134  T
Q  406 tt 407  Q
    ||    
T  8826135 tt 8826136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 18890948 - 18890868
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||||| |||||||||| |||||||| ||||||||| |||||||||| ||| ||||| || |||| ||||||||||||||||    
T  18890948 gggtgattttaggtcaatttttgacctagaatcactcatctgcatcttttttcccctttctttcaatctaaataagtgatt 18890868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 407
Target Start/End: Original strand, 37971086 - 37971219
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    ||||||||||| |||||||||||||| || || || |  |||| ||||  ||||   ||||||||||||||||||||||| ||||||||||| ||| |||    
T  37971086 tgagagaaactccaacttctctctaaattttctttcttcttcattcatcgagga---gtggttttaggtcattttttgacctagaatcacccctctacat 37971182  T
Q  373 ctttct--ccccattatttcgatctaaataagtgatt 407  Q
    |||| |  |||  || |||| ||||||||||||||||    
T  37971183 cttttttccccttttctttcaatctaaataagtgatt 37971219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 41178267 - 41178208
Alignment:
Q  60 tttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaaa 118  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||||    
T  41178267 tttagtaaaattgtcatttcttttgacatcattattacatttcttaatttgtgtgtaaaa 41178208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 7677534 - 7677477
Alignment:
Q  317 tcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatct 374  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  7677534 tcattgaggaggggtggttttaggtcattttttgacctagaatcacccctctacatct 7677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 14916384 - 14916332
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  14916384 aggaggggtggttttaggtcattttt-gacctagaatcacccatctgcatcttt 14916332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 25191366 - 25191261
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || ||   ||||  ||||  |||| ||||||||||||||||||| ||||||||||||||| |    
T  25191366 agtgagagaaactccaacttctctctaaactttctttctcctttgttcatcgaggagaggtgattttaggtcattttttgacctagaatcacccatctac 25191267  T
Q  371 atcttt 376  Q
    ||||||    
T  25191266 atcttt 25191261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 27110764 - 27110659
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||| ||||  | || ||||||||||||||||||||||||  || |||||| ||||| |    
T  27110764 agtgagagaaactccaacttctctctaaactttctttctccttcattcatcgaagatgggtggttttaggtcattttttgatctaaaatcacacatctac 27110665  T
Q  371 atcttt 376  Q
    ||||||    
T  27110664 atcttt 27110659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 29617757 - 29617656
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||| |||||||||||||||| || |  || ||||||||| ||  | ||   || |||||||||||||||||||| || ||||||||||||||    
T  29617757 agtgagagaaatttcaacttctctctaaattttgtttctctttcacttatcgaagagatgttgttttaggtcattttttgacctacaatcacccatctgc 29617658  T
Q  371 at 372  Q
    ||    
T  29617657 at 29617656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 10377486 - 10377620
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||| ||||| |||| |||| |    
T  10377486 agtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaa-caccaatctac 10377584  T
Q  371 atctttctccccat--tatttcgatctaaataagtg 404  Q
    |||||| ||||| |  | |||| |||||||||||||    
T  10377585 atctttttcccccttctctttcaatctaaataagtg 10377620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 33214930 - 33214794
Alignment:
Q  272 gtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcatttttt-gacttagaatcacccatctgc 370  Q
    |||||| ||||||||| ||||||||||  | || || || |||  ||||  |||| ||||||||||||||| |||||| ||||||||||||  ||||| |    
T  33214930 gtgagacaaacttcaatttctctctaaactttctttctccttcgttcatcgaggatgggtggttttaggtcttttttttgacttagaatcattcatctac 33214831  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| ||||  || |||| || |||||||||||||    
T  33214830 atctttttcccttttctttcaatttaaataagtgatt 33214794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 37109446 - 37109351
Alignment:
Q  18 cactactttcaaaacattgcactgatagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtg 113  Q
    |||||||| ||||||||| |||| ||||||||||||| | | |||||| |||||| ||||||||||||| |  || |||||||||||||||| ||||    
T  37109446 cactacttccaaaacattacactaatagtaaataaggctag-tttagtgaaattgccatgtcttttgaccctgttattacatttcttaatttgtgtg 37109351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 2355247 - 2355181
Alignment:
Q  42 atagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaattt 108  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  2355247 atagtaaataaggctagttt-agtaaaattgtcatgtcttttgacacaattattatatttcttaattt 2355181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 41896341 - 41896437
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtgatt 407  Q
    ||||||||||||  |||| | ||| |||||||||| |||||||| ||||||||||||| ||||  ||| | ||| || |||| ||||||||||||||||    
T  41896341 tctttcactcatcgaggatgagtgattttaggtcaatttttgacctagaatcacccatttgca--ttttttccctttctttcaatctaaataagtgatt 41896437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 2271395 - 2271448
Alignment:
Q  60 tttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgt 112  Q
    ||||||||||||||||||| |||||||| |||| |||||||| |||||||||||    
T  2271395 tttagtaaaattgtcatgttttttgacatcattattacatttattaatttatgt 2271448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 17693913 - 17693809
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  ||||| |||| |||| ||||||||||| |||||||| |||||||| || ||| |    
T  17693913 agtgagagaaactccaacttctctctaaactttctttctccttcgttcattgaggaggggttgttttaggtca-tttttgacctagaatcatccctctac 17693815  T
Q  371 atcttt 376  Q
    ||||||    
T  17693814 atcttt 17693809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 45192059 - 45191983
Alignment:
Q  42 atagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaaa 118  Q
    |||||||||||| || ||||  |||||||||||||||||||||||| |||| ||| |||||||||||| ||| |||||    
T  45192059 atagtaaataagattagtttc-gtaaaattgtcatgtcttttgacatcattattatatttcttaatttgtgtataaaa 45191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 20559987 - 20559908
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||||||||| |||||||| ||| ||||||||||| ||| ||| |||  |||  || |||| ||||||||||||||||    
T  20559987 gggtggttttagatcatttttggacctagaatcacccctctacattttttccccttttctttcaatctaaataagtgatt 20559908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 20571549 - 20571470
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||||||||| |||||||| ||| ||||||||||| ||| ||| |||  |||  || |||| ||||||||||||||||    
T  20571549 gggtggttttagatcatttttggacctagaatcacccctctacattttttccccttttctttcaatctaaataagtgatt 20571470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 26432235 - 26432301
Alignment:
Q  45 gtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatg 111  Q
    |||||||||  ||||||| |||| ||||||||||||||| ||| |||| |||||||||||||||||||    
T  26432235 gtaaataagaattgtttt-gtaacattgtcatgtcttttaacatcattattacatttcttaatttatg 26432301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 39655300 - 39655377
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttt 348  Q
    |||||||||||||  | |||||||||||||| || || ||||||||| ||  ||||| |||| |||||||||| ||||    
T  39655300 agtgagagaaactctatcttctctctaagttttctttctctttcacttatcgaggaaaggtgattttaggtcaatttt 39655377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 14545154 - 14545110
Alignment:
Q  320 ttaaggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    ||||||| | ||||||||||||||||||||||| || ||||||||    
T  14545154 ttaaggatgagtggttttaggtcattttttgacctaaaatcaccc 14545110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 47320703 - 47320566
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||||||||||||| |||||| || || |||||| |||||  || | |||||||||||||||||| ||||||||| ||||||   |||||    
T  47320703 agtgagagaaacttcaacttctctttaagttttccttctctttcgctcatcgagaaggggtggttttaggtcattctttgacttaaaatcacaactctgc 47320604  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| ||||| ||  ||||||||||||||||||||    
T  47320603 atcttttttcccctttcgttcgatctaaataagtgatt 47320566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 407
Target Start/End: Complemental strand, 51888516 - 51888381
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    |||||||||||||||||| |||||| ||| || || ||||||||||||  |||| ||||||||||||||||||||||||| | ||||||||| |||  ||    
T  51888516 tgagagaaacttcaacttttctctacgttttctttctctttcactcatcgaggaggggtggttttaggtcattttttgacattgaatcacccctctcaat 51888417  T
Q  373 c-tttctccccattatttcgatctaaataagtgatt 407  Q
    | ||| ||||| || || ||||||||| ||||||||    
T  51888416 cttttatcccctttcttccgatctaaacaagtgatt 51888381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 9643184 - 9643325
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcat-taaggaagggtggttttaggtcattttttgacttagaatcacccatctg 369  Q
    ||||||||||||| ||||||||||||||||| || ||||||||  |||||  |||   ||||||||||| ||||||||||||| ||||||||| ||||||    
T  9643184 agtgagagaaactccaacttctctctaagttttctttatcttttgctcatcgaagagggggtggttttatgtcattttttgacctagaatcactcatctg 9643283  T
Q  370 catc----tttctccccattatttcgatctaaataagtgatt 407  Q
    ||||    ||| ||||  || |||||||||||||||||||||    
T  9643284 catctttttttttcccatttctttcgatctaaataagtgatt 9643325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 22064082 - 22063948
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||||| ||||||||||||||| | || | |||||||||| ||||| |  |  ||||||||||||||||||| ||||||||||| |||||    
T  22064082 agtgagagaaacttcaccttctctctaagttcgctttctatttcactcatcaaggatgactaattttaggtcattttttgacctagaatcacccctctgc 22063983  T
Q  371 at-ctttctccccattatttcgatctaaataagtg 404  Q
    ||  ||| || || || |||| |||||||||||||    
T  22063982 atattttttctcctttctttcaatctaaataagtg 22063948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 407
Target Start/End: Original strand, 36161579 - 36161656
Alignment:
Q  329 ggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||  || |||| ||||||||||||||||    
T  36161579 ggtggttttaggtcattttttgacctagaatcacccatctgcat-tttttcccatttctttcaatctaaataagtgatt 36161656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 2520584 - 2520689
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  2520584 agtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctctac 2520683  T
Q  371 atcttt 376  Q
    ||||||    
T  2520684 atcttt 2520689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 9178165 - 9178269
Alignment:
Q  272 gtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgca 371  Q
    |||||||||||||||  ||||||||||  | || || || |||| |||| ||||| ||||||| ||||||||||||||||| ||||||||||| ||| ||    
T  9178165 gtgagagaaacttcagtttctctctaaaatttctttctccttcattcatcaaggaggggtggtcttaggtcattttttgacctagaatcacccttctaca 9178264  T
Q  372 tcttt 376  Q
    |||||    
T  9178265 tcttt 9178269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 27651772 - 27651892
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctcccca-tta 386  Q
    ||||||||||| || || |  ||||||||||||  |||| ||||| | |||||||| |||||||| ||| ||||||||||||||||||| | |||| ||     
T  27651772 cttctctctaaattttcttcctctttcactcatcgaggaggggtgatgttaggtcaatttttgacctaggatcacccatctgcatcttttttcccatttc 27651871  T
Q  387 tttcgatctaaataagtgatt 407  Q
    |||| ||||||||||||||||    
T  27651872 tttcaatctaaataagtgatt 27651892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 1019117 - 1019058
Alignment:
Q  60 tttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaaa 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  1019117 tttagtaaaattgtcatgtcttttgacaccattattacatttctaaatttgtgtgtaaaa 1019058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 22039099 - 22038965
Alignment:
Q  272 gtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgca 371  Q
    ||||||||||||| ||||| | || ||||| || || ||||||||||||  || | |||||||||||||||| |||| ||  ||||||||||| | ||||    
T  22039099 gtgagagaaactttaacttttttcaaagttttctttctctttcactcatcgagcaggggtggttttaggtcaattttggatctagaatcaccc-tttgca 22039001  T
Q  372 tctttctccccattatttcgatctaaataagtgatt 407  Q
    ||||| | ||| || |||| ||||||||||||||||    
T  22039000 tcttttttccctttctttctatctaaataagtgatt 22038965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 36204682 - 36204582
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||| |||| || |||||||||| ||| || || ||||||| |||| ||||| || ||||||||||||||||||| || ||||||||||| |||||    
T  36204682 agtgagaggaactccaccttctctctaggttttctttctctttcaatcatcaaggatggatggttttaggtcatttttt-acctagaatcacccctctgc 36204584  T
Q  371 at 372  Q
    ||    
T  36204583 at 36204582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 43510010 - 43510111
Alignment:
Q  275 agagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatct 374  Q
    |||||||||||||||||||| |||  | ||||| || |||  ||||  | |||||||||||||||||||||||||||| ||||||||| | ||| |||||    
T  43510010 agagaaacttcaacttctctttaaactttcattctccttcgttcatcgaagaagggtggttttaggtcattttttgacctagaatcactcctctacatct 43510109  T
Q  375 tt 376  Q
    ||    
T  43510110 tt 43510111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 22300655 - 22300754
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||||||||| |||||||||||||| || |  || |||||||||| |  |||| | ||||||||||||||||||||||| || |||||||| | ||||||    
T  22300655 gagagaaactccaacttctctctaaattttatttctctttcactcgtcgaggaggagtggttttaggtcattttttgacctaaaatcacccctttgcatc 22300754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 22558764 - 22558662
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||||||||| ||| ||||||||||  | || || || |||  ||||| |||| ||||||||||||||||||||||||| ||||||||||  ||| ||||    
T  22558764 gagagaaactccaatttctctctaaactttctttctccttcgttcattgaggaggggtggttttaggtcattttttgacatagaatcacctctctacatc 22558665  T
Q  374 ttt 376  Q
    |||    
T  22558664 ttt 22558662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 26633972 - 26633838
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || |  |||  ||||| |||| ||||||| ||||||||||||||||| ||||||||||| | | |    
T  26633972 agtgagagaaactccaacttctctctaaactttctttcttcttcgttcattgaggaggggtggtcttaggtcattttttgacctagaatcacccctatac 26633873  T
Q  371 atctttctcc-ccattatttcgatctaaataagtg 404  Q
    |||||| ||| |  || |||| |||||||||||||    
T  26633872 atctttttcctcttttctttcaatctaaataagtg 26633838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 4143004 - 4142951
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  4143004 aggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttt 4142951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 13633921 - 13634025
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || ||| |||||  ||||  ||||||||||||||| |||||||| ||||||||||| ||| |    
T  13633921 agtgagagaaactccaacttctctctaaactttctttctccttcgctcatcgaggagtggtggttttaggtca-tttttgacatagaatcacccctctac 13634019  T
Q  371 atcttt 376  Q
    ||||||    
T  13634020 atcttt 13634025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 32766378 - 32766426
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  32766378 gggtggttttaggtcattttttgacctagaatcacccctctacatcttt 32766426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 48257699 - 48257647
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctt 375  Q
    |||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  48257699 aggaggggtggttttatgtcattttttgacctagaatcacccatctacatctt 48257647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 48351482 - 48351376
Alignment:
Q  272 gtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttga--cttagaatcacccatctg 369  Q
    ||||||| |||| |||||||||| | ||||||| || | |||||||||| ||||| |||| |||||||||| |||||| |  | ||||||||||||||||    
T  48351482 gtgagagcaactccaacttctctttcagttctctttct-tttcactcatcaaggaggggtagttttaggtcgtttttttaaccctagaatcacccatctg 48351384  T
Q  370 catctttc 377  Q
    ||| ||||    
T  48351383 catttttc 48351376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 53810887 - 53810946
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctcccc 382  Q
    |||| ||||||||||||||||||||||||| || |||||||| ||| ||||||| |||||    
T  53810887 aggaggggtggttttaggtcattttttgacctataatcacccctctacatctttttcccc 53810946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 9713708 - 9713786
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcatttttt 349  Q
    |||||||||||||  | ||||||||||||||||| || ||||||||||||  |||| ||||| ||||| ||| ||||||    
T  9713708 agtgagagaaactctaccttctctctaagttctctttctctttcactcatcgaggaggggtgattttatgtcttttttt 9713786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 12199951 - 12199882
Alignment:
Q  312 ttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctcccc 382  Q
    |||| ||||| ||||| |||||| ||| ||||||||| ||| ||||||||||||||||||||||| |||||    
T  12199951 ttcattcattgaggaatggtggtattaagtcattttt-gacatagaatcacccatctgcatctttttcccc 12199882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 18935594 - 18935698
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||    |||||||||||||| || |  |||||| |||||  |||| ||||| ||| |||||| |||||||| ||||||||||| |||||    
T  18935594 agtgagagaaactctgtcttctctctaagttttcttcctctttcgctcatcgaggaggggtgatttaaggtcaatttttgacctagaatcaccc-tctgc 18935692  T
Q  371 atcttt 376  Q
    ||||||    
T  18935693 atcttt 18935698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 19853813 - 19853709
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || ||  | |||| ||||  |||| ||||||||||||||||| ||||||| ||||||||||| ||| |    
T  19853813 agtgggagaaactccaacttctctctaaactttctttccccttcattcatcgaggaggggtggttttaggtcat-ttttgacctagaatcacccctctac 19853715  T
Q  371 atcttt 376  Q
    ||||||    
T  19853714 atcttt 19853709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 22611043 - 22611095
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  22611043 aggaggggtggttttaggtcattttt-gacctagaatcacccatctacatcttt 22611095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 39009555 - 39009610
Alignment:
Q  60 tttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgt 114  Q
    |||||||||||||| ||||| ||||||| |||| |||||||||||||||| |||||    
T  39009555 tttagtaaaattgtgatgtcctttgacatcattattacatttcttaatttgtgtgt 39009610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 55227827 - 55227906
Alignment:
Q  296 taagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctt 375  Q
    ||||||||| || ||||||||||||| |  | | |||||||||||| |||||||||| |||||| | |||||| ||||||    
T  55227827 taagttctctttctctttcactcatttattaggagtggttttaggtgattttttgacctagaattatccatctacatctt 55227906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 47158054 - 47158139
Alignment:
Q  290 tctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||| ||||||| | |||||||||||||||  | || || || ||||| |||||||||| |||||||||||| ||| |||||||||    
T  47158054 tctctttaagttcactttatctttcactcatcgatgatggatgattttacgtcatttttt-acttagaatcactcatttgcatcttt 47158139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 5119145 - 5119281
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtca-ttttttgacttagaatcacccatctg 369  Q
    ||||||| ||| |||||||||| |||||  | |  || || |||| |||| ||||| ||||||||||| |||| |||||| || ||||||||||| |||     
T  5119145 agtgagataaatttcaacttctttctaaactttatttctccttcattcatcaaggaggggtggttttatgtcattttttttacctagaatcacccctcta 5119244  T
Q  370 catctttctcccc--attatttcgatctaaataagtg 404  Q
    ||||||| |||||   || |||| |||||||||||||    
T  5119245 catctttttccccctcttctttcaatctaaataagtg 5119281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 359
Target Start/End: Original strand, 13863164 - 13863193
Alignment:
Q  330 gtggttttaggtcattttttgacttagaat 359  Q
    ||||||||||||||||||||||||||||||    
T  13863164 gtggttttaggtcattttttgacttagaat 13863193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 35348170 - 35348247
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattatttcgatctaaataagtg 404  Q
    ||||| ||||||||||||||||||| ||||||||||  ||| |||| ||| ||||  || |||| |||||||||||||    
T  35348170 gggtgattttaggtcattttttgacctagaatcacctctctacatcttttttcccttttctttcaatctaaataagtg 35348247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 21223744 - 21223712
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttct 303  Q
    |||||||||||||||| ||||||||||||||||    
T  21223744 agtgagagaaacttcatcttctctctaagttct 21223712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 21248483 - 21248515
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttct 303  Q
    |||||||||||||||| ||||||||||||||||    
T  21248483 agtgagagaaacttcatcttctctctaagttct 21248515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 21248670 - 21248638
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttct 303  Q
    |||||||||||||||| ||||||||||||||||    
T  21248670 agtgagagaaacttcatcttctctctaagttct 21248638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 22806350 - 22806425
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcatttttt 349  Q
    ||||||||||||||  |||||||| ||||||| || |  |||||||||| ||| |||||| ||||| ||||||||||    
T  22806350 tgagagaaacttcacattctctcttagttctctttcttcttcactcattgagg-agggtgtttttatgtcatttttt 22806425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 29121920 - 29121876
Alignment:
Q  331 tggttttaggtcattttttgacttagaatcacccatctgcatctt 375  Q
    |||||||||||||||||||||| || |||||| ||||| ||||||    
T  29121920 tggttttaggtcattttttgacctaaaatcactcatctacatctt 29121876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 56040890 - 56040842
Alignment:
Q  329 ggtggttttaggtcatttttt-gacttagaatcacccatctgcatcttt 376  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| |||||||    
T  56040890 ggtggttttaggtcatttttttgacctagaatcacccctctacatcttt 56040842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 629208 - 629070
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||  |||||||||||||||| || ||  |||||||||||  |||| |||||||||||||||||| |||||| || ||||| || |||||    
T  629208 agtgagagaaactctaacttctctctaagttttccttccctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaatcatccttctgc 629109  T
Q  371 atc--tttctccccattatttcgatctaaataagtgatt 407  Q
    |||  ||| | ||| || |||||||||||||||||||||    
T  629108 atcttttttttccccttctttcgatctaaataagtgatt 629070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 33579655 - 33579792
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||||||||||||||||  | || ||||| |||  ||||  | |||||||||||||| ||||||||||||| ||||||||||| ||| |    
T  33579655 agtgagagaaacttcaacttctctctaaactttctttatccttcgttcatcgaagaagggtggttttaagtcattttttgacctagaatcacccctctac 33579754  T
Q  371 atctttctccccatta-tttcgatctaaataagtgatt 407  Q
    |||||| | ||  ||  |||| ||||||||||||||||    
T  33579755 atcttttttccattttctttcaatctaaataagtgatt 33579792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 21290121 - 21289985
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||    |||||||||||||| || |  ||||||||||||  ||||  |||| |||||||||| |||||||| ||||||||||| |||||    
T  21290121 agtgagagaaactctgtcttctctctaagttttcttcctctttcactcatggaggagaggtgattttaggtcaatttttgacctagaatcacccctctgc 21290022  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| | ||| || |||| ||| ||||||||||||    
T  21290021 atcttttttccccttctttcaatccaaataagtgatt 21289985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 14859287 - 14859362
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcatttttt 349  Q
    |||||||||||||||||||||||||||| ||||| | ||||||| ||| |||| ||||| ||||||||||||||||    
T  14859287 gagagaaacttcaacttctctctaagttttcattctttttcacttattgaggaggggtgattttaggtcatttttt 14859362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 7546397 - 7546536
Alignment:
Q  271 agtgagagaaacttcaa-cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctg 369  Q
    ||||||||||| ||||| |||||||||||||| || || ||| ||||||||  |||| ||||| |||||||||| |||||||  ||||||||||| ||||    
T  7546397 agtgagagaaa-ttcaatcttctctctaagttttctttctctctcactcatcgaggaggggtgattttaggtcaatttttgatctagaatcacccctctg 7546495  T
Q  370 catc---tttctccccattatttcgatctaaataagtgatt 407  Q
    ||||   ||| ||||| || |||| ||||||||||||||||    
T  7546496 catcttttttttcccccttctttcaatctaaataagtgatt 7546536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 16235244 - 16235342
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtgatt 407  Q
    ||||||||||||| |||| | ||| |||||||||| |||||||| ||||||||| ||||||||||||| | ||  || |||| ||||||||||||||||    
T  16235244 tctttcactcattgaggatgagtgattttaggtcaatttttgacctagaatcactcatctgcatcttttttccttttttttcaatctaaataagtgatt 16235342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 10232857 - 10232962
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  |||| ||||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  10232857 agtgggagaaactccaacttctctctaaactttctttctccttcgttcatcaaggaggggtggttttaggtcattttttgacctagaatcacccctctac 10232956  T
Q  371 atcttt 376  Q
    ||||||    
T  10232957 atcttt 10232962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 50194585 - 50194448
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||||| || || |||||||||| |  || | | |||||||||| |||||||||||| || |||||||  |||||    
T  50194585 agtgagagaaactccaacttctctctaagttttcgttctctttcactcgtcgagaaggagtggttttagatcattttttgacctaaaatcacctctctgc 50194486  T
Q  371 at-ctttctccccattatttcgatctaaataagtgatt 407  Q
    || |||| ||||   | |||| ||||||||||||||||    
T  50194485 atcctttttcccttctctttcaatctaaataagtgatt 50194448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 54918227 - 54918286
Alignment:
Q  60 tttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaaa 118  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  54918227 tttagtaaaattgtcatgtcttttgacatcattattaaatttcttaatttatgtgtaaaa 54918286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 361
Target Start/End: Original strand, 38545622 - 38545712
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatca 361  Q
    ||||||||||||||||||||||||||||  | || || || |||  ||||| ||||  |||||||||||||||||||||||| ||||||||    
T  38545622 agtgagagaaacttcaacttctctctaaactttctttctccttcgttcattgaggagtggtggttttaggtcattttttgacctagaatca 38545712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 40487112 - 40487246
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||| ||||||||||||||||||| ||||||||| | ||| |    
T  40487112 agtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtgattttaggtcattttttgacctagaatcactcttctac 40487211  T
Q  371 atctttctcccc-attatttcgatctaaataagtg 404  Q
    |||||| |||||  || |||| |||||||||||||    
T  40487212 atctttttccccttttctttcaatctaaataagtg 40487246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 375
Target Start/End: Complemental strand, 12050947 - 12050846
Alignment:
Q  274 gagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||||||||| |||||||||||||| || || || || |||  |||| ||||| | ||||||||| || ||||||||| |||||||||||| ||| ||||    
T  12050947 gagagaaactccaacttctctctaaattttctttctccttcgttcatcaaggatgtgtggttttaagttattttttgatttagaatcacccctctacatc 12050848  T
Q  374 tt 375  Q
    ||    
T  12050847 tt 12050846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 45568746 - 45568641
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||  |||||| | |||||| |    
T  45568746 agtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgatctagaataatccatctac 45568647  T
Q  371 atcttt 376  Q
    ||||||    
T  45568646 atcttt 45568641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 47895938 - 47896043
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  ||||  |||| |||||||| ||| |||||||||||| ||||||||||| ||| |    
T  47895938 agtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttatagatcattttttgacctagaatcacccctctac 47896037  T
Q  371 atcttt 376  Q
    ||||||    
T  47896038 atcttt 47896043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 8914508 - 8914596
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||||||||||| || |  ||||||||||||  || | ||||| |||||||||| |||||||| |||||| |||| |||||||||||    
T  8914508 cttctctctaagttttcttcctctttcactcatcgagaaggggtgattttaggtcaatttttgacctagaataacccctctgcatcttt 8914596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 43016642 - 43016737
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtca--ttttttgacttagaatcaccc 364  Q
    |||||||||||||  ||||||||||||| || || || ||||||  ||||  |||||||||||||||||||||  | ||||||| |||||||||||    
T  43016642 agtgagagaaactctaacttctctctaaattttctttctctttcgttcatcgaggaagggtggttttaggtcagttcttttgacctagaatcaccc 43016737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 3785706 - 3785745
Alignment:
Q  337 taggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  3785706 taggtcattttttgacttagaatcacacatctgcatcttt 3785745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 376
Target Start/End: Complemental strand, 6954992 - 6954893
Alignment:
Q  277 agaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||||| ||||||||||||||  | || || || |||  ||| | |||| ||||| ||||||||||||||||||| ||||||||||| ||| |||||||    
T  6954992 agaaactccaacttctctctaaactttctttctccttcgttcactgaggaggggtgattttaggtcattttttgacctagaatcacccctctacatcttt 6954893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 7449201 - 7449115
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatc 360  Q
    ||||||||||| ||||||||||| || || |  || ||||||  |||||||||| || |||||||||||||||||||||| |||||||    
T  7449201 tgagagaaactccaacttctctcaaacttttt-ttctctttcgttcattaaggagggctggttttaggtcattttttgacatagaatc 7449115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 7457343 - 7457257
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatc 360  Q
    ||||||||||| ||||||||||| || || |  || ||||||  |||||||||| || |||||||||||||||||||||| |||||||    
T  7457343 tgagagaaactccaacttctctcaaacttttt-ttctctttcgttcattaaggagggctggttttaggtcattttttgacatagaatc 7457257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 9797774 - 9797727
Alignment:
Q  329 ggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  9797774 ggtggttttaggtcattttttgacctagaatcacccctctacatcttt 9797727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 20465267 - 20465134
Alignment:
Q  272 gtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgca 371  Q
    ||||||||||||||||||||  | ||| || || || || |||| |||| ||| | ||||||||||| ||||||||| ||| ||||||||||| ||| |     
T  20465267 gtgagagaaacttcaacttccttttaaatt-tctttctccttcattcatcaagtaggggtggttttatgtcattttt-gacatagaatcacccctctccc 20465170  T
Q  372 tctttctccccattatttcgatctaaataagtgatt 407  Q
    ||||| ||||| || |||| || |||||||||||||    
T  20465169 tctttttcccctttttttcaatataaataagtgatt 20465134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 9998253 - 9998359
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtca-ttttttgacttagaatcacccatctg 369  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||  |||| |||||||||||||||| ||||||||| ||||||||||| |||     
T  9998253 agtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcatttttttgacctagaatcacccctcta 9998352  T
Q  370 catcttt 376  Q
    |||||||    
T  9998353 catcttt 9998359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 32701342 - 32701392
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatctttct 378  Q
    ||||||||||||||||||||||||| |||||||| || ||| |||||||||    
T  32701342 gggtggttttaggtcattttttgacctagaatcatccctctacatctttct 32701392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 26187345 - 26187247
Alignment:
Q  18 cactactttcaaaacattgcactgatagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaa 116  Q
    |||||||  |||||||||||||  |||||||||||| || | ||||||| ||||||||||| |||||||| |||| |||||||| ||||||| |||||||    
T  26187345 cactactaccaaaacattgcaccaatagtaaataagattag-tttagtataattgtcatgt-ttttgacatcattattacattt-ttaatttgtgtgtaa 26187249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 38142358 - 38142463
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||  |||| | |||||| || || ||||||| |||| ||| | | ||| |||||| |||||||||||| || |||||| |||||||    
T  38142358 agtgagagaaactccacattctttttaagttttctttctctttcattcatcaagaatgagtgattttagttcattttttgacctaaaatcactcatctgc 38142457  T
Q  371 atcttt 376  Q
    ||||||    
T  38142458 atcttt 38142463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 40556550 - 40556591
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  40556550 aggaggggtggttttaggtcattttttgacctagaatcaccc 40556591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 47042354 - 47042249
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||| ||||||| ||||||||||||||  | |  ||||| |||  ||||  |||| |||||||||||||||||||||| || || |||||||| ||| |    
T  47042354 agtgaaagaaactccaacttctctctaaactttatttatccttcgttcatcgaggaggggtggttttaggtcattttttaacctataatcacccctctac 47042255  T
Q  371 atcttt 376  Q
    ||||||    
T  47042254 atcttt 47042249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 54148827 - 54148880
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||||||| || |||||||| ||| |||||||    
T  54148827 aggaggggtggttttaggtcattttttgacctacaatcacccctctacatcttt 54148880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 21431412 - 21431546
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||  |||| |||||||||||||||| |||||||| || |||||||| ||| |    
T  21431412 agtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtca-tttttgacctaaaatcacccctctac 21431510  T
Q  371 atctttctcccca--ttatttcgatctaaataagtg 404  Q
    |||||| | ||||  || |||| |||||||||||||    
T  21431511 atcttttttcccattttctttcaatctaaataagtg 21431546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 407
Target Start/End: Complemental strand, 51303923 - 51303804
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccatta 386  Q
    |||||||||||||| || |  ||||| ||||||  |||| || || ||||| |||| |||||||| ||||||||||| |||||||| ||| ||||| ||     
T  51303923 cttctctctaagttttcttcctcttttactcatcgaggagggatgattttatgtcaatttttgacctagaatcaccc-tctgcatcttttttcccctttt 51303825  T
Q  387 tttcgatctaaataagtgatt 407  Q
    |||| ||| ||||||||||||    
T  51303824 tttcaatccaaataagtgatt 51303804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 53808164 - 53808096
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttag 339  Q
    ||||||||||||| ||||||||||||||||| || || |||||| |||||  |||| ||||| ||||||    
T  53808164 agtgagagaaactccaacttctctctaagttttccttctctttcgctcatcgaggaggggtgattttag 53808096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 53508047 - 53508113
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||| ||||| |||||| |||||| |||||||| |||||||| || |||||||||||||| |||||    
T  53508047 tctttcgctcatcaaggaatggtggtcttaggtca-tttttgacctaaaatcacccatctgcgtcttt 53508113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 4821651 - 4821696
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    ||||||||||||||||||||||||| || |||||| | ||||||||    
T  4821651 gggtggttttaggtcattttttgacctataatcactcctctgcatc 4821696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 29921856 - 29921977
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtgg-ttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccatt 385  Q
    |||||||||||||| || || ||||||| || |  |||| |||||| ||||||||||||||||||  || ||||||   ||| |||| ||| ||||| ||    
T  29921856 cttctctctaagttttctttctctttcattcgtcgaggaggggtggtttttaggtcattttttgagctaaaatcacttctctccatcttttttccccttt 29921955  T
Q  386 atttcgatctaaataagtgatt 407  Q
     |||| ||||||||||||||||    
T  29921956 ctttcaatctaaataagtgatt 29921977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 29971009 - 29971130
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtgg-ttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccatt 385  Q
    |||||||||||||| || || ||||||| || |  |||| |||||| ||||||||||||||||||  || ||||||   ||| |||| ||| ||||| ||    
T  29971009 cttctctctaagttttctttctctttcattcgtcgaggaggggtggtttttaggtcattttttgagctaaaatcacttctctccatcttttttccccttt 29971108  T
Q  386 atttcgatctaaataagtgatt 407  Q
     |||| ||||||||||||||||    
T  29971109 ctttcaatctaaataagtgatt 29971130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 48650985 - 48650944
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    |||| ||||||||||||||||||||||||| || ||||||||    
T  48650985 aggaggggtggttttaggtcattttttgacctaaaatcaccc 48650944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 36461674 - 36461595
Alignment:
Q  330 gtggttttaggtcattttttgacttagaatcacccatctgcatctttct--ccccattatttcgatctaaataagtgatt 407  Q
    ||||||||||||||||||||||| || | |||||| ||| ||||||| |  |||  || |||| ||||||||||||||||    
T  36461674 gtggttttaggtcattttttgacctatattcacccctctacatcttttttccccttttctttcaatctaaataagtgatt 36461595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 32192011 - 32191896
Alignment:
Q  294 tctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctcccc--attatttcg 391  Q
    |||||||| || || ||||||| |||| ||||| ||||||||||||||| ||||||||  || |||||||| ||||||||||| |||||   ||||||||    
T  32192011 tctaagttttctttctctttcattcatcaaggaggggtggttttaggtccttttttgatctacaatcacccttctgcatctttttcccccttttatttcg 32191912  T
Q  392 atctaaataagtgatt 407  Q
    ||||||||||||||||    
T  32191911 atctaaataagtgatt 32191896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 406
Target Start/End: Complemental strand, 27097912 - 27097776
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgact-tagaatcacccatctg 369  Q
    ||||||||||||||||  ||||||||||||| || || ||||||||||||| |||||| ||||||||||||| ||||||   | ||||||||| ||||||    
T  27097912 agtgagagaaacttcacattctctctaagttttctttctctttcactcattcaggaagagtggttttaggtctttttttttatatagaatcactcatctg 27097813  T
Q  370 catctttctccccattatttcgatctaaataagtgat 406  Q
     ||| || | |   || ||||||||||||||||||||    
T  27097812 aatcatttttcattttctttcgatctaaataagtgat 27097776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 30493322 - 30493455
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| |||| ||||| |||||| || || |||||||||| |  | | ||||||||||| |||||||||||||| ||||||||||||  |||    
T  30493322 agtgagagaaactccaacctctctttaagttttctttttctttcactcgtcgaag-agggtggttttcggtcattttttgacctagaatcaccca--tgc 30493418  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| | ||| || |||| | ||||||||||||||    
T  30493419 atcttttttccctttctttcaaactaaataagtgatt 30493455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 1523196 - 1523331
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||  |  ||||||||||||| |  || |||||||| ||| ||||| ||||| |||||||||| |||||||| ||||||||||| |||||    
T  1523196 agtgagagaaactctacattctctctaagttttatttctctttcacacatgaaggaggggtgattttaggtcaatttttgacctagaatcaccc-tctgc 1523294  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    || ||| || |  || |||| ||||||||||||||||    
T  1523295 atttttttctcttttctttcaatctaaataagtgatt 1523331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 12170283 - 12170388
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| |||||||||||||   | || || || |||  ||||  |||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  12170283 agtgagagaaactccaacttctctctagactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctctac 12170382  T
Q  371 atcttt 376  Q
    ||||||    
T  12170383 atcttt 12170388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 3913820 - 3913741
Alignment:
Q  327 agggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccat--tatttcgatctaaataagtg 404  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||||| | |||||  | |||| |||||||||||||    
T  3913820 agggtggttttaggtcattttttgacctagaatcacccctccgcatcttttttcccattctctttcaatctaaataagtg 3913741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 20220735 - 20220830
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtg 404  Q
    ||||||| ||||| |||  || || ||||| ||||||||||||  | ||||||||||||||||||||| ||||| || ||||||| ||||||||||    
T  20220735 tctttcattcattgagggtggatgattttatgtcattttttgatatggaatcacccatctgcatctttttcccctttctttcgatttaaataagtg 20220830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 22114719 - 22114814
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtg 404  Q
    ||||||| ||||| |||  || || ||||| ||||||||||||  | ||||||||||||||||||||| ||||| || ||||||| ||||||||||    
T  22114719 tctttcattcattgagggtggatgattttatgtcattttttgatatggaatcacccatctgcatctttttcccctttctttcgatttaaataagtg 22114814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 376
Target Start/End: Complemental strand, 31852474 - 31852371
Alignment:
Q  273 tgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    ||||| |||||| ||||||||| |||| |||| || || || |||||| ||||| |||||||||||||| ||| |||  | || ||||||||||||||||    
T  31852474 tgagataaactttaacttctctttaagctctctttctcatttactcatcaaggaggggtggttttaggttattgtttagcctaaaatcacccatctgcat 31852375  T
Q  373 cttt 376  Q
    ||||    
T  31852374 cttt 31852371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 385
Target Start/End: Original strand, 23128406 - 23128520
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| ||||||||  |||||||||||||  | || || || |||  ||||| |||| || | |||||||||||||||||||| ||||||||||| ||| |    
T  23128406 agtgggagaaactctaacttctctctaaactttctttctccttcgttcattgaggagggatagttttaggtcattttttgacctagaatcacccctctac 23128505  T
Q  371 atctttctccccatt 385  Q
    |||||| ||||||||    
T  23128506 atctttttccccatt 23128520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 33053470 - 33053365
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||| |||||||| || ||| |    
T  33053470 agtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcatccctctac 33053371  T
Q  371 atcttt 376  Q
    ||||||    
T  33053370 atcttt 33053365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 7976453 - 7976366
Alignment:
Q  284 tcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    ||||||| |||||||||| || || | ||||||||||  || | ||||||||||||||||| ||||||| ||||||||| |||||||||    
T  7976453 tcaacttttctctaagttttctttctttttcactcatcgagcatgggtggttttaggtcat-ttttgacctagaatcactcatctgcat 7976366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 34222653 - 34222717
Alignment:
Q  340 gtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtg 404  Q
    |||||||||| || ||||||||||| ||| ||||||| ||||| || ||||||||||||||||||    
T  34222653 gtcattttttaacctagaatcacccctctacatctttttcccctttctttcgatctaaataagtg 34222717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 4010802 - 4010704
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctg 369  Q
    |||||||||||||||| |||||||||||||| || || || || | | ||| |||| | |||  ||||| |||||||||||| ||||||||||| ||||    
T  4010802 agtgagagaaacttcatcttctctctaagttttctttctcctttatttattgaggaggagtgactttagatcattttttgacctagaatcacccctctg 4010704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 14801624 - 14801708
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    |||||||||||||| || |  ||||||||||||  || | ||||| |||||||||| |||||||| |||||| |||| |||||||    
T  14801624 cttctctctaagttttcttcctctttcactcatcgagaaggggtgattttaggtcaatttttgacctagaataacccctctgcat 14801708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 30894476 - 30894527
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatct 374  Q
    |||| |||||||||||| |||||||||||| ||||||||||| ||| |||||    
T  30894476 aggaggggtggttttagatcattttttgacctagaatcacccctctacatct 30894527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 32059755 - 32059829
Alignment:
Q  329 ggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagt 403  Q
    |||||||||| |||||| |||||| |||||||| || ||| ||||||| ||||  || |||| ||||||||||||    
T  32059755 ggtggttttaagtcattgtttgacctagaatcatccttctacatctttttcccttttctttcaatctaaataagt 32059829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 34018409 - 34018451
Alignment:
Q  332 ggttttaggtcattttttgacttagaatcacccatctgcatct 374  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||    
T  34018409 ggttttaggtcattttttgacctagaatcacccctctacatct 34018451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 29320112 - 29320059
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||| ||||||  ||||||||||| ||| |||||||    
T  29320112 aggatgggtggttttaggtcatattttgatctagaatcacccctctacatcttt 29320059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 403
Target Start/End: Original strand, 14801032 - 14801128
Alignment:
Q  308 atctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcat-ctttctccccattatttcgatctaaataagt 403  Q
    |||||||||||||| ||||  |||| |||||||| | |||||||  ||||||||||| |||| ||  ||| ||||| || |||| ||||||||||||    
T  14801032 atctttcactcattgaggagaggtgattttaggttaatttttgatctagaatcacccctctgtatattttttcccctttctttcaatctaaataagt 14801128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 30776511 - 30776555
Alignment:
Q  328 gggtggttttaggtcattttttgacttagaatcacccatctgcat 372  Q
    ||||| |||||||||| |||||||| ||||||||||| |||||||    
T  30776511 gggtgattttaggtcaatttttgacctagaatcacccctctgcat 30776555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 15279 - 15413
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||||||||||||||||  | || || || |||  || |  |||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  15279 agtgagagaaacttcaacttctctctaaactttctttctccttcgttcttcgaggaggggtggttttaggtcattttttgacctagaatcacccctctac 15378  T
Q  371 atctttctcccc-attatttcgatctaaataagtg 404  Q
    |||||| |||||  || |||| |||||||||||||    
T  15379 atctttttccccttttctttcaatctaaataagtg 15413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 14211020 - 14211154
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||    |||||||||||||| || |  ||||||||||||  |||| ||||| |||||||||| |||||||| ||||||||||| |||||    
T  14211020 agtgagagaaactctgtcttctctctaagttttcttcctctttcactcatcgagga-gggtgattttaggtcaatttttgacctagaatcacccctctgc 14211118  T
Q  371 atctttctccccattatttcgatctaaataagtgatt 407  Q
    |||||| | ||| || |||| ||||||||||||||||    
T  14211119 atcttt-ttccctttctttcaatctaaataagtgatt 14211154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 6012440 - 6012335
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  6012440 agtgggagaaactccaacttctctctaaactttctttctccttcgttcattgaggaggggtggttttaggtcattttttgacatagaatcacccctctac 6012341  T
Q  371 atcttt 376  Q
    ||||||    
T  6012340 atcttt 6012335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 38597584 - 38597721
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| ||||||||||||||  | || || || |||  ||||  |||| |||||||||||||| |||||||||| ||||||||||| ||| |    
T  38597584 agtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggttattttttgacctagaatcacccctctac 38597683  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| |||| ||| |||| || |||||||||||||    
T  38597684 atcttttttccctattctttcaatttaaataagtgatt 38597721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 39567082 - 39567219
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||  |  ||||||| |||||| || |  ||||||||||||  |||| ||||| |||||||||| |||||||| ||||||||| | |||||    
T  39567082 agtgagagaaacaccgtcttctctttaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacgcctctgc 39567181  T
Q  371 atctttct-ccccattatttcgatctaaataagtgatt 407  Q
    |||||| | |||| || |||| ||||||||||||||||    
T  39567182 atctttttccccctttctttcaatctaaataagtgatt 39567219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 7036014 - 7036119
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||  |||||||||||||  | || || || |||| |||| ||||  ||||||||||||||||||||||||| || |||||| ||||| |    
T  7036014 agtgagagaaactcaaacttctctctaaactttctttctccttcattcatcaaggtggggtggttttaggtcattttttgacctaaaatcactcatctac 7036113  T
Q  371 atcttt 376  Q
    ||||||    
T  7036114 atcttt 7036119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 407
Target Start/End: Complemental strand, 2979576 - 2979477
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||||||||||||  |||| ||||| |||||||||| |||||||| || |||||||| |||||||| ||| ||| | || |||| ||||||||||||||||    
T  2979576 tctttcactcatcgaggaggggtgattttaggtcaatttttgacctataatcacccctctgcatcttttttcctctttctttcaatctaaataagtgatt 2979477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 8985239 - 8985169
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggt 341  Q
    ||||||||||||| ||||||||||||||||| || || |||||||||| || |||| ||||| ||||||||    
T  8985239 agtgagagaaactccaacttctctctaagttttcgttctctttcactcgtttaggaggggtgattttaggt 8985169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 31392007 - 31391954
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  31392007 aggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttt 31391954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 404
Target Start/End: Original strand, 38007196 - 38007277
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtg 404  Q
    |||| ||||||||||||||||||||||||| | ||||||||| ||| ||||||| ||||  || |||| || ||||||||||    
T  38007196 aggaggggtggttttaggtcattttttgacctcgaatcacccctctacatctttttcccttttctttcaatttaaataagtg 38007277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 13007015 - 13007150
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||| ||||||||||||||  | || || || |||  ||||  ||||  |||||||||||||||||||||||| ||||||||||| ||| |    
T  13007015 agtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggagaggtggttttaggtcattttttgacctagaatcacccctctac 13007114  T
Q  371 atctttctcccca--ttatttcgatctaaataagtg 404  Q
    | |||| | ||||  || |||| |||||||||||||    
T  13007115 accttttttcccattttctttcaatctaaataagtg 13007150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 34945262 - 34945313
Alignment:
Q  325 gaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||| |||||||    
T  34945262 gaaggatggttttaggtcattttttgacctagaatcacccttctacatcttt 34945313  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 9114022 - 9113913
Alignment:
Q  276 gagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctt 375  Q
    ||||||||  |||||||||||||  | || || ||||||  ||||  |||| ||||| |||||||||||||||| || ||||||||||| ||| ||||||    
T  9114022 gagaaactctaacttctctctaaactttctttctctttcgttcatcgaggaggggtgattttaggtcattttttaacctagaatcacccctctacatctt 9113923  T
Q  376 tctccccatt 385  Q
    | | ||||||    
T  9113922 ttttcccatt 9113913  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 10332799 - 10332750
Alignment:
Q  327 agggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||||||||||| |||||||||||| |||||||||| | |||||||||||    
T  10332799 agggtggttttaagtcattttttgatttagaatcacacctctgcatcttt 10332750  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 26878380 - 26878246
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||||||||||||||||||  | || || || |||| ||||  ||||  |||||||||| |||| |||||||  ||||||||||  ||| |    
T  26878380 agtgagagaaacttcaacttctctctaaactttctttctccttcattcatcgaggagaggtggttttatgtca-tttttgatctagaatcacctctctac 26878282  T
Q  371 atctttctcccc--attatttcgatctaaataagtg 404  Q
    |||||| |||||   || |||| |||||||||||||    
T  26878281 atctttttcccccttttctttcaatctaaataagtg 26878246  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 10437429 - 10437382
Alignment:
Q  62 tagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaattt 108  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  10437429 tagtaaaactgtcatgtcttttgacatcattattacatttcttaattt 10437382  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 407
Target Start/End: Complemental strand, 8088475 - 8088377
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattatttcgatctaaataagtgatt 407  Q
    ||||||||||||| || | ||||| |||||| ||||| |||||| |  | |||||  ||||||||||| | | | || |||||||||||||||||||||    
T  8088475 tctttcactcattgagaaggggtgattttagatcattctttgacctgaagtcacctctctgcatcttttttctctttctttcgatctaaataagtgatt 8088377  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 35850623 - 35850667
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatct 368  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||    
T  35850623 aggaggggtggttttaggtc-ttttttgacctagaatcacccatct 35850667  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 39691123 - 39691223
Alignment:
Q  18 cactactttcaaaacattgcactgatagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaa 116  Q
    ||||||||  |||||||| |||  ||||||||||||  | |||| | |||||||| | |||||||||| | |||| |||||||||||||||||||| |||    
T  39691123 cactacttctaaaacattacaccaatagtaaataagactagtttaa-taaaattgccgtgtcttttgatatcattattacatttcttaatttatgtataa 39691221  T
Q  117 aa 118  Q
    ||    
T  39691222 aa 39691223  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 7930027 - 7930083
Alignment:
Q  317 tcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc 373  Q
    |||| ||||| ||||| |||||||||| |||||||| ||||||||||| | ||||||    
T  7930027 tcatcaaggaggggtgattttaggtcaatttttgacctagaatcacccctgtgcatc 7930083  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 13421792 - 13421839
Alignment:
Q  334 ttttaggtcattttttgacttagaatcacccatctgcatctttctcccc 382  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||| |||||    
T  13421792 ttttaggtcattttttgacatagaatcaccc-tctacatctttttcccc 13421839  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 41630297 - 41630325
Alignment:
Q  271 agtgagagaaacttcaacttctctctaag 299  Q
    |||||||||||||||||||||||||||||    
T  41630297 agtgagagaaacttcaacttctctctaag 41630325  T

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Target: scaffold0603 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 404
Target Start/End: Original strand, 7521 - 7637
Alignment:
Q  288 cttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatctttctccccattat 387  Q
    |||||||||||||| || || || || | ||||  |||| || |||||||||||||||||||||| ||||||||| |||||||||||||  |||| || |    
T  7521 cttctctctaagttttctttctcctttattcatcgaggagggatggttttaggtcattttttgacctagaatcactcatctgcatcttttacccctttct 7620  T
Q  388 ttcgatctaaataagtg 404  Q
    ||| || ||||||||||    
T  7621 ttcaatttaaataagtg 7637  T

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Target: scaffold0026 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 72166 - 72055
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||| |||||||||||||||||||||||  | || || || |||  ||||  |||| ||||||||||||||||||||||||| ||||||||||  ||| |    
T  72166 agtgggagaaacttcaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcaccattcttc 72067  T
Q  371 atctttctcccc 382  Q
    |||||| |||||    
T  72066 atctttttcccc 72055  T

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Target: scaffold0445 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 1131 - 1224
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcaccc 364  Q
    |||||| ||||||||||||||||||||| || || || || |||  ||||  ||||  |||||||||||||||||||||||| |||||||||||    
T  1131 agtgagtgaaacttcaacttctctctaaattttctttctccttcgttcatcgaggagaggtggttttaggtcattttttgacctagaatcaccc 1224  T

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Target: scaffold0123 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 28048 - 27972
Alignment:
Q  42 atagtaaataaggtttgttttagtaaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaaaa 118  Q
    ||||||||||||||| |||| ||||||||| ||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  28048 atagtaaataaggttagttt-agtaaaattatcatgtcttttaacatcattattacatttcttaatttatgtataaaa 27972  T

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Target: scaffold0888 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 1976 - 1839
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    |||||||||||||    |||||||||| ||| || |  ||||||||| ||  |||| ||||| | |||||||| |||||||| ||||||||||  |||||    
T  1976 agtgagagaaactctgtcttctctctacgttttcttcctctttcacttatcgaggaggggtgatattaggtcaatttttgacctagaatcacctctctgc 1877  T
Q  371 atc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||| ||| ||||| || |||| ||||||||||||||||    
T  1876 atcttttttcccctttctttcaatctaaataagtgatt 1839  T

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Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 19337 - 19238
Alignment:
Q  271 agtgagagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgc 370  Q
    ||||||||||||| |||||||||||||| || || || ||||||||||||  |||| ||||||||||| |||  |||||||| |||||| |||| |||||    
T  19337 agtgagagaaactccaacttctctctaa-ttttctttctctttcactcatcgaggaggggtggttttatgtc-gtttttgacctagaattacccctctgc 19240  T

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Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 32991 - 32945
Alignment:
Q  330 gtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  32991 gtggttttaggtcattttttgacatagaatcacccctctacatcttt 32945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 92925 - 93024
Alignment:
Q  309 tctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatctgcatc-tttctccccattatttcgatctaaataagtgatt 407  Q
    ||||||| ||||  |||| |||||||||||||| |||||||||| |||||||| ||   |||||| ||| || || || |||| ||||||||||||||||    
T  92925 tctttcattcatataggaggggtggttttaggttattttttgacctagaatcatcctcgtgcatcttttttctcctttctttcaatctaaataagtgatt 93024  T

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Target: scaffold0492 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 12761 - 12795
Alignment:
Q  329 ggtggttttaggtcattttttgacttagaatcacc 363  Q
    |||||||||||||||||||||||| ||||||||||    
T  12761 ggtggttttaggtcattttttgacctagaatcacc 12795  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 25124 - 25215
Alignment:
Q  275 agagaaacttcaacttctctctaagttctcattatctttcactcattaaggaagggtggttttaggtcattttttgacttagaatcacccatct 368  Q
    |||||||||||||||| |||||||  | || || ||||||| ||||   ||| ||||||||||| |||| ||||||||||| |||||| |||||    
T  25124 agagaaacttcaacttttctctaaactttctttctctttcattcatc--ggaggggtggttttaagtcactttttgacttaaaatcactcatct 25215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 25579 - 25526
Alignment:
Q  323 aggaagggtggttttaggtcattttttgacttagaatcacccatctgcatcttt 376  Q
    |||| ||||||||||| ||||||||||||| || |||||||| ||| |||||||    
T  25579 aggaggggtggttttatgtcattttttgacctataatcacccctctacatcttt 25526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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