View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_low_6 (Length: 398)
Name: NF17917_low_6
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 41391009 - 41390627
Alignment:
| Q |
16 |
catgaattaatacaatttcagcgttttgaaagtggttaaaagtccattgaagcaaagtggtggttttgtgaagtgatttaccaacagcaatatgaacttt |
115 |
Q |
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| T |
41391009 |
catgaattaatacaatttcagcgttttgaaagtggttaaaagtccattgaagcaaagtggtggttttgtgaagtgatttaccaacagcaatatgaacttt |
41390910 |
T |
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| Q |
116 |
aaggtttgtaggtgaagattgttgttccatatgttgggtctgagattgagaagaaaagggaaatgggtttgggttcaaaagtttcatggttgttgaagta |
215 |
Q |
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| T |
41390909 |
aaggtttgtaggtgaagattgttgttccatatgttgggtctgagattgagaagaaaagggaaatgggtttgggttcaaaagtttcatggttgttgaagta |
41390810 |
T |
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| Q |
216 |
gatgaagatgaatgattaatggaggaggagg---aggaagtggggtgccaccagtaaaatgaggggtgtagatagaaacaaacattgattgaattgggat |
312 |
Q |
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| T |
41390809 |
gatgaagatgaatgattaatggaggaggaggaggaggaagtggggtgccaccagtaaaatgaggggtgtagatagaaacaaacattgattgaattgggat |
41390710 |
T |
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| Q |
313 |
gatggtgattttttgttgtttgtgttgcaaatgaggaaagtgagagttaattacaggattgactttgttggtcatcaattcat |
395 |
Q |
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| T |
41390709 |
gatggtgattttttgttgtttgtgttgcaaatgaggaaagtgagagttaattacaggattgactttgttggtcatcaattcat |
41390627 |
T |
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