View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17917_low_8 (Length: 385)
Name: NF17917_low_8
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17917_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 22837653 - 22838007
Alignment:
| Q |
15 |
aatgagattaaattaaaaagaaggggtcatttatgcaacaaagtccaccaataattgagttttcaatgctttctaacatgcg-gtgcaaattcagacaac |
113 |
Q |
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| T |
22837653 |
aatgagattaaattaaaaagaaggggtcatttatgcaacaaagttggccaataattgagttttgaatgctttctgacattcgagtgaaaattcagacaac |
22837752 |
T |
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| Q |
114 |
tccacaaatcatttcgccatcctttccgcaagttattatgatctggataacatgtctttaatgggctagttgattggtactgttgtagaatgggccagca |
213 |
Q |
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| T |
22837753 |
tccacataacatttcgccatcctttctgcaagttattatgatccggataacatgtctttaatgggctagtcggttggtactgttatagaatgggccagca |
22837852 |
T |
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| Q |
214 |
agttttcacggaattttccagccacattcattaaggttagagcaatcttttcgatcttctgatatattgtttcggacccttgagtactttgcttacaaag |
313 |
Q |
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| T |
22837853 |
agttttcacggaattt-ccagccacattcattaaggttagagcaatcttttcgatcttctgatatattgtttcggacccttgagtactttgcttacaaag |
22837951 |
T |
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| Q |
314 |
tacatcatgagataaacaaaagattcactaatttctcaaagtacccttattaatat |
369 |
Q |
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| T |
22837952 |
tacatcatgagataaacaaaagcttcactaatttctcaaagtacccttattaatat |
22838007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 106 - 369
Target Start/End: Original strand, 22827292 - 22827554
Alignment:
| Q |
106 |
cagacaactccacaaatcatttcgccatcctttccgcaagttattatgatctggataacatgtctttaatgggctagttgattggtactgttgtagaatg |
205 |
Q |
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| T |
22827292 |
cagacaacaccactgaacatttcgccatgctttccgcaagttaatatgatctgaataacatgtgtttattgggctggtcgatttgtactattatagaatg |
22827391 |
T |
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| Q |
206 |
ggccagcaagttttcacggaattttccagccacattcattaaggttagagcaatcttttcgatcttctgatatattgtttcggacccttgagtactttgc |
305 |
Q |
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| T |
22827392 |
ggccaagaagtattcacggacttt-ccagccacgttcattaaggttagagcaatcttttcgatcttctgatatcttgtttcggacccttgagtactttgc |
22827490 |
T |
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| Q |
306 |
ttacaaagtacatcatgagataaacaaaagattcactaatttctcaaagtacccttattaatat |
369 |
Q |
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| T |
22827491 |
ttacaaagtacatcatgagataaacaaacgtttcactaatttctcaaagaacccttattaatat |
22827554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 102 - 369
Target Start/End: Original strand, 22814987 - 22815250
Alignment:
| Q |
102 |
aattcagacaactccacaaatcatttcgccatcctttccgcaagttattatgatctggataacatgtctttaatgggctagttgattggtactgttgtag |
201 |
Q |
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| T |
22814987 |
aattcaaacatctccacataacatttcgtcatcctttcatcaagttat---gatctaaataacatgtgtttaatggtctggtcggtttgtactattatag |
22815083 |
T |
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| Q |
202 |
aatgggccagcaagttttcacggaattttccagccacattcattaaggttagagcaatcttttcgatcttctgatatattgtttcggacccttgagtact |
301 |
Q |
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| T |
22815084 |
aatgggtcaggaagttttcacg-aacattccagccacgctcattaacgttagagcaatcttttcgatcttctgatattttgttccgggcccttgagtact |
22815182 |
T |
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| Q |
302 |
ttgcttacaaagtacatcatgagataaacaaaagattcactaatttctcaaagtacccttattaatat |
369 |
Q |
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| T |
22815183 |
ttggttacaaagtacatcatgggaaacacaaaagcttcactaatttctcaaagtacccttattaatat |
22815250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 22814935 - 22814985
Alignment:
| Q |
9 |
gaagaaaatgagattaaattaaaaagaaggggtcatttatgcaacaaagtc |
59 |
Q |
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| T |
22814935 |
gaagacaatgatattaaattaaaaagaaggggtcatttatgctacaaagtc |
22814985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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