View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17917_low_9 (Length: 373)

Name: NF17917_low_9
Description: NF17917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17917_low_9
NF17917_low_9
[»] chr3 (39 HSPs)
chr3 (36-363)||(10777890-10778217)
chr3 (1-36)||(4833204-4833239)
chr3 (1-36)||(6583330-6583365)
chr3 (1-35)||(2687558-2687592)
chr3 (1-35)||(3917765-3917799)
chr3 (1-35)||(4232272-4232306)
chr3 (1-35)||(8381078-8381112)
chr3 (1-35)||(13525168-13525202)
chr3 (1-35)||(21402753-21402787)
chr3 (1-35)||(24910383-24910417)
chr3 (1-35)||(30553063-30553097)
chr3 (1-35)||(32961073-32961107)
chr3 (1-35)||(41464663-41464697)
chr3 (1-35)||(44037539-44037573)
chr3 (3-35)||(4976805-4976837)
chr3 (1-36)||(27002835-27002870)
chr3 (1-36)||(27396852-27396887)
chr3 (4-35)||(43605674-43605705)
chr3 (1-31)||(1242220-1242250)
chr3 (1-35)||(2789073-2789107)
chr3 (1-35)||(2900254-2900288)
chr3 (1-35)||(6083236-6083270)
chr3 (1-31)||(11312593-11312623)
chr3 (1-35)||(22371449-22371483)
chr3 (1-35)||(24250724-24250758)
chr3 (1-35)||(24650642-24650676)
chr3 (1-35)||(24751752-24751786)
chr3 (1-35)||(28266525-28266559)
chr3 (1-35)||(29212160-29212194)
chr3 (1-35)||(34397679-34397713)
chr3 (5-35)||(38127941-38127971)
chr3 (1-35)||(46838822-46838856)
chr3 (1-35)||(47408839-47408873)
chr3 (5-35)||(47410851-47410881)
chr3 (5-35)||(53583960-53583990)
chr3 (1-35)||(54097535-54097569)
chr3 (7-36)||(11029661-11029690)
chr3 (3-35)||(15003627-15003659)
chr3 (7-35)||(28171081-28171109)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-37)||(9364-9400)
[»] chr8 (40 HSPs)
chr8 (1-37)||(8547225-8547261)
chr8 (1-35)||(2733615-2733649)
chr8 (1-35)||(4312132-4312166)
chr8 (1-35)||(4430830-4430864)
chr8 (1-35)||(4977129-4977163)
chr8 (1-35)||(6317299-6317333)
chr8 (1-35)||(27928157-27928191)
chr8 (1-35)||(34711650-34711684)
chr8 (1-35)||(36586481-36586515)
chr8 (1-35)||(38070576-38070610)
chr8 (3-36)||(24654972-24655005)
chr8 (5-37)||(10286564-10286596)
chr8 (3-35)||(25250784-25250816)
chr8 (1-36)||(11100383-11100418)
chr8 (1-32)||(25213631-25213662)
chr8 (1-32)||(26690696-26690727)
chr8 (1-32)||(37295128-37295159)
chr8 (1-36)||(43820866-43820901)
chr8 (1-35)||(3054023-3054057)
chr8 (1-35)||(7772145-7772179)
chr8 (1-35)||(13634845-13634879)
chr8 (1-35)||(13735258-13735292)
chr8 (5-35)||(14188089-14188119)
chr8 (1-35)||(19649593-19649627)
chr8 (1-35)||(20990508-20990542)
chr8 (1-35)||(25199045-25199079)
chr8 (1-35)||(26737970-26738004)
chr8 (1-35)||(33067483-33067517)
chr8 (1-35)||(34744361-34744395)
chr8 (1-35)||(37708542-37708576)
chr8 (1-35)||(38953575-38953609)
chr8 (5-35)||(40744341-40744371)
chr8 (1-31)||(44814866-44814896)
chr8 (5-38)||(35421717-35421750)
chr8 (1-33)||(6845078-6845110)
chr8 (1-29)||(7432590-7432618)
chr8 (7-35)||(8569944-8569972)
chr8 (3-35)||(15129636-15129668)
chr8 (3-35)||(23872808-23872840)
chr8 (4-32)||(25893853-25893881)
[»] chr7 (31 HSPs)
chr7 (1-36)||(40809043-40809078)
chr7 (1-35)||(1323682-1323716)
chr7 (1-35)||(2354892-2354926)
chr7 (1-35)||(3497612-3497646)
chr7 (1-35)||(4887608-4887642)
chr7 (1-35)||(19306711-19306745)
chr7 (1-35)||(35157179-35157213)
chr7 (1-35)||(45236929-45236963)
chr7 (1-35)||(48612516-48612550)
chr7 (1-35)||(48729779-48729813)
chr7 (1-34)||(27396409-27396442)
chr7 (3-35)||(6596541-6596573)
chr7 (1-32)||(4674404-4674435)
chr7 (4-35)||(29151582-29151613)
chr7 (1-35)||(1573936-1573970)
chr7 (1-35)||(4106553-4106587)
chr7 (5-35)||(9379990-9380020)
chr7 (1-35)||(10061111-10061145)
chr7 (1-35)||(18944923-18944957)
chr7 (1-35)||(31300092-31300126)
chr7 (1-35)||(31717296-31717330)
chr7 (1-35)||(32251430-32251464)
chr7 (1-35)||(35849294-35849328)
chr7 (1-31)||(36280020-36280050)
chr7 (1-35)||(45041828-45041862)
chr7 (1-35)||(46416548-46416582)
chr7 (5-35)||(47584770-47584800)
chr7 (3-32)||(7312550-7312579)
chr7 (7-35)||(33228698-33228726)
chr7 (1-29)||(33512802-33512830)
chr7 (3-35)||(47182802-47182834)
[»] chr6 (21 HSPs)
chr6 (1-36)||(4083585-4083620)
chr6 (1-35)||(2314694-2314728)
chr6 (1-35)||(8448237-8448271)
chr6 (1-35)||(8457041-8457075)
chr6 (1-35)||(8939625-8939659)
chr6 (1-35)||(10181044-10181078)
chr6 (1-35)||(17534618-17534652)
chr6 (1-35)||(31205278-31205312)
chr6 (1-32)||(1241597-1241628)
chr6 (1-32)||(18861862-18861893)
chr6 (1-36)||(26269243-26269278)
chr6 (1-32)||(32107930-32107961)
chr6 (1-35)||(735444-735478)
chr6 (1-35)||(4480473-4480507)
chr6 (1-35)||(10263166-10263200)
chr6 (1-35)||(13507405-13507439)
chr6 (1-35)||(13540256-13540290)
chr6 (1-35)||(15953233-15953267)
chr6 (1-37)||(5603542-5603578)
chr6 (7-35)||(16496754-16496782)
chr6 (3-39)||(27866583-27866619)
[»] scaffold0402 (1 HSPs)
scaffold0402 (1-35)||(1336-1370)
[»] scaffold0287 (1 HSPs)
scaffold0287 (1-35)||(1153-1187)
[»] scaffold0179 (1 HSPs)
scaffold0179 (1-35)||(4110-4144)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-35)||(90568-90602)
[»] chr5 (36 HSPs)
chr5 (1-35)||(1244276-1244310)
chr5 (1-35)||(2103025-2103059)
chr5 (1-35)||(4164958-4164992)
chr5 (1-35)||(6672240-6672274)
chr5 (1-35)||(12707971-12708005)
chr5 (1-35)||(12878213-12878247)
chr5 (1-35)||(17869219-17869253)
chr5 (1-35)||(18473913-18473947)
chr5 (1-35)||(23311268-23311302)
chr5 (1-35)||(28143327-28143361)
chr5 (1-35)||(36569278-36569312)
chr5 (1-35)||(36726988-36727022)
chr5 (1-35)||(41562457-41562491)
chr5 (5-36)||(6029610-6029641)
chr5 (1-36)||(9054066-9054101)
chr5 (1-36)||(9640629-9640664)
chr5 (1-32)||(9902596-9902627)
chr5 (1-32)||(29119608-29119639)
chr5 (1-35)||(671154-671188)
chr5 (1-35)||(22620746-22620780)
chr5 (1-35)||(24443962-24443996)
chr5 (1-31)||(25328399-25328429)
chr5 (1-35)||(26267096-26267130)
chr5 (1-35)||(33617095-33617129)
chr5 (1-35)||(34675746-34675780)
chr5 (1-35)||(36136957-36136991)
chr5 (3-33)||(38682929-38682959)
chr5 (1-35)||(42068540-42068574)
chr5 (1-35)||(42337938-42337972)
chr5 (5-35)||(42448210-42448240)
chr5 (6-35)||(23310399-23310428)
chr5 (3-35)||(18625712-18625744)
chr5 (7-35)||(21728659-21728687)
chr5 (7-35)||(23074746-23074774)
chr5 (4-36)||(24051401-24051433)
chr5 (1-29)||(40595962-40595990)
[»] chr4 (34 HSPs)
chr4 (1-35)||(1982560-1982594)
chr4 (1-35)||(3084337-3084371)
chr4 (1-35)||(3848913-3848947)
chr4 (1-35)||(5397035-5397069)
chr4 (1-35)||(9569474-9569508)
chr4 (1-35)||(12821164-12821198)
chr4 (1-35)||(23974737-23974771)
chr4 (1-35)||(24712087-24712121)
chr4 (1-35)||(30044679-30044713)
chr4 (1-35)||(42154233-42154267)
chr4 (1-35)||(42856562-42856596)
chr4 (1-35)||(46488212-46488246)
chr4 (1-35)||(49535884-49535918)
chr4 (1-35)||(49882804-49882838)
chr4 (3-35)||(7512766-7512798)
chr4 (3-35)||(28010148-28010180)
chr4 (4-35)||(13389019-13389050)
chr4 (1-36)||(35318538-35318573)
chr4 (1-32)||(35828276-35828307)
chr4 (1-31)||(1033544-1033574)
chr4 (1-35)||(1083507-1083541)
chr4 (1-35)||(24550812-24550846)
chr4 (1-35)||(29428054-29428088)
chr4 (1-35)||(29648763-29648797)
chr4 (5-35)||(29894409-29894439)
chr4 (5-35)||(31263600-31263630)
chr4 (1-31)||(47462131-47462161)
chr4 (1-31)||(54907987-54908017)
chr4 (1-30)||(37166142-37166171)
chr4 (1-34)||(42412083-42412116)
chr4 (3-36)||(44171647-44171680)
chr4 (7-35)||(13632088-13632116)
chr4 (3-35)||(14285094-14285126)
chr4 (7-35)||(55853416-55853444)
[»] chr2 (27 HSPs)
chr2 (1-35)||(2287404-2287438)
chr2 (1-35)||(13268070-13268104)
chr2 (1-35)||(15897213-15897247)
chr2 (1-35)||(20251580-20251614)
chr2 (1-35)||(23080193-23080227)
chr2 (1-35)||(32023251-32023285)
chr2 (1-35)||(33607042-33607076)
chr2 (1-35)||(34667043-34667077)
chr2 (1-35)||(36754836-36754870)
chr2 (1-35)||(38490495-38490529)
chr2 (1-35)||(40592312-40592346)
chr2 (1-35)||(42160352-42160386)
chr2 (3-35)||(42200959-42200991)
chr2 (1-36)||(6731540-6731575)
chr2 (1-36)||(7958079-7958114)
chr2 (1-36)||(10392643-10392678)
chr2 (1-32)||(34481766-34481797)
chr2 (1-35)||(727384-727418)
chr2 (1-35)||(7975109-7975143)
chr2 (1-35)||(12236120-12236154)
chr2 (1-31)||(18368797-18368827)
chr2 (1-35)||(18999328-18999362)
chr2 (5-35)||(35476589-35476619)
chr2 (5-35)||(35706851-35706881)
chr2 (1-34)||(39070019-39070052)
chr2 (3-35)||(28855511-28855543)
chr2 (4-36)||(32120608-32120640)
[»] chr1 (27 HSPs)
chr1 (1-35)||(10635488-10635522)
chr1 (1-35)||(19338273-19338307)
chr1 (1-35)||(28999373-28999407)
chr1 (1-35)||(29005089-29005123)
chr1 (1-35)||(40809308-40809342)
chr1 (1-35)||(40958669-40958703)
chr1 (1-35)||(42631080-42631114)
chr1 (1-35)||(43676119-43676153)
chr1 (1-35)||(48314166-48314200)
chr1 (1-35)||(48391955-48391989)
chr1 (3-36)||(14890285-14890318)
chr1 (1-32)||(3315796-3315827)
chr1 (1-32)||(24119658-24119689)
chr1 (4-35)||(25083217-25083248)
chr1 (1-32)||(41445125-41445156)
chr1 (5-36)||(49948239-49948270)
chr1 (1-35)||(5598300-5598334)
chr1 (1-31)||(13555819-13555849)
chr1 (1-35)||(15906262-15906296)
chr1 (1-35)||(17068151-17068185)
chr1 (1-35)||(18475108-18475142)
chr1 (1-35)||(19279947-19279981)
chr1 (1-35)||(35010684-35010718)
chr1 (5-35)||(40685528-40685558)
chr1 (1-35)||(43086566-43086600)
chr1 (1-35)||(49500860-49500894)
chr1 (7-36)||(270423-270452)
[»] scaffold0457 (1 HSPs)
scaffold0457 (1-31)||(6782-6812)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-35)||(8954-8988)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-35)||(39408-39442)
[»] scaffold0244 (1 HSPs)
scaffold0244 (1-37)||(7852-7888)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 36 - 363
Target Start/End: Complemental strand, 10778217 - 10777890
Alignment:
Q  36 ggttcgattgtccttattgattctattacggatgctaccattttcgttggttttatgcgtcaagttattgagccaagttttgtgccaaacatcacgttgg 135  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10778217 ggttcgatcgtccttattgattctcttacggatgctaccattttcgttagttttgtgcgtcaagttattgagccaagttttgtgccaaacatcacgttgg 10778118  T
Q  136 tgtggaatcagttataagaaggaacgaacttggttgatttaattggatttttgtccattgtttggtcgacatatttgaatatagcattggtttgtaatta 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10778117 tgtggaatcagttataagaaggaacgaacttggttgatttaattggatttttgtccattgtttggtcgacatatttgaatatagcattggtttgtaatta 10778018  T
Q  236 ttggtcactttattaacattnnnnnnntactaaggtgtttttctttgtaattatttggtcttggttttgcataagttgcctcttaatttatgagttttgg 335  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10778017 ttggtcactttattaacattaaaaaaatactaaggtgtttttctttgtaattatttggtcttggttttgcataagttacctcttaatttatgagttttgg 10777918  T
Q  336 ttcgtttagattggtttggtatgatgat 363  Q
    ||||||||||||||||||||||| ||||    
T  10777917 ttcgtttagattggtttggtatgttgat 10777890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4833204 - 4833239
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  4833204 tcggcattttgccagttgagctaggacttctggatg 4833239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6583330 - 6583365
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  6583330 tcggcattttgccagttgagctaggacttctggatg 6583365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2687592 - 2687558
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2687592 tcggcattttgccagttgagctaggacttctggat 2687558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3917799 - 3917765
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3917799 tcggcattttgccagttgagctaggacttctggat 3917765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4232272 - 4232306
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4232272 tcggcattttgccagttgagctaggacttctggat 4232306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8381112 - 8381078
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8381112 tcggcattttgccagttgagctaggacttctggat 8381078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13525202 - 13525168
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13525202 tcggcattttgccagttgagctaggacttctggat 13525168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21402753 - 21402787
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21402753 tcggcattttgccagttgagctaggacttctggat 21402787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24910383 - 24910417
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  24910383 tcggcattttgccagttgagctaggacttctggat 24910417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30553063 - 30553097
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30553063 tcggcattttgccagttgagctaggacttctggat 30553097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32961073 - 32961107
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32961073 tcggcattttgccagttgagctaggacttctggat 32961107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41464697 - 41464663
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  41464697 tcggcattttgccagttgagctaggacttctggat 41464663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44037539 - 44037573
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  44037539 tcggcattttgccagttgagctaggacttctggat 44037573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 4976805 - 4976837
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||    
T  4976805 ggcattttgccagttgagctaggacttctggat 4976837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27002835 - 27002870
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  27002835 tcggcactttgccagttgagctaggacttctggatg 27002870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27396887 - 27396852
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  27396887 tcggcattttgtcagttgagctaggacttctggatg 27396852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 43605674 - 43605705
Alignment:
Q  4 gcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||||||    
T  43605674 gcattttgccagttgagctaggacttctggat 43605705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1242250 - 1242220
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  1242250 tcggcattttgccagttgagctaggacttct 1242220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2789073 - 2789107
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  2789073 tcggcattttgccagttgaactaggacttctggat 2789107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2900288 - 2900254
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  2900288 tcggcattttgccagtggagctaggacttctggat 2900254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6083236 - 6083270
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  6083236 tcggcattttgctagttgagctaggacttctggat 6083270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 11312623 - 11312593
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  11312623 tcggcattttgccagttgagctaggacttct 11312593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22371483 - 22371449
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  22371483 tcggcattttgccagttgaggtaggacttctggat 22371449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24250758 - 24250724
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  24250758 tcggcattttgccaattgagctaggacttctggat 24250724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24650642 - 24650676
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  24650642 tcggcattttgccagttgaggtaggacttctggat 24650676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24751786 - 24751752
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  24751786 tcggcattttgccagttgagctaggacttgtggat 24751752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28266559 - 28266525
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  28266559 tcggcattttgtcagttgagctaggacttctggat 28266525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29212160 - 29212194
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  29212160 tcggcattttgccagttgagctaggacttatggat 29212194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34397713 - 34397679
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  34397713 tcggcattttgccagttgaactaggacttctggat 34397679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 38127941 - 38127971
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  38127941 cattttgccagttgagctaggacttctggat 38127971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46838822 - 46838856
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  46838822 tcggcatttttccagttgagctaggacttctggat 46838856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47408873 - 47408839
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  47408873 tcggcattttgctagttgagctaggacttctggat 47408839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 47410851 - 47410881
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  47410851 cattttgccagttgagctaggacttctggat 47410881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 53583990 - 53583960
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  53583990 cattttgccagttgagctaggacttctggat 53583960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 54097535 - 54097569
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  54097535 tcggcattttgccatttgagctaggacttctggat 54097569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 11029690 - 11029661
Alignment:
Q  7 ttttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||    
T  11029690 ttttgccagttgagctaggacttctggatg 11029661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 15003659 - 15003627
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||| |||||||||||||||    
T  15003659 ggcattttgccagttgaactaggacttctggat 15003627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 28171081 - 28171109
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  28171081 ttttgccagttgagctaggacttctggat 28171109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9400 - 9364
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatgg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  9400 tcggcattttgccagttgagctaggacttctggatgg 9364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8547225 - 8547261
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatgg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  8547225 tcggcattttgccagttgagctaggacttctggatgg 8547261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2733649 - 2733615
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2733649 tcggcattttgccagttgagctaggacttctggat 2733615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4312166 - 4312132
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4312166 tcggcattttgccagttgagctaggacttctggat 4312132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4430830 - 4430864
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4430830 tcggcattttgccagttgagctaggacttctggat 4430864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4977129 - 4977163
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4977129 tcggcattttgccagttgagctaggacttctggat 4977163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6317333 - 6317299
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6317333 tcggcattttgccagttgagctaggacttctggat 6317299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27928191 - 27928157
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27928191 tcggcattttgccagttgagctaggacttctggat 27928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34711650 - 34711684
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  34711650 tcggcattttgccagttgagctaggacttctggat 34711684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36586515 - 36586481
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36586515 tcggcattttgccagttgagctaggacttctggat 36586481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38070576 - 38070610
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38070576 tcggcattttgccagttgagctaggacttctggat 38070610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 24655005 - 24654972
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||||    
T  24655005 ggcattttgccagttgagctaggacttctggatg 24654972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 10286564 - 10286596
Alignment:
Q  5 cattttgccagttgagctaggacttctggatgg 37  Q
    |||||||||||||||||||||||||||||||||    
T  10286564 cattttgccagttgagctaggacttctggatgg 10286596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 25250816 - 25250784
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||    
T  25250816 ggcattttgccagttgagctaggacttctggat 25250784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11100383 - 11100418
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  11100383 tcggcatttttccagttgagctaggacttctggatg 11100418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 25213662 - 25213631
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  25213662 tcggcattttgccagttgagctaggacttctg 25213631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26690727 - 26690696
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  26690727 tcggcattttgccagttgagctaggacttctg 26690696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 37295159 - 37295128
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  37295159 tcggcattttgccagttgagctaggacttctg 37295128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43820901 - 43820866
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  43820901 tcggcattttgccagttgagttaggacttctggatg 43820866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3054057 - 3054023
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  3054057 tcggcattttgccagttgagctagaacttctggat 3054023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7772145 - 7772179
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  7772145 tcggcattttaccagttgagctaggacttctggat 7772179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13634879 - 13634845
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13634879 tcggcattttgccagttgagctaagacttctggat 13634845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13735292 - 13735258
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13735292 tcggcattttgccagttgagctaagacttctggat 13735258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 14188119 - 14188089
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  14188119 cattttgccagttgagctaggacttctggat 14188089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19649593 - 19649627
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  19649593 tcggcattttgccagttgagctatgacttctggat 19649627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20990508 - 20990542
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  20990508 tcggcattttgccagttgagctagaacttctggat 20990542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25199079 - 25199045
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  25199079 tcggcattttaccagttgagctaggacttctggat 25199045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26738004 - 26737970
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  26738004 tcggcattttaccagttgagctaggacttctggat 26737970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33067483 - 33067517
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  33067483 tcggcattttgccagttgagctaggacttccggat 33067517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34744361 - 34744395
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  34744361 tcggcattttgccagttgagctatgacttctggat 34744395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37708542 - 37708576
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  37708542 tcggcattttgccagttgagctaggacttatggat 37708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38953575 - 38953609
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38953575 tcggcattttgccagttgagctaagacttctggat 38953609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 40744341 - 40744371
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  40744341 cattttgccagttgagctaggacttctggat 40744371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 44814896 - 44814866
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  44814896 tcggcattttgccagttgagctaggacttct 44814866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 35421717 - 35421750
Alignment:
Q  5 cattttgccagttgagctaggacttctggatggt 38  Q
    ||||||||||||||| ||||||||||||||||||    
T  35421717 cattttgccagttgaactaggacttctggatggt 35421750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6845078 - 6845110
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctgg 33  Q
    |||||||||||||| ||||||||||||||||||    
T  6845078 tcggcattttgccaattgagctaggacttctgg 6845110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7432590 - 7432618
Alignment:
Q  1 tcggcattttgccagttgagctaggactt 29  Q
    |||||||||||||||||||||||||||||    
T  7432590 tcggcattttgccagttgagctaggactt 7432618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 8569972 - 8569944
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  8569972 ttttgccagttgagctaggacttctggat 8569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 15129668 - 15129636
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||| |||||||||||||||||||||    
T  15129668 ggcattttgccggttgagctaggacttctggat 15129636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 23872808 - 23872840
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||| ||||||||||||||    
T  23872808 ggcattttgccagttgagttaggacttctggat 23872840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 25893881 - 25893853
Alignment:
Q  4 gcattttgccagttgagctaggacttctg 32  Q
    |||||||||||||||||||||||||||||    
T  25893881 gcattttgccagttgagctaggacttctg 25893853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40809078 - 40809043
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  40809078 tcggcattttgccagttgagctaggacttctggatg 40809043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1323716 - 1323682
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1323716 tcggcattttgccagttgagctaggacttctggat 1323682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2354892 - 2354926
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2354892 tcggcattttgccagttgagctaggacttctggat 2354926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3497612 - 3497646
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3497612 tcggcattttgccagttgagctaggacttctggat 3497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4887608 - 4887642
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4887608 tcggcattttgccagttgagctaggacttctggat 4887642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19306745 - 19306711
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19306745 tcggcattttgccagttgagctaggacttctggat 19306711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35157179 - 35157213
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35157179 tcggcattttgccagttgagctaggacttctggat 35157213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45236963 - 45236929
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  45236963 tcggcattttgccagttgagctaggacttctggat 45236929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48612550 - 48612516
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48612550 tcggcattttgccagttgagctaggacttctggat 48612516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48729779 - 48729813
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48729779 tcggcattttgccagttgagctaggacttctggat 48729813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27396409 - 27396442
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctgga 34  Q
    ||||||||||||||||||||||||||||||||||    
T  27396409 tcggcattttgccagttgagctaggacttctgga 27396442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 6596573 - 6596541
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||    
T  6596573 ggcattttgccagttgagctaggacttctggat 6596541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4674404 - 4674435
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  4674404 tcggcattttgccagttgagctaggacttctg 4674435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 29151613 - 29151582
Alignment:
Q  4 gcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||||||    
T  29151613 gcattttgccagttgagctaggacttctggat 29151582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1573936 - 1573970
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  1573936 tcggcattttaccagttgagctaggacttctggat 1573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4106587 - 4106553
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  4106587 tcggcattttaccagttgagctaggacttctggat 4106553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 9380020 - 9379990
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  9380020 cattttgccagttgagctaggacttctggat 9379990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10061111 - 10061145
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  10061111 tcggcattttgccagttgagctaggacttgtggat 10061145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18944957 - 18944923
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  18944957 tcggcattttgccagttgaactaggacttctggat 18944923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31300092 - 31300126
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  31300092 tcggcattttgccagtttagctaggacttctggat 31300126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31717330 - 31717296
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  31717330 tcggcattttaccagttgagctaggacttctggat 31717296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32251430 - 32251464
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  32251430 tcggcattttgccagttgaactaggacttctggat 32251464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35849328 - 35849294
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  35849328 tcggcactttgccagttgagctaggacttctggat 35849294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36280020 - 36280050
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  36280020 tcggcattttgccagttgagctaggacttct 36280050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 45041828 - 45041862
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  45041828 tcggcattttgccagttgagctaagacttctggat 45041862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46416582 - 46416548
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  46416582 tcggcattttgccagttgacctaggacttctggat 46416548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 47584770 - 47584800
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  47584770 cattttgccagttgagctaggacttctggat 47584800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 7312550 - 7312579
Alignment:
Q  3 ggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||    
T  7312550 ggcattttgccagttgagctaggacttctg 7312579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 33228726 - 33228698
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  33228726 ttttgccagttgagctaggacttctggat 33228698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33512830 - 33512802
Alignment:
Q  1 tcggcattttgccagttgagctaggactt 29  Q
    |||||||||||||||||||||||||||||    
T  33512830 tcggcattttgccagttgagctaggactt 33512802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 47182834 - 47182802
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||| |||||    
T  47182834 ggcattttgccagttgagctaggacttatggat 47182802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4083620 - 4083585
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  4083620 tcggcattttgccagttgagctaggacttctggatg 4083585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2314694 - 2314728
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2314694 tcggcattttgccagttgagctaggacttctggat 2314728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8448237 - 8448271
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8448237 tcggcattttgccagttgagctaggacttctggat 8448271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8457041 - 8457075
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8457041 tcggcattttgccagttgagctaggacttctggat 8457075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8939659 - 8939625
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8939659 tcggcattttgccagttgagctaggacttctggat 8939625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10181078 - 10181044
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10181078 tcggcattttgccagttgagctaggacttctggat 10181044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17534618 - 17534652
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17534618 tcggcattttgccagttgagctaggacttctggat 17534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31205278 - 31205312
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31205278 tcggcattttgccagttgagctaggacttctggat 31205312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 1241628 - 1241597
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  1241628 tcggcattttgccagttgagctaggacttctg 1241597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 18861862 - 18861893
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  18861862 tcggcattttgccagttgagctaggacttctg 18861893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26269278 - 26269243
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26269278 tcggcattttgccagttgagctaggacttctagatg 26269243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 32107930 - 32107961
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  32107930 tcggcattttgccagttgagctaggacttctg 32107961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 735478 - 735444
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  735478 tcggcattttgccagttgagctagaacttctggat 735444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4480507 - 4480473
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  4480507 tcggcattttgccagttgagttaggacttctggat 4480473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10263166 - 10263200
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  10263166 tcggcactttgccagttgagctaggacttctggat 10263200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13507405 - 13507439
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  13507405 tcggcattttcccagttgagctaggacttctggat 13507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13540256 - 13540290
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  13540256 tcggcattttgccatttgagctaggacttctggat 13540290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15953267 - 15953233
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  15953267 tcggcattttaccagttgagctaggacttctggat 15953233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5603542 - 5603578
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatgg 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  5603542 tcggcatttttccagttgagctagaacttctggatgg 5603578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 16496754 - 16496782
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  16496754 ttttgccagttgagctaggacttctggat 16496782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 27866619 - 27866583
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggatggtt 39  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  27866619 ggcattttgccaattgagctgggacttctggatggtt 27866583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1336 - 1370
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1336 tcggcattttgccagttgagctaggacttctggat 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1153 - 1187
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1153 tcggcattttgccagttgagctaggacttctggat 1187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4110 - 4144
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4110 tcggcattttgccagttgagctaggacttctggat 4144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 90602 - 90568
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  90602 tcggcattttgccagttgagctaggacttctggat 90568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1244276 - 1244310
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1244276 tcggcattttgccagttgagctaggacttctggat 1244310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2103059 - 2103025
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2103059 tcggcattttgccagttgagctaggacttctggat 2103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4164992 - 4164958
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4164992 tcggcattttgccagttgagctaggacttctggat 4164958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6672274 - 6672240
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6672274 tcggcattttgccagttgagctaggacttctggat 6672240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12707971 - 12708005
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12707971 tcggcattttgccagttgagctaggacttctggat 12708005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12878213 - 12878247
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12878213 tcggcattttgccagttgagctaggacttctggat 12878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17869219 - 17869253
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17869219 tcggcattttgccagttgagctaggacttctggat 17869253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18473947 - 18473913
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18473947 tcggcattttgccagttgagctaggacttctggat 18473913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23311268 - 23311302
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23311268 tcggcattttgccagttgagctaggacttctggat 23311302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28143327 - 28143361
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28143327 tcggcattttgccagttgagctaggacttctggat 28143361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36569312 - 36569278
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36569312 tcggcattttgccagttgagctaggacttctggat 36569278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36727022 - 36726988
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36727022 tcggcattttgccagttgagctaggacttctggat 36726988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41562491 - 41562457
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  41562491 tcggcattttgccagttgagctaggacttctggat 41562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 6029641 - 6029610
Alignment:
Q  5 cattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||    
T  6029641 cattttgccagttgagctaggacttctggatg 6029610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9054066 - 9054101
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  9054066 tcggtattttgccagttgagctaggacttctggatg 9054101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9640629 - 9640664
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9640629 tcggcattttgccagttgagctatgacttctggatg 9640664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9902596 - 9902627
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  9902596 tcggcattttgccagttgagctaggacttctg 9902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 29119639 - 29119608
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  29119639 tcggcattttgccagttgagctaggacttctg 29119608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 671154 - 671188
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  671154 tcggcattttgccagttgaactaggacttctggat 671188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22620746 - 22620780
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  22620746 tcggcattttgtcagttgagctaggacttctggat 22620780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24443962 - 24443996
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  24443962 tcggtattttgccagttgagctaggacttctggat 24443996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 25328399 - 25328429
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  25328399 tcggcattttgccagttgagctaggacttct 25328429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26267096 - 26267130
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  26267096 tcggcattttgccagttgagctacgacttctggat 26267130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33617129 - 33617095
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  33617129 tcggcattttaccagttgagctaggacttctggat 33617095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34675780 - 34675746
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  34675780 tcggcattttgcctgttgagctaggacttctggat 34675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36136957 - 36136991
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  36136957 tcggcattttgctagttgagctaggacttctggat 36136991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 38682959 - 38682929
Alignment:
Q  3 ggcattttgccagttgagctaggacttctgg 33  Q
    |||||||||||||||||||||||||||||||    
T  38682959 ggcattttgccagttgagctaggacttctgg 38682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42068574 - 42068540
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  42068574 tcggcattttgccagctgagctaggacttctggat 42068540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42337938 - 42337972
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  42337938 tcggcattttgccagttgagctaggaattctggat 42337972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 42448240 - 42448210
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  42448240 cattttgccagttgagctaggacttctggat 42448210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 23310428 - 23310399
Alignment:
Q  6 attttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||||    
T  23310428 attttgccagttgagctaggacttctggat 23310399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 18625712 - 18625744
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||| ||||||||||||||    
T  18625712 ggcattttgccagttgagttaggacttctggat 18625744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 21728687 - 21728659
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  21728687 ttttgccagttgagctaggacttctggat 21728659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 23074746 - 23074774
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  23074746 ttttgccagttgagctaggacttctggat 23074774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 24051433 - 24051401
Alignment:
Q  4 gcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||| |||||||||||||||    
T  24051433 gcattttgccagttgagttaggacttctggatg 24051401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40595990 - 40595962
Alignment:
Q  1 tcggcattttgccagttgagctaggactt 29  Q
    |||||||||||||||||||||||||||||    
T  40595990 tcggcattttgccagttgagctaggactt 40595962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1982594 - 1982560
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1982594 tcggcattttgccagttgagctaggacttctggat 1982560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3084337 - 3084371
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3084337 tcggcattttgccagttgagctaggacttctggat 3084371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3848913 - 3848947
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3848913 tcggcattttgccagttgagctaggacttctggat 3848947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5397035 - 5397069
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5397035 tcggcattttgccagttgagctaggacttctggat 5397069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9569508 - 9569474
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9569508 tcggcattttgccagttgagctaggacttctggat 9569474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12821198 - 12821164
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12821198 tcggcattttgccagttgagctaggacttctggat 12821164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23974737 - 23974771
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23974737 tcggcattttgccagttgagctaggacttctggat 23974771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24712121 - 24712087
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  24712121 tcggcattttgccagttgagctaggacttctggat 24712087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30044679 - 30044713
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30044679 tcggcattttgccagttgagctaggacttctggat 30044713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42154233 - 42154267
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42154233 tcggcattttgccagttgagctaggacttctggat 42154267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42856596 - 42856562
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42856596 tcggcattttgccagttgagctaggacttctggat 42856562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46488212 - 46488246
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  46488212 tcggcattttgccagttgagctaggacttctggat 46488246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49535918 - 49535884
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  49535918 tcggcattttgccagttgagctaggacttctggat 49535884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49882804 - 49882838
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  49882804 tcggcattttgccagttgagctaggacttctggat 49882838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 7512798 - 7512766
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||    
T  7512798 ggcattttgccagttgagctaggacttctggat 7512766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 28010148 - 28010180
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||    
T  28010148 ggcattttgccagttgagctaggacttctggat 28010180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 13389050 - 13389019
Alignment:
Q  4 gcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||||||    
T  13389050 gcattttgccagttgagctaggacttctggat 13389019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35318573 - 35318538
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  35318573 tcggcattttgccagttgagttaggacttctggatg 35318538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 35828307 - 35828276
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  35828307 tcggcattttgccagttgagctaggacttctg 35828276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1033544 - 1033574
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  1033544 tcggcattttgccagttgagctaggacttct 1033574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1083541 - 1083507
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  1083541 tcggcattttgccagttgaactaggacttctggat 1083507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24550846 - 24550812
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  24550846 tcggcattttgccagttgagctaagacttctggat 24550812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29428088 - 29428054
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  29428088 tcggtattttgccagttgagctaggacttctggat 29428054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29648797 - 29648763
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  29648797 tcggcattttgctagttgagctaggacttctggat 29648763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 29894439 - 29894409
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  29894439 cattttgccagttgagctaggacttctggat 29894409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 31263600 - 31263630
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  31263600 cattttgccagttgagctaggacttctggat 31263630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 47462131 - 47462161
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  47462131 tcggcattttgccagttgagctaggacttct 47462161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 54907987 - 54908017
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  54907987 tcggcattttgccagttgagctaggacttct 54908017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37166171 - 37166142
Alignment:
Q  1 tcggcattttgccagttgagctaggacttc 30  Q
    ||||||||||||||||||||||||||||||    
T  37166171 tcggcattttgccagttgagctaggacttc 37166142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42412083 - 42412116
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctgga 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  42412083 tcggcattttgccagttgagctatgacttctgga 42412116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 44171680 - 44171647
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggatg 36  Q
    |||||||||| |||||||||||||||||||||||    
T  44171680 ggcattttgctagttgagctaggacttctggatg 44171647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 13632116 - 13632088
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  13632116 ttttgccagttgagctaggacttctggat 13632088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 14285126 - 14285094
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||| |||||||||||||||||||||||    
T  14285126 ggcattttgtcagttgagctaggacttctggat 14285094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 55853416 - 55853444
Alignment:
Q  7 ttttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||    
T  55853416 ttttgccagttgagctaggacttctggat 55853444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2287404 - 2287438
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2287404 tcggcattttgccagttgagctaggacttctggat 2287438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13268070 - 13268104
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13268070 tcggcattttgccagttgagctaggacttctggat 13268104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15897247 - 15897213
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15897247 tcggcattttgccagttgagctaggacttctggat 15897213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20251580 - 20251614
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  20251580 tcggcattttgccagttgagctaggacttctggat 20251614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23080193 - 23080227
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23080193 tcggcattttgccagttgagctaggacttctggat 23080227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32023285 - 32023251
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32023285 tcggcattttgccagttgagctaggacttctggat 32023251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33607076 - 33607042
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  33607076 tcggcattttgccagttgagctaggacttctggat 33607042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34667077 - 34667043
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  34667077 tcggcattttgccagttgagctaggacttctggat 34667043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36754836 - 36754870
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36754836 tcggcattttgccagttgagctaggacttctggat 36754870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38490495 - 38490529
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38490495 tcggcattttgccagttgagctaggacttctggat 38490529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40592346 - 40592312
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40592346 tcggcattttgccagttgagctaggacttctggat 40592312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42160352 - 42160386
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42160352 tcggcattttgccagttgagctaggacttctggat 42160386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 42200959 - 42200991
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||    
T  42200959 ggcattttgccagttgagctaggacttctggat 42200991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6731575 - 6731540
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  6731575 tcggcattttgctagttgagctaggacttctggatg 6731540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7958079 - 7958114
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  7958079 tcggtattttgccagttgagctaggacttctggatg 7958114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10392678 - 10392643
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatg 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  10392678 tcggcattttaccagttgagctaggacttctggatg 10392643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34481766 - 34481797
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  34481766 tcggcattttgccagttgagctaggacttctg 34481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 727384 - 727418
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  727384 tcggcattttgtcagttgagctaggacttctggat 727418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7975109 - 7975143
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  7975109 tcggcattttgccagttgagctaggacttgtggat 7975143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12236154 - 12236120
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  12236154 tcggcattttaccagttgagctaggacttctggat 12236120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18368827 - 18368797
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  18368827 tcggcattttgccagttgagctaggacttct 18368797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18999362 - 18999328
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  18999362 tcggcattttgccagttgagttaggacttctggat 18999328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 35476589 - 35476619
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  35476589 cattttgccagttgagctaggacttctggat 35476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 35706881 - 35706851
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  35706881 cattttgccagttgagctaggacttctggat 35706851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39070052 - 39070019
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctgga 34  Q
    |||||||||| |||||||||||||||||||||||    
T  39070052 tcggcattttaccagttgagctaggacttctgga 39070019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 28855511 - 28855543
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||| ||||    
T  28855511 ggcattttgccagttgagctaggacttccggat 28855543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 32120640 - 32120608
Alignment:
Q  4 gcattttgccagttgagctaggacttctggatg 36  Q
    |||||||||||||||||||||||||||| ||||    
T  32120640 gcattttgccagttgagctaggacttctagatg 32120608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10635522 - 10635488
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10635522 tcggcattttgccagttgagctaggacttctggat 10635488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19338273 - 19338307
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19338273 tcggcattttgccagttgagctaggacttctggat 19338307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28999407 - 28999373
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28999407 tcggcattttgccagttgagctaggacttctggat 28999373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29005123 - 29005089
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  29005123 tcggcattttgccagttgagctaggacttctggat 29005089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40809308 - 40809342
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40809308 tcggcattttgccagttgagctaggacttctggat 40809342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40958669 - 40958703
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40958669 tcggcattttgccagttgagctaggacttctggat 40958703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42631080 - 42631114
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42631080 tcggcattttgccagttgagctaggacttctggat 42631114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43676119 - 43676153
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  43676119 tcggcattttgccagttgagctaggacttctggat 43676153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48314200 - 48314166
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48314200 tcggcattttgccagttgagctaggacttctggat 48314166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48391989 - 48391955
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48391989 tcggcattttgccagttgagctaggacttctggat 48391955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 14890318 - 14890285
Alignment:
Q  3 ggcattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||||    
T  14890318 ggcattttgccagttgagctaggacttctggatg 14890285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3315827 - 3315796
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  3315827 tcggcattttgccagttgagctaggacttctg 3315796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 24119689 - 24119658
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  24119689 tcggcattttgccagttgagctaggacttctg 24119658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 25083217 - 25083248
Alignment:
Q  4 gcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||||||    
T  25083217 gcattttgccagttgagctaggacttctggat 25083248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 41445125 - 41445156
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  41445125 tcggcattttgccagttgagctaggacttctg 41445156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 49948270 - 49948239
Alignment:
Q  5 cattttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||||    
T  49948270 cattttgccagttgagctaggacttctggatg 49948239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5598334 - 5598300
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  5598334 tcggcatttttccagttgagctaggacttctggat 5598300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13555819 - 13555849
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  13555819 tcggcattttgccagttgagctaggacttct 13555849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15906262 - 15906296
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  15906262 tcggcattttgctagttgagctaggacttctggat 15906296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17068185 - 17068151
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  17068185 tcggcattttaccagttgagctaggacttctggat 17068151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18475142 - 18475108
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  18475142 tcggtattttgccagttgagctaggacttctggat 18475108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19279947 - 19279981
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  19279947 tcggcattttaccagttgagctaggacttctggat 19279981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35010684 - 35010718
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  35010684 tcggcattttgctagttgagctaggacttctggat 35010718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 40685558 - 40685528
Alignment:
Q  5 cattttgccagttgagctaggacttctggat 35  Q
    |||||||||||||||||||||||||||||||    
T  40685558 cattttgccagttgagctaggacttctggat 40685528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43086566 - 43086600
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  43086566 tcggcattttgccagttgagctaggacttatggat 43086600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49500894 - 49500860
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  49500894 tcggcattttgccagttgagctaggacttgtggat 49500860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 270423 - 270452
Alignment:
Q  7 ttttgccagttgagctaggacttctggatg 36  Q
    ||||||||||||||||||||||||||||||    
T  270423 ttttgccagttgagctaggacttctggatg 270452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6812 - 6782
Alignment:
Q  1 tcggcattttgccagttgagctaggacttct 31  Q
    |||||||||||||||||||||||||||||||    
T  6812 tcggcattttgccagttgagctaggacttct 6782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8954 - 8988
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  8954 tcggcattttgccagttgagctatgacttctggat 8988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39408 - 39442
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  39408 tcggcattttaccagttgagctaggacttctggat 39442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7852 - 7888
Alignment:
Q  1 tcggcattttgccagttgagctaggacttctggatgg 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  7852 tcggcattttgccaattgagctaagacttctggatgg 7888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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