View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17918_high_3 (Length: 419)
Name: NF17918_high_3
Description: NF17918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17918_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 23 - 401
Target Start/End: Original strand, 38003500 - 38003878
Alignment:
| Q |
23 |
tggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaaca |
122 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38003500 |
tggaattatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaaca |
38003599 |
T |
|
| Q |
123 |
aacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatagtg |
222 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38003600 |
aacttaaggatgagaagaaggcaaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatagtg |
38003699 |
T |
|
| Q |
223 |
atgttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctatgtttctca |
322 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38003700 |
atattagattagattatttatgtaaagtttgtaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctatgtttcaaa |
38003799 |
T |
|
| Q |
323 |
gtgcatacccgatcagtattgaatttggtgagtgtgtgtattacgatgattagatggtaatggtattttgattacatga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38003800 |
gtgcatacccgatcagtattgaatttggtgagtgtgtgtattacgatgattagatggtaatggtattttgattacatga |
38003878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 38031749 - 38032073
Alignment:
| Q |
21 |
gatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38031749 |
gatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaa |
38031848 |
T |
|
| Q |
121 |
caaacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||| |
|
|
| T |
38031849 |
caaacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgattaacttatacatag |
38031948 |
T |
|
| Q |
221 |
tgatgttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctatgtttct |
320 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||| | |||| | | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38031949 |
tgatgttagattatattaattatgtaaattttgtaatcttaaacggc------aatattattcaatgaggaaagtttattcttcacatatctatgtttct |
38032042 |
T |
|
| Q |
321 |
cagtgcatacccgatcagtattgaatttggt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38032043 |
cagtgcatacccgatcagtattgaatttggt |
38032073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 342
Target Start/End: Original strand, 38025011 - 38025340
Alignment:
| Q |
23 |
tggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaaca |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38025011 |
tggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgctaaatcaatgtctcaagcaaagaatttctcttcttcttcatttcttgctacca |
38025110 |
T |
|
| Q |
123 |
aacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttg--------- |
213 |
Q |
| |
|
|| ||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38025111 |
aatttaaggatgagaagaagtccaaacaagcagaggagtctctaaggactgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatataa |
38025210 |
T |
|
| Q |
214 |
---------tacatagtgatgttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttc |
304 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |||||||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
38025211 |
ttattatattacatagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggc------aatattattcaatgaggaaagtttattctt- |
38025303 |
T |
|
| Q |
305 |
acatatctatgtttctcagtgcatacccgatcagtatt |
342 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38025304 |
-catatctttgtttctcagtgcatacccgatcagtatt |
38025340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 38028451 - 38028501
Alignment:
| Q |
153 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
203 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38028451 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38028501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 38043091 - 38043141
Alignment:
| Q |
153 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
203 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38043091 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38043141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 38067438 - 38067488
Alignment:
| Q |
153 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
203 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38067438 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38067488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 2912477 - 2912525
Alignment:
| Q |
158 |
gagtctttgaggactgtcatgtacttgagctgttggggtcccaattgat |
206 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2912477 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
2912525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 38046599 - 38046647
Alignment:
| Q |
153 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa |
201 |
Q |
| |
|
||||||| |||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
38046599 |
cagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaa |
38046647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 38022056 - 38022113
Alignment:
| Q |
144 |
ccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa |
201 |
Q |
| |
|
|||| ||| ||||||| |||||||| |||||||||| |||||| || ||||||||||| |
|
|
| T |
38022056 |
ccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
38022113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 38045095 - 38045148
Alignment:
| Q |
155 |
gaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgatta |
208 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || ||||||||||||| |||| |
|
|
| T |
38045095 |
gaggaatctttgaggaaggtcatgtacttgagttgctggggtcccaattaatta |
38045148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 38069110 - 38069155
Alignment:
| Q |
153 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcc |
198 |
Q |
| |
|
||||||| |||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
38069110 |
cagaggaatctttgagaacagtcatgtacttaagctgttggggtcc |
38069155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 16005483 - 16005531
Alignment:
| Q |
155 |
gaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
203 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16005483 |
gaggagtcattgaggacggtcatgtacttaagctgttggggtcccaatt |
16005531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University