View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17918_high_8 (Length: 211)
Name: NF17918_high_8
Description: NF17918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17918_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 45206252 - 45206364
Alignment:
| Q |
84 |
tcataaattgatatgatataaaaagagtgaaggtctagcatgcaagacaagagacagtcaaccagccaaagatacctgcctaccaataaaccaaacaaga |
183 |
Q |
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| T |
45206252 |
tcatatattgatatgatatgaaaagagtgaaggtctagcatgtaagacaagagacagtcaaccagccagagatacctgcctaccaataaaccaaacaaga |
45206351 |
T |
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| Q |
184 |
aacttcacttaat |
196 |
Q |
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| T |
45206352 |
gacttcacttaat |
45206364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 45212427 - 45212351
Alignment:
| Q |
106 |
aagagtgaaggtctagcatgcaagacaagagacagtcaaccagccaaagatacctgcctaccaataaaccaaacaag |
182 |
Q |
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| T |
45212427 |
aagagtgaaggtctagcatgtaagataagagacagtcaaaaagcctaggatacctgcctgctaataaactaaacaag |
45212351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 45202763 - 45202816
Alignment:
| Q |
91 |
ttgatatgatataaaaagagtgaaggtctagcatgcaagacaagagacagtcaa |
144 |
Q |
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| T |
45202763 |
ttgatatgatatgggaagagtgaaggtctagcatgtaagataagagacagtcaa |
45202816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 45206227 - 45206259
Alignment:
| Q |
11 |
agaaatgaaatcctgaaattaaacttcatatat |
43 |
Q |
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| T |
45206227 |
agaaaagaaatcctgaaattaaacttcatatat |
45206259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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