View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17918_low_1 (Length: 938)
Name: NF17918_low_1
Description: NF17918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17918_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 878; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 878; E-Value: 0
Query Start/End: Original strand, 17 - 926
Target Start/End: Original strand, 37076436 - 37077345
Alignment:
| Q |
17 |
acaaaaaagatatgaaataggaagtagcgtgtgtattaagcaaccgtgaaccataaataaaggtcgagagaagccatcatccataataactctaatagcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076436 |
acaaaaaagatatgaaataggaagtagcgtgtgtattaagcaacggtgaaccataaataaaggtcgagagaagccatcatccataataactctaatagcg |
37076535 |
T |
|
| Q |
117 |
ataactttccattctgaagtttgataaccatcgatcactcatcatggattgtaactttgtaatgaatataacttcaatcgaaaaaccaaccattacaatc |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076536 |
ataactttccattttgaagtttgataaccatcgatcactcatcatggattgtaactttgtaatgaatataacttcaatcgaaaaaccaaccattacaatc |
37076635 |
T |
|
| Q |
217 |
ccaaaagatgatccttttagcaactacttttacattaagttctattacattcaagttagttttcccttgcatctcaatgcctcaaactcagtatcgtctt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076636 |
ccaaaagatgatccttttagcaactacttttacattaagttctattacattcaagttagttttcccttgcatctcaatgcctcaaactcagtatcgtctt |
37076735 |
T |
|
| Q |
317 |
gtaggaccaccatgaagcaaatcccattgattccttgtgacatcttatgtaattgcgatgaaatttcattagataaggatgcctacatcttatatatgac |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37076736 |
gtaggaccaccatgaagcaaatcccattgattccttgtgacatcttatgtaattgcgatgaaatttcattagataaggatgccaacatcttatatatgac |
37076835 |
T |
|
| Q |
417 |
tatttatcctgacacattaaaacaaatcctgcccgatattggaaaacatgctaaggagatggtcgcaaataacgatgaaggtcataattggtggaaaata |
516 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37076836 |
tatttatcctgacatattaaaacaaatcctgcccgatattggaaaacatgctaaggagatagtcgcaaataacgatgaaggtcataattggtggaagata |
37076935 |
T |
|
| Q |
517 |
gttgtgacgcttatggtatattgaagatgatgatgctgtgaaagccgtacttgttttggatgatttgaaaaaggttggaatggatcactcatcttgttac |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076936 |
gttgtgacgcttatggtatattgaagatgatgatgctgtgaaagccgtacttgttttggatgatttgaaaaaggttggaatggatcactcatcttgttac |
37077035 |
T |
|
| Q |
617 |
tctagagatcaatgttcaatttgtttggaagagctcttcaatagaccagagtctgaatgtgttatgaccaaatgtttgcatgtttttcatgaagagtgta |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077036 |
tctagagatcaatgttcaatttgtttggaagagctcttcaatggaccagagtctgaatgtgttatgaccaaatgtttgcatgtttttcatgaagagtgta |
37077135 |
T |
|
| Q |
717 |
ttttccaatggctcaaaagattttccagtcatcaatcatccctcttgtgtccattgtgtcgcaataatgtgatattttagaaataaatcaaccaactcaa |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077136 |
ttttccaatggctcaaaagattttccagtcatcaatcatccctcttgtgtccattgtgtcgcaataatgtgatattttagaaataaatcaaccaactcaa |
37077235 |
T |
|
| Q |
817 |
ggatacttggcatggagttttttcttatgtttttatgacaggattgtgtattttcttttcctccgttatatatagtattatgaggtggtttttattgttc |
916 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077236 |
ggatacttgacatggagttttttcttatgtttttatgacaggattgtgtattttcttttcctccgttatatatagtattatgaggtggtttttattgttc |
37077335 |
T |
|
| Q |
917 |
ttagtataat |
926 |
Q |
| |
|
|||||||||| |
|
|
| T |
37077336 |
ttagtataat |
37077345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 800
Target Start/End: Complemental strand, 37494090 - 37493287
Alignment:
| Q |
23 |
aagatatgaaataggaagtagcgtgtgtattaagcaaccgtgaaccataaataaaggtcgagagaagccatcatccataataactctaatagcgataact |
122 |
Q |
| |
|
||||||| |||||||||||||||| | | ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37494090 |
aagatataaaataggaagtagcgtatttgttaagcaactgtgaaatataaataaaagtcgagagaagccatcatccataataaccctaatagcgataact |
37493991 |
T |
|
| Q |
123 |
ttccattctgaagtttgataaccatcgatcactcatcatggattgtaactttgtaatgaatataacttcaatcgaaaaaccaaccattacaatcccaaaa |
222 |
Q |
| |
|
||||| || |||||||||||||| || ||| || || |||| |||| | ||| |||| ||||||| |||||||||||||| |
|
|
| T |
37493990 |
ctccat-------------aa-----gatcactcatcatgaatcgtatctatgacctgaaaataagtccaaccgaagaaccaacatttacaatcccaaaa |
37493909 |
T |
|
| Q |
223 |
gatgatccttttagcaactacttttacattaagttctattacattcaagttagttttcccttgcatctcaatgcctcaaactcagtatcgtcttgtagga |
322 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||| |||| |||| ||||| |||||| || |
|
|
| T |
37493908 |
gatgatccttttagtaatcacttttacattaatttccattacatccaatttaactttcccttgcatctcaatgcatcaatctcattatcgacttgtaaga |
37493809 |
T |
|
| Q |
323 |
ccaccatgaagcaaatcccattgattccttgtgacatcttatgtaattgcgatgaaatttca---ttagataaggatgcctaca---tcttatat----- |
411 |
Q |
| |
|
| || ||| | ||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||| |
|
|
| T |
37493808 |
ctacgatgtatcaaatcctgttgattccttgtgacatcttatgtaattgcgatgaaattacaccgttagataaggatgccaacactttcttatattacac |
37493709 |
T |
|
| Q |
412 |
----------atgactatttatcctgacacattaaaacaaatcctg-cccgatattggaaaacatgctaaggagatggtcgcaaataacgatgaaggtca |
500 |
Q |
| |
|
||| |||||| |||||||| |||||||||||| ||| | |||||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
37493708 |
tttttcctccatgcctatttctcctgacatattaaaacaaattctgtcaagatattggaaaatatgctaaggagatggtcgcaaacaacaatgaaggtca |
37493609 |
T |
|
| Q |
501 |
taattggtggaaaatagttgtgacgctt-----------atggtatattgaagatgatgatgctgtgaaagccgtacttgtt---ttggatgatttgaaa |
586 |
Q |
| |
|
|||| ||||| | |||| |||||||||| |||||||||||||| ||| |||||| || | | ||||||| || | | || |||| | |
|
|
| T |
37493608 |
taataggtgggagatagatgtgacgctttctgtctatacatggtatattgaagctgaagatgctctggacgtcgtacttcttataataggtgggttgaca |
37493509 |
T |
|
| Q |
587 |
aaggttggaatggatcactcatcttgttactctagagatcaatg--------ttcaatttgtttggaagagctcttcaatagaccagagtctgaatgtgt |
678 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||||||| || || |||| ||||||| |
|
|
| T |
37493508 |
aacattggaatggataactcatcttgttactctacaactcaatgttcaatttttcaatttgtttggaagagctcttcaatggatcaaagtcacaatgtgt |
37493409 |
T |
|
| Q |
679 |
tatgaccaaatgtttgcatgtttttcatgaagagtgtattttccaatggctcaaaagattttccagtcatcaatcatccctcttgtgtccattgtgtcgc |
778 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| | | |||||||||||||||| || |||||||||||| |||| |
|
|
| T |
37493408 |
tatgacaaaatgtttgcatgtttttcataaagactgtattttccaatggttcaaaagttgcttcagtcatcaatcatccgtcatgtgtccattgtctcgc |
37493309 |
T |
|
| Q |
779 |
aataatgtgatattttagaaat |
800 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
37493308 |
aatattgtgatattttaaaaat |
37493287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 529 - 781
Target Start/End: Original strand, 37073189 - 37073441
Alignment:
| Q |
529 |
atggtatattgaagatgatgatgctgtgaaagccgtacttgttttggatgatttgaaaaaggttggaatggatcactcatcttgttactctagagatcaa |
628 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
37073189 |
atggtatattgaagatgaagatgctgtgaaagctgtacttgctgtggatgatttgaaaaaggttggaatggatcagtcatcttgttactctatggatcaa |
37073288 |
T |
|
| Q |
629 |
tgttcaatttgtttggaagagctcttcaatagaccagagtctgaatgtgttatgaccaaatgtttgcatgtttttcatgaagagtgtattttccaatggc |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37073289 |
tgttcaatttgtttggaagagctcttcaatggatcaaagtcagaatgtgttatgaccaaatgtttgcatgtttttcatgaagaatgtattttccaatggc |
37073388 |
T |
|
| Q |
729 |
tcaaaagattttccagtcatcaatcatccctcttgtgtccattgtgtcgcaat |
781 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37073389 |
tcaaaagttgctccagtcatcaatcatccctcttatgtccattgtgtcgcaat |
37073441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 529 - 926
Target Start/End: Complemental strand, 36904580 - 36904197
Alignment:
| Q |
529 |
atggtatattgaagatgatgatgctgtgaaagccgtacttgttttggatgatttgaaaaaggttggaatggatcactcatcttgttactctagagatcaa |
628 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
36904580 |
atggtatattgaagatgaagatgctgtgaaagctgtacttgctatggatgatttgaaaaaggttggaatggatcagtcatcttgttactctatggatcaa |
36904481 |
T |
|
| Q |
629 |
tgttcaatttgtttggaagagctcttcaatagaccagagtctgaatgtgttatgaccaaatgtttgcatgtttttcatgaagagtgtattttccaatggc |
728 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36904480 |
tgttcaatttgtttggaagagctcttcaaaggatcaaagtctgaatgtgttatgactgaatgtttgcatgtttttcataaagagtgtattttccaatggt |
36904381 |
T |
|
| Q |
729 |
tcaaaagattttccagtcatcaatcatccctcttgtgtccattgtgtcgcaataatgtgatatttt-agaaataaatcaaccaactcaaggat---actt |
824 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| || |||||||| | ||| |||||||||||||||||| | || |
|
|
| T |
36904380 |
tcaaaag------------------atccctcacgtgtccattgtgtcgcaatgataagatattttaaaaaaaaaatcaaccaactcaagggtgtaccta |
36904299 |
T |
|
| Q |
825 |
ggcatggagttttttcttatgtttttatgacaggattgtgtattttcttttcctccgttatatatagtattatgaggtggtttttattgttcttagtata |
924 |
Q |
| |
|
||| ||||| |||| ||||||| | |||| |||||||||||||||||||||| | || |||| |||||||||| ||| ||||| |||||||||||| |
|
|
| T |
36904298 |
tgcacggagtatttttttatgttcctgtgactggattgtgtattttcttttcctaccttgtatacagtattatgatgtgttttttggggttcttagtata |
36904199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 184 - 377
Target Start/End: Original strand, 37072848 - 37073041
Alignment:
| Q |
184 |
ataacttcaatcgaaaaaccaaccattacaatcccaaaagatgatccttttagcaactacttttacattaagttctattacattcaagttagttttccct |
283 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||| ||||||||||||||||||| || ||||||||||||| ||| ||||||| ||||||| |||||||| |
|
|
| T |
37072848 |
ataagttcaatcgaagaaccaacctttacaatctcaaaagatgatccttttagtaaagacttttacattaatttccattacatccaagttaattttccct |
37072947 |
T |
|
| Q |
284 |
tgcatctcaatgcctcaaactcagtatcgtcttgtaggaccaccatgaagcaaatcccattgattccttgtgacatcttatgtaattgcgatga |
377 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||| ||||||||||| | |||| || ||||||||| |||||||||||||||| ||||| |
|
|
| T |
37072948 |
tgcatctcaatgcctcaaactcattttctgcttgtagtaccaccatgaatcgaatcttttttattccttgtaacatcttatgtaattgtgatga |
37073041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 191 - 377
Target Start/End: Complemental strand, 36904920 - 36904734
Alignment:
| Q |
191 |
caatcgaaaaaccaaccattacaatcccaaaagatgatccttttagcaactacttttacattaagttctattacattcaagttagttttcccttgcatct |
290 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||||| || ||||||||||||| ||| ||||||| ||||||| |||||| |||||||| |
|
|
| T |
36904920 |
caatcgaagatccaacctttacaatcccaaaagatgatccttttaggaaagacttttacattaatttccattacatccaagttaattttcctttgcatct |
36904821 |
T |
|
| Q |
291 |
caatgcctcaaactcagtatcgtcttgtaggaccaccatgaagcaaatcccattgattccttgtgacatcttatgtaattgcgatga |
377 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||| | |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
36904820 |
caatgcctcaaactcattttctgcttgtaggaccaccatgaatcgaatcttttctattccttgtgacatcttatgtaattgtgatga |
36904734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 857 - 926
Target Start/End: Complemental strand, 37493268 - 37493199
Alignment:
| Q |
857 |
ggattgtgtattttcttttcctccgttatatatagtattatgaggtggtttttattgttcttagtataat |
926 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
37493268 |
ggattgtgtattttcttttccttcattatacatagtattataaggttgtttttaatgttcttagtataat |
37493199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 36904695 - 36904617
Alignment:
| Q |
416 |
ctatttatcctgacacattaaaacaaatcctgcccgatattggaaaacatgctaaggagatggtcgcaaataacgatga |
494 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||| || ||||||||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
36904695 |
ctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaggagatgatcgcaagtaacgatga |
36904617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 36746961 - 36747001
Alignment:
| Q |
341 |
cattgattccttgtgacatcttatgtaattgcgatgaaatt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36746961 |
cattgattccttgtgacatcttatgtaattgcgatgaaatt |
36747001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 416 - 488
Target Start/End: Original strand, 37073080 - 37073152
Alignment:
| Q |
416 |
ctatttatcctgacacattaaaacaaatcctgcccgatattggaaaacatgctaaggagatggtcgcaaataa |
488 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
37073080 |
ctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaagagatggtcgcaaataa |
37073152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 37183091 - 37183178
Alignment:
| Q |
19 |
aaaaaagatatgaaataggaagtagcgtgtgtattaagcaaccgtgaaccataaataaaggtcgagagaagccatcatccataataac |
106 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||||||| || ||| |||||||| |||||||||||||| ||| ||||| |
|
|
| T |
37183091 |
aaaaaagatatgaaataggaaatagcttgcgttttaagcaaccgtccactatatataaaggtgaagagaagccatcattcattataac |
37183178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 529 - 811
Target Start/End: Complemental strand, 41371620 - 41371338
Alignment:
| Q |
529 |
atggtatattgaagatgatgatgctgtgaaagccgtacttgttttggatgatttgaaaaaggttggaatggatcactcatcttgttactctagagatcaa |
628 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||||| || |||||| |
|
|
| T |
41371620 |
atggtatgttgaagataatgatgttgtgaaagccatacttgttgtggataggttgaaaaaggttggaatggatgattcatcttgttactataatgatcaa |
41371521 |
T |
|
| Q |
629 |
tgttcaatttgtttggaagagctcttcaatagaccagagtctgaatgtgttatgaccaaatgtttgcatgtttttcatgaagagtgtattttccaatggc |
728 |
Q |
| |
|
||| |||| |||||||||||| |||||||| || || |||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
41371520 |
tgtacaatatgtttggaagagttcttcaatggatcaaagtcagaacatgttatgaccaaatgtttgcatgtttttcataaagagtgcatttttcaatggc |
41371421 |
T |
|
| Q |
729 |
tcaaaagattttccagtcatcaatcatccctcttgtgtccattgtgtcgcaataatgtgatattttagaaataaatcaaccaa |
811 |
Q |
| |
|
||||||||| |||| ||||||||| |||| |||||||||||||||||||||| |||||| | ||| ||||||||||| |
|
|
| T |
41371420 |
tcaaaagatgcataagtcgtcaatcatcactctcgtgtccattgtgtcgcaataatcagatattatgaaaacaaatcaaccaa |
41371338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 41371966 - 41371878
Alignment:
| Q |
218 |
caaaagatgatccttttagcaactacttttacattaagttctattacattcaagttagttttcccttgcatctcaatgcctcaaactca |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||||| || ||| |||||||||||||||| |
|
|
| T |
41371966 |
caaaagatgatccttttaataactacttttacattaatttccattacaaccaagttaattttcctttacataccaatgcctcaaactca |
41371878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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