View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17918_low_2 (Length: 455)
Name: NF17918_low_2
Description: NF17918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17918_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 127 - 441
Target Start/End: Complemental strand, 16386566 - 16386252
Alignment:
| Q |
127 |
gttaccttttcccagatctgagagtggattttacagaaaccagcaacaacagtagcacctttcttcccttccttatactcaatacaaagatcctctttga |
226 |
Q |
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| T |
16386566 |
gttaccttttcccagatctgagagtgggttttacagaaaccagcaacaacagtagcacctttcttcccttccttatactcaatacaaagatcctctttga |
16386467 |
T |
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| Q |
227 |
ttccacaagtaatatgaaaacccaaaccacacttctgttcagaacaaaccaaagcacatccatcaaagcacccacatacataacacttctccaaccacct |
326 |
Q |
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| T |
16386466 |
ttccacaggtaatatgaaaacccaaaccacacttctgttcagagcaaaccaaagcacatccatcaaagcacccacatacataacacttctccaaccacct |
16386367 |
T |
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| Q |
327 |
cttctttggaattttagaacaatcaatcccttctctcccttctggatccacaaaaaacacttcaggcacaagtaaagcacaaaccagatggacccacttt |
426 |
Q |
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| T |
16386366 |
cttctttggaattttagaacaatcaatcccttctctcccttctggatccacaaaaaacacttcaggcacaagtaaagcacaaaccagatggacccacttt |
16386267 |
T |
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| Q |
427 |
ccatctgttgtttgt |
441 |
Q |
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| T |
16386266 |
ccatctgttgtttgt |
16386252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16386692 - 16386650
Alignment:
| Q |
1 |
aatatagatcttactccaaaaaataaatattcttaagaaactc |
43 |
Q |
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| T |
16386692 |
aatatagatcttactccaaaaaataaatattcttaagaaactc |
16386650 |
T |
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