View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17918_low_4 (Length: 377)
Name: NF17918_low_4
Description: NF17918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17918_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 33283117 - 33283499
Alignment:
| Q |
1 |
tatctggtgagcagcaccgttacctattctcttgttcatgttaagccttctcaatcaaactttaattaataaataaataaatatcttatatttttctcat |
100 |
Q |
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| T |
33283117 |
tatctggtgagcagcaccgttacctattctcttgttcatgttaagccttctcaatcaaactttaattaataaataaataaatatcttatatttttctcat |
33283216 |
T |
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| Q |
101 |
tattttc------aaaagatttctctgttttccatatagttgcatgttttggagttatttagccagaatattgttggtatctacacccgtgtgaatgtga |
194 |
Q |
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| T |
33283217 |
tattttcgatttcaaaagatttctctgttttccatatagttgcatgttttggagttatttagccagaatattgttggtatctacacccgtgtgaatgtga |
33283316 |
T |
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| Q |
195 |
tattggtttcttaataaagaaaatgtagtccttgaatgcataaggtcaaaagcttacggacaaagaactgaaggnnnnnnnnctaaatcacgcagaccga |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
33283317 |
tattggtttcttaataaagaaaatgtagtccttgaatgcataaggtcaaaagcttacggacaaagaactgaaggaaaaaaaactaaatcatgcagaccga |
33283416 |
T |
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| Q |
295 |
taccgtgatattaggataactcttacatcattcaaactaacatgtaattgttaattccccctgcagtcaagactcacaacata |
377 |
Q |
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| T |
33283417 |
taccgtgattttaggataactcttacatcattcaaactaacatgtaattgttaattccctctgcagtcaagactcacaacata |
33283499 |
T |
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