View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17918_low_5 (Length: 322)
Name: NF17918_low_5
Description: NF17918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17918_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 33118483 - 33118382
Alignment:
| Q |
81 |
caattagaattgttgggttaggtgcaatagccatgattactgatccagcaaagaatagtccatctgcataaaggattgtaattttccttccaaaccgatc |
180 |
Q |
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| T |
33118483 |
caattagaattgttgggttaggtgcaatagccatgattactgatccagcaaagaatagtccatctgcataaaggattgtaattttccttccaaaccgatc |
33118384 |
T |
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| Q |
181 |
at |
182 |
Q |
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|| |
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| T |
33118383 |
at |
33118382 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 21560511 - 21560710
Alignment:
| Q |
17 |
gagatataaagaggggatgccattgatgccattccaacaccaagaccaacaaaaactctaccaacaattagaattgttgggttaggtgcaatagccatga |
116 |
Q |
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| T |
21560511 |
gagatatataaaggagaagccattgaagccattccaacaccaagaccaacaaagactctaccaacaatgagaatagctggatttattgcagcagccataa |
21560610 |
T |
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| Q |
117 |
ttactgatccagcaaagaatagtccatctgcataaaggattgtaattttccttccaaaccgatcattcatccatccaccacctgaagctcctataattgc |
216 |
Q |
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| T |
21560611 |
taactgagccaatgaaaaagagtgcatctgcaagaattattgcttttttccttccaaatcgatcgttgatccatccaccaactgatgcacctatgattgc |
21560710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 21493335 - 21493404
Alignment:
| Q |
15 |
cagagatataaagaggggatgccattgatgccattccaacaccaagaccaacaaaaactctaccaacaat |
84 |
Q |
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| T |
21493335 |
cagagatgtacaaaggagatgccattgaagccatcccgacaccaagaccaacaaatactcgaccaacaat |
21493404 |
T |
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