View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17918_low_6 (Length: 290)

Name: NF17918_low_6
Description: NF17918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17918_low_6
NF17918_low_6
[»] chr7 (32 HSPs)
chr7 (1-274)||(814792-815065)
chr7 (72-273)||(3012346-3012547)
chr7 (112-280)||(38128911-38129079)
chr7 (112-270)||(42439492-42439650)
chr7 (112-274)||(4843339-4843505)
chr7 (133-279)||(21688145-21688292)
chr7 (170-274)||(28694016-28694120)
chr7 (72-280)||(19377424-19377637)
chr7 (175-269)||(21932760-21932854)
chr7 (188-277)||(41759602-41759691)
chr7 (112-239)||(41862276-41862403)
chr7 (211-280)||(23704486-23704555)
chr7 (112-187)||(26722889-26722964)
chr7 (211-280)||(26722955-26723024)
chr7 (211-280)||(35300445-35300514)
chr7 (215-279)||(38991181-38991245)
chr7 (218-280)||(7873232-7873294)
chr7 (218-279)||(30852373-30852434)
chr7 (218-265)||(5991432-5991479)
chr7 (86-158)||(7873124-7873196)
chr7 (112-158)||(22206616-22206662)
chr7 (112-158)||(22228077-22228123)
chr7 (133-187)||(23704441-23704495)
chr7 (78-151)||(41759523-41759596)
chr7 (218-265)||(25688202-25688249)
chr7 (112-158)||(28693933-28693979)
chr7 (112-158)||(30852449-30852495)
chr7 (133-187)||(35300400-35300454)
chr7 (72-158)||(21932632-21932718)
chr7 (112-156)||(5991350-5991394)
chr7 (229-265)||(22206709-22206745)
chr7 (229-265)||(22227994-22228030)
[»] chr4 (49 HSPs)
chr4 (118-280)||(25237606-25237768)
chr4 (72-273)||(52373775-52373980)
chr4 (133-280)||(2521870-2522017)
chr4 (170-279)||(49745070-49745179)
chr4 (175-279)||(41972418-41972522)
chr4 (136-273)||(8901840-8901976)
chr4 (175-280)||(36947548-36947653)
chr4 (175-274)||(50099876-50099975)
chr4 (72-187)||(10058627-10058742)
chr4 (211-279)||(31364166-31364234)
chr4 (211-280)||(4728588-4728657)
chr4 (112-187)||(31364225-31364300)
chr4 (211-280)||(10058567-10058636)
chr4 (211-279)||(10715686-10715755)
chr4 (211-279)||(10929456-10929525)
chr4 (72-158)||(4552325-4552411)
chr4 (211-280)||(46645633-46645702)
chr4 (72-158)||(46645743-46645829)
chr4 (211-279)||(4552216-4552284)
chr4 (206-274)||(31929043-31929111)
chr4 (211-279)||(40969255-40969323)
chr4 (220-279)||(50383919-50383978)
chr4 (211-272)||(2576209-2576271)
chr4 (218-272)||(14044395-14044449)
chr4 (206-272)||(41955263-41955329)
chr4 (112-165)||(2017367-2017420)
chr4 (72-158)||(32006023-32006109)
chr4 (211-279)||(2017454-2017522)
chr4 (218-270)||(9003607-9003659)
chr4 (218-270)||(9694139-9694191)
chr4 (73-158)||(43003075-43003160)
chr4 (119-158)||(2521835-2521874)
chr4 (112-155)||(4728701-4728744)
chr4 (112-155)||(41972372-41972415)
chr4 (133-187)||(10715746-10715800)
chr4 (112-158)||(10715796-10715842)
chr4 (133-187)||(10929516-10929570)
chr4 (112-158)||(10929566-10929612)
chr4 (112-158)||(50100010-50100056)
chr4 (142-187)||(4728648-4728693)
chr4 (119-160)||(11826985-11827026)
chr4 (142-187)||(40969314-40969359)
chr4 (112-159)||(9003694-9003741)
chr4 (133-180)||(32005980-32006027)
chr4 (72-155)||(2576315-2576398)
chr4 (133-187)||(4552275-4552329)
chr4 (114-148)||(50384024-50384058)
chr4 (142-187)||(2017418-2017463)
chr4 (72-158)||(14044464-14044550)
[»] chr2 (34 HSPs)
chr2 (72-279)||(17249349-17249556)
chr2 (118-280)||(17148811-17148976)
chr2 (142-270)||(12000563-12000691)
chr2 (133-268)||(304063-304198)
chr2 (133-270)||(15651247-15651384)
chr2 (112-223)||(45444383-45444494)
chr2 (178-274)||(25562971-25563067)
chr2 (73-243)||(16220919-16221089)
chr2 (170-274)||(41010511-41010615)
chr2 (211-279)||(6799902-6799970)
chr2 (211-274)||(18299159-18299222)
chr2 (178-272)||(33909325-33909419)
chr2 (211-279)||(13203798-13203866)
chr2 (211-279)||(41114886-41114954)
chr2 (211-274)||(29257402-29257465)
chr2 (211-272)||(22572717-22572778)
chr2 (112-185)||(2475919-2475992)
chr2 (112-187)||(22572651-22572726)
chr2 (72-158)||(29257506-29257592)
chr2 (124-196)||(34756825-34756897)
chr2 (112-158)||(41010652-41010698)
chr2 (119-158)||(18299079-18299118)
chr2 (206-273)||(34756728-34756795)
chr2 (133-187)||(6799857-6799911)
chr2 (133-187)||(18299114-18299168)
chr2 (112-158)||(41114799-41114845)
chr2 (133-187)||(41114841-41114895)
chr2 (118-158)||(6799821-6799861)
chr2 (206-244)||(13654785-13654823)
chr2 (212-274)||(15429214-15429276)
chr2 (112-158)||(25563112-25563158)
chr2 (142-187)||(13203857-13203902)
chr2 (133-194)||(35531900-35531961)
chr2 (124-196)||(15429312-15429384)
[»] chr1 (40 HSPs)
chr1 (112-279)||(9527075-9527242)
chr1 (76-274)||(34459144-34459342)
chr1 (76-243)||(49898442-49898609)
chr1 (133-279)||(4642009-4642155)
chr1 (170-279)||(24646083-24646192)
chr1 (112-279)||(6802014-6802185)
chr1 (170-280)||(24745441-24745551)
chr1 (211-274)||(6331721-6331784)
chr1 (72-187)||(31844531-31844646)
chr1 (72-187)||(33468861-33468976)
chr1 (210-279)||(27584029-27584098)
chr1 (211-273)||(31844637-31844699)
chr1 (211-280)||(14727359-14727428)
chr1 (211-279)||(25011553-25011621)
chr1 (112-187)||(6331775-6331850)
chr1 (211-274)||(27460731-27460794)
chr1 (197-274)||(48940419-48940496)
chr1 (112-187)||(8239382-8239457)
chr1 (211-279)||(37154007-37154075)
chr1 (211-279)||(44305442-44305510)
chr1 (72-158)||(14727469-14727555)
chr1 (211-280)||(8239320-8239391)
chr1 (212-279)||(25007494-25007561)
chr1 (117-158)||(4641972-4642013)
chr1 (72-158)||(25007603-25007689)
chr1 (72-158)||(44305551-44305637)
chr1 (73-158)||(37153881-37153966)
chr1 (211-271)||(44238875-44238935)
chr1 (72-156)||(4774113-4774197)
chr1 (167-233)||(4163481-4163546)
chr1 (133-187)||(14727419-14727473)
chr1 (112-158)||(27460818-27460864)
chr1 (117-155)||(1428354-1428392)
chr1 (133-187)||(27583985-27584039)
chr1 (211-253)||(33468967-33469009)
chr1 (142-187)||(25011518-25011562)
chr1 (206-243)||(33169333-33169370)
chr1 (147-187)||(1428405-1428445)
chr1 (211-243)||(1428436-1428468)
chr1 (231-279)||(4774037-4774085)
[»] chr5 (46 HSPs)
chr5 (72-272)||(21069046-21069246)
chr5 (133-279)||(15503946-15504092)
chr5 (112-274)||(767317-767483)
chr5 (167-280)||(16667455-16667568)
chr5 (142-274)||(17192606-17192738)
chr5 (112-247)||(13942683-13942821)
chr5 (112-280)||(12267313-12267484)
chr5 (72-187)||(33006996-33007111)
chr5 (119-243)||(8214576-8214701)
chr5 (112-274)||(36234485-36234651)
chr5 (211-274)||(30249000-30249063)
chr5 (211-274)||(34846402-34846465)
chr5 (112-187)||(34846456-34846531)
chr5 (211-274)||(35468938-35469001)
chr5 (133-243)||(6900800-6900910)
chr5 (211-280)||(33006936-33007005)
chr5 (211-280)||(15675342-15675411)
chr5 (218-265)||(16567847-16567894)
chr5 (72-158)||(2476504-2476590)
chr5 (72-158)||(14832701-14832787)
chr5 (206-262)||(12317956-12318012)
chr5 (211-279)||(34443996-34444064)
chr5 (124-196)||(39605784-39605856)
chr5 (218-280)||(7162096-7162158)
chr5 (112-158)||(15675452-15675498)
chr5 (112-158)||(37552053-37552099)
chr5 (112-158)||(37654883-37654929)
chr5 (218-280)||(43228655-43228717)
chr5 (72-158)||(7161974-7162060)
chr5 (72-155)||(1672377-1672460)
chr5 (213-279)||(7159609-7159675)
chr5 (218-272)||(32953680-32953734)
chr5 (112-158)||(34444105-34444151)
chr5 (112-158)||(35469042-35469088)
chr5 (142-187)||(30249054-30249099)
chr5 (124-196)||(13695156-13695228)
chr5 (133-180)||(14832783-14832830)
chr5 (133-187)||(2476454-2476508)
chr5 (112-158)||(6900906-6900952)
chr5 (206-236)||(13695096-13695126)
chr5 (112-158)||(16567930-16567976)
chr5 (112-158)||(32953598-32953644)
chr5 (133-187)||(34444055-34444109)
chr5 (133-187)||(35468992-35469046)
chr5 (238-272)||(42989571-42989605)
chr5 (124-196)||(9738499-9738571)
[»] chr3 (39 HSPs)
chr3 (142-272)||(33179073-33179202)
chr3 (112-272)||(41218285-41218449)
chr3 (141-279)||(53068278-53068416)
chr3 (72-187)||(26370932-26371047)
chr3 (65-185)||(37516739-37516859)
chr3 (211-280)||(26371038-26371107)
chr3 (170-250)||(41358590-41358670)
chr3 (211-274)||(7500997-7501060)
chr3 (212-279)||(53651934-53652001)
chr3 (211-280)||(37516677-37516746)
chr3 (211-279)||(44047620-44047688)
chr3 (112-187)||(25391775-25391850)
chr3 (178-279)||(47511628-47511729)
chr3 (218-279)||(53987900-53987961)
chr3 (211-279)||(28311313-28311381)
chr3 (213-277)||(38239491-38239555)
chr3 (218-272)||(35077267-35077321)
chr3 (112-158)||(53987976-53988022)
chr3 (72-158)||(28311422-28311508)
chr3 (211-279)||(14461101-14461169)
chr3 (218-274)||(26278404-26278460)
chr3 (209-268)||(36869966-36870025)
chr3 (208-250)||(497414-497456)
chr3 (133-187)||(7501051-7501105)
chr3 (112-158)||(7501101-7501147)
chr3 (218-279)||(9600386-9600447)
chr3 (73-155)||(33178983-33179065)
chr3 (211-279)||(25391841-25391909)
chr3 (208-251)||(43447620-43447663)
chr3 (133-187)||(14461160-14461214)
chr3 (133-187)||(43700165-43700219)
chr3 (133-187)||(44047679-44047733)
chr3 (112-158)||(44047729-44047775)
chr3 (142-187)||(12909923-12909968)
chr3 (72-158)||(14461210-14461296)
chr3 (117-158)||(43700128-43700169)
chr3 (112-160)||(26278473-26278521)
chr3 (128-196)||(43447695-43447763)
chr3 (211-243)||(43700210-43700242)
[»] chr6 (32 HSPs)
chr6 (133-274)||(2836139-2836280)
chr6 (197-279)||(339366-339448)
chr6 (211-280)||(2941252-2941321)
chr6 (211-279)||(1781039-1781107)
chr6 (72-187)||(1780933-1781048)
chr6 (211-279)||(23663776-23663844)
chr6 (211-273)||(9696092-9696154)
chr6 (211-280)||(9046932-9047001)
chr6 (211-279)||(10397809-10397877)
chr6 (211-279)||(34249030-34249098)
chr6 (117-236)||(34188856-34188979)
chr6 (211-280)||(15122073-15122142)
chr6 (211-280)||(15528976-15529045)
chr6 (142-203)||(31200138-31200199)
chr6 (77-158)||(9696195-9696276)
chr6 (72-157)||(10397699-10397784)
chr6 (162-203)||(31188313-31188354)
chr6 (218-273)||(14938934-14938989)
chr6 (112-158)||(2836097-2836143)
chr6 (133-187)||(2941312-2941366)
chr6 (112-158)||(2941362-2941408)
chr6 (112-158)||(2960812-2960858)
chr6 (133-187)||(9696145-9696199)
chr6 (112-158)||(23663689-23663735)
chr6 (112-158)||(34248943-34248989)
chr6 (112-165)||(31188242-31188295)
chr6 (119-155)||(31200094-31200130)
chr6 (112-155)||(28614334-28614377)
chr6 (112-158)||(339478-339524)
chr6 (133-187)||(9046887-9046941)
chr6 (133-187)||(15529036-15529090)
chr6 (218-279)||(2960715-2960776)
[»] chr8 (22 HSPs)
chr8 (170-270)||(13243133-13243233)
chr8 (142-280)||(39431610-39431748)
chr8 (112-265)||(31500743-31500902)
chr8 (170-274)||(34282873-34282977)
chr8 (211-279)||(24965063-24965131)
chr8 (211-279)||(28928089-28928158)
chr8 (211-280)||(36406506-36406575)
chr8 (206-279)||(21138070-21138143)
chr8 (72-156)||(36406379-36406463)
chr8 (112-187)||(24965122-24965197)
chr8 (112-158)||(34282790-34282836)
chr8 (226-279)||(27321882-27321935)
chr8 (142-187)||(28928149-28928194)
chr8 (112-155)||(27321792-27321835)
chr8 (112-158)||(3383949-3383995)
chr8 (133-187)||(3383991-3384045)
chr8 (112-158)||(35384295-35384341)
chr8 (142-180)||(36406470-36406508)
chr8 (112-158)||(38214865-38214911)
chr8 (206-234)||(8968412-8968440)
chr8 (124-196)||(21137969-21138040)
chr8 (119-155)||(28928202-28928238)
[»] scaffold0021 (3 HSPs)
scaffold0021 (112-272)||(112135-112292)
scaffold0021 (178-272)||(109283-109377)
scaffold0021 (112-158)||(109234-109280)
[»] scaffold0618 (2 HSPs)
scaffold0618 (211-274)||(1731-1794)
scaffold0618 (72-158)||(1835-1921)
[»] scaffold0075 (5 HSPs)
scaffold0075 (211-279)||(6941-7009)
scaffold0075 (211-279)||(11554-11622)
scaffold0075 (112-158)||(11663-11709)
scaffold0075 (133-187)||(7000-7054)
scaffold0075 (133-187)||(11613-11667)
[»] scaffold0638 (2 HSPs)
scaffold0638 (72-160)||(4215-4303)
scaffold0638 (218-280)||(4140-4202)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 814792 - 815065
Alignment:
Q  1 tatgttatgaactaaatacatcaacttgtattgacgtatttatctcttataagggtcaaatgttatgagccgtggcggagccaataattatatagagtct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  814792 tatgttatgaactaaatacatcaacttgtattgacgtatttatctcttataagggtcaaatgttatgagcagtggcggagccaggaattatatagagtct 814891  T
Q  101 gggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtatt 200  Q
    ||||       |||| ||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| ||||||||||| ||||||||||    
T  814892 gggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattttctgcggatatatctttcgtgcagatcctaaaattctaaggtatt 814991  T
Q  201 acctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||| ||||||||||||| |||||||||||||| | ||||||| ||| ||||| |||||||||||||||||    
T  814992 acctcacttgggaacctaaattcttggcaaaatctgcaagaaatgtattttctgcggaatttacacaaaaatcc 815065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 72 - 273
Target Start/End: Complemental strand, 3012547 - 3012346
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||||||||||  |||| ||||||||||||||       |||||||||||||||||||||||||||  |||||||||||||||||| | ||||||||||    
T  3012547 gtggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcctgcggatatatctt 3012448  T
Q  172 tcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaa 271  Q
    || ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  3012447 tcctgcggatcctaaaatcctatggtattacctcacctgggaacctatatccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtacacaaaaa 3012348  T
Q  272 tc 273  Q
    ||    
T  3012347 tc 3012346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 280
Target Start/End: Original strand, 38128911 - 38129079
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||| ||||||||||| |||||||||||  ||||||||||||||||| |  ||||||||||| ||||||||||||||||||| | |||| ||||||||||    
T  38128911 ttatcgcaaaacgttatttccttcctgcagataatttcacatttcctgcacatatatctttcctgcggatcctaaaatcctatgatattgcctcacctgg 38129010  T
Q  212 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||| || |||||||||||||||| |  ||||||||||||||||| |||||    
T  38129011 gaacctaaatccttggcaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatccgcaggt 38129079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 42439492 - 42439650
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||| ||||||||||||||| || || | ||||||||||||||| |||| |||||||||||| | || || ||||||| ||| ||||||||||| ||| |    
T  42439492 ttatcgcaaaacgttacttcttttctacgaataatttcacattttctacggatatatctttcatacgcattctaaaattctatggtattacctctcctag 42439591  T
Q  212 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaa 270  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  42439592 gaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaa 42439650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 274
Target Start/End: Complemental strand, 4843505 - 4843339
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgata-tatc---tttcgtgcggatcctaaaatcctaaggtattacctcac 207  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||| | |||| | ||   |||| ||||||||||||||||| || ||||||||||||    
T  4843505 ttatcgcaaaacgttacttctttcctgcgaataatttcacatttcctgcggataatttcacatttcctgcggatcctaaaatcccaatgtattacctcac 4843406  T
Q  208 ctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||||||||||||||||||||||||| | |||||||||||| |||| ||| |||||||| ||||    
T  4843405 ctgggaacctaaatccttggcaaaatctgcatgaaatgtgtttcatgcggaatgtacacaaatatcc 4843339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 21688292 - 21688145
Alignment:
Q  133 ttcctgctaataatttcacatttcc-taccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaa 231  Q
    |||||||  ||||||||||||||   ||| |||||||||||| |||||||| |||||||||||||||||| ||||||||  ||||||||||||| |||||    
T  21688292 ttcctgcagataatttcacattttaatacggatatatctttcctgcggatcttaaaatcctaaggtattatctcacctgataacctaaatccttcgcaaa 21688193  T
Q  232 atctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  21688192 atctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 21688145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 28694016 - 28694120
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||    
T  28694016 tttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatcctgggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaa 28694115  T
Q  270 aatcc 274  Q
    |||||    
T  28694116 aatcc 28694120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 280
Target Start/End: Complemental strand, 19377637 - 19377424
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacattt-cctaccgata-tatc 169  Q
    ||||| ||||||| |||||||||||||||||||       |||| |||||| ||||  || ||||||| ||||||||||||||| ||| | |||| | ||    
T  19377637 gtggcagagccaagaattatatagagtctgggcaaaaaaattatcgcaaaatgttatgtctttcctgcgaataatttcacattttcctgcggataatttc 19377538  T
Q  170 ---tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacac 266  Q
       |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |||||| || ||||| |||    
T  19377537 acatttcctgcggatcctaaaatcctaaggtattacctcacctagggacctaaatccttggcaaaatctgcaggaaatgtatttccttcggaatttccac 19377438  T
Q  267 aaaaatccacaggt 280  Q
    ||| |||| |||||    
T  19377437 aaacatccgcaggt 19377424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 175 - 269
Target Start/End: Original strand, 21932760 - 21932854
Alignment:
Q  175 tgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  21932760 tgcggatccaaaaatcctatggtattacctcacctggaaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa 21932854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 41759602 - 41759691
Alignment:
Q  188 atcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccaca 277  Q
    |||||| ||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  41759602 atcctatggtgttacctcaactcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacaccaaaatccaca 41759691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 41862276 - 41862403
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||| |||||||  |||||| || ||||  ||||||  ||||||||| | |||||| ||||| || ||||||||||||||||||||| ||||||| |||     
T  41862276 ttatcgcaaaacaatacttcatttctgcggataattatacatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcatctga 41862375  T
Q  212 gaacctaaatccttggcaaaatctgtag 239  Q
    ||||||||||||||||||||||| ||||    
T  41862376 gaacctaaatccttggcaaaatccgtag 41862403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 23704486 - 23704555
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||||||||    
T  23704486 ggaacctaaatccttggcaaaatctgcaggaaatgtgttttcggcggaatttacacaaaaatccacaggt 23704555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 26722889 - 26722964
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||| ||||||    
T  26722889 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttacggatatatctttcctgcggaacctaaa 26722964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 26722955 - 26723024
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||| |||||    
T  26722955 ggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggt 26723024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 35300445 - 35300514
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| |||||||   ||||||||| ||||||||||||||||| |||||    
T  35300445 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggt 35300514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 38991181 - 38991245
Alignment:
Q  215 cctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||| |||||||||||||||  || |||||| |||||||||| ||||    
T  38991181 cctaaatccttggcaaaatctgcaggaaatgtgtttccaacggaatttatacaaaaatccgcagg 38991245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 7873232 - 7873294
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||| || |||||    
T  7873232 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaacccgcaggt 7873294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 30852434 - 30852373
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| |||| ||| ||||    
T  30852434 aaatcctaggcaaaatctgaaggaaatgtgtttcctgcggaatttacataaaattccgcagg 30852373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 5991432 - 5991479
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttaca 265  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  5991432 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 5991479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 7873124 - 7873196
Alignment:
Q  86 aattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||       |||| |||||| ||||||||||||| |||||||||||||||||||||    
T  7873124 aattttatagagtctgggcaaaaaaattatcgcaaaatgttacttccttcccgctaataatttcacatttcct 7873196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 22206616 - 22206662
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||    
T  22206616 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 22206662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 22228123 - 22228077
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||    
T  22228123 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 22228077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 23704441 - 23704495
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  23704441 ttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 23704495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 41759523 - 41759596
Alignment:
Q  78 gagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcac 151  Q
    ||||||| |||| ||||||||||||||       |||| ||| ||||||||||||||||||| |||||||||||    
T  41759523 gagccaagaattttatagagtctgggcaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcac 41759596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 25688202 - 25688249
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttaca 265  Q
    ||||||| ||||||||||| ||||||| ||||||||||| ||||||||    
T  25688202 aaatcctaggcaaaatctgcaggaaatatgtttcctgcggaatttaca 25688249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 28693933 - 28693979
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||| |||||||||| |||| ||||||||||||||||||    
T  28693933 ttatcgcaaaactttacttcctttctgcgaataatttcacatttcct 28693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 30852495 - 30852449
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| ||| |||||||||||| ||||||||||||||||||    
T  30852495 ttatcgcaaaatgttgcttccttcctgcgaataatttcacatttcct 30852449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 35300400 - 35300454
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  35300400 ttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 35300454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 21932632 - 21932718
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||| ||  |||| ||||||||||||||       |||| |||||| |||||||| ||||||| |||||||||| |||||||    
T  21932632 gtggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcct 21932718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 5991350 - 5991394
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttc 156  Q
    |||| |||||| |||||||||||||||| |||||||| |||||||    
T  5991350 ttatcgcaaaatgttacttccttcctgcgaataattttacatttc 5991394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 22206709 - 22206745
Alignment:
Q  229 aaaatctgtaggaaatgtgtttcctgcgaaatttaca 265  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  22206709 aaaatctgcaggaaatgtgtttcctgcggaatttaca 22206745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 22228030 - 22227994
Alignment:
Q  229 aaaatctgtaggaaatgtgtttcctgcgaaatttaca 265  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  22228030 aaaatctgcaggaaatgtgtttcctgcggaatttaca 22227994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 25237768 - 25237606
Alignment:
Q  118 caaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacct 217  Q
    |||||||||||||||||||||| |||||||||||||||||| | |||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  25237768 caaaacgttacttccttcctgcgaataatttcacatttcctgcggatacatctttcctgcgaatcctaaaatcataaggtattacctcacctgggaacct 25237669  T
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||    
T  25237668 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaattccgcaggt 25237606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 273
Target Start/End: Complemental strand, 52373980 - 52373775
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgata-tatc- 169  Q
    ||||||||||||  |||| ||||||||||| ||       |||| ||||||||||||||||||||||| |||||||||||||||||| | |||| | ||     
T  52373980 gtggcggagccaggaattttatagagtctgtgcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttca 52373881  T
Q  170 --tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacaca 267  Q
      |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||  |||| ||||| ||||||||||    
T  52373880 catttcatgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccctgacaaaatctgcaagaaatacgttttctgcggaatttacaca 52373781  T
Q  268 aaaatc 273  Q
    ||||||    
T  52373780 aaaatc 52373775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 133 - 280
Target Start/End: Original strand, 2521870 - 2522017
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaa 232  Q
    |||||||  ||||| |||||||| || | ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||    
T  2521870 ttcctgcggataatatcacattttctgcggatatgtctttcctgcggatcctaaaatcctaagatattacctcacctgggaacctaaatccttgataaaa 2521969  T
Q  233 tctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||  ||||||||||||||||||| | ||||||||||||||| |||||    
T  2521970 tctacaggaaatgtgtttcctgcggactttacacaaaaatccgcaggt 2522017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 49745179 - 49745070
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||    
T  49745179 tttcctgcggatcctaaaatcctaaggtattacctcacctaggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctacggaatttacacaaa 49745080  T
Q  270 aatccacagg 279  Q
    |||| |||||    
T  49745079 aatctacagg 49745070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 41972418 - 41972522
Alignment:
Q  175 tgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  41972418 tgcggatcctaaaatcttaagatattacctcacctgggaaccttaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 41972517  T
Q  275 acagg 279  Q
     ||||    
T  41972518 gcagg 41972522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 8901976 - 8901840
Alignment:
Q  136 ctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatct 235  Q
    |||| ||||||||||||||| || | ||| ||||||||  | |||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  8901976 ctgcgaataatttcacatttactgcggatgtatctttcccgtggatcctaaaatcctaaggtattacctcac-tggaaatctaaatccttggcaaaatct 8901878  T
Q  236 gtaggaaatgtgtttcctgcgaaatttacacaaaaatc 273  Q
    | ||||||||||||||||||| | ||||||||||||||    
T  8901877 gcaggaaatgtgtttcctgcggagtttacacaaaaatc 8901840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 36947653 - 36947548
Alignment:
Q  175 tgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||| ||||||||||  |||||| ||||||||||    
T  36947653 tgcggatcctaaaatcctaaggtattaccacacctgggaacctaaattcttggcaaaatccgcaggaaatatgtttcctgcagaatttatacaaaaatcc 36947554  T
Q  275 acaggt 280  Q
     |||||    
T  36947553 gcaggt 36947548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 50099975 - 50099876
Alignment:
Q  175 tgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || || |||||  |||||| || |||||||||||||||||    
T  50099975 tgcggatcctaaaatcctaaggtattacttcacctgggaacctaaatccttagcaaaatttgcagaaaatgaatttcctacggaatttacacaaaaatcc 50099876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 10058742 - 10058627
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  10058742 gtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctt 10058643  T
Q  172 tcgtgcggatcctaaa 187  Q
    || |||||| ||||||    
T  10058642 tcctgcggaacctaaa 10058627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 31364234 - 31364166
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  31364234 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 31364166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 4728657 - 4728588
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||    
T  4728657 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttactcaaaaatccgcaggt 4728588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 31364300 - 31364225
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||||| ||||||    
T  31364300 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatcttttctgcggaacctaaa 31364225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 10058636 - 10058567
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||| |||||    
T  10058636 ggaacctaaatccttggtaaaatctgctggaaatgtgtttcctgcggaatttacacaaaattccccaggt 10058567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 10715755 - 10715686
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtagga-aatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||| ||||    
T  10715755 ggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcagg 10715686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 10929525 - 10929456
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtagga-aatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||| ||||    
T  10929525 ggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcagg 10929456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 4552411 - 4552325
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||||||||||       |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  4552411 gtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttcct 4552325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 46645702 - 46645633
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||  ||||||||||||||||| |||||    
T  46645702 ggaacctaaactcttggcaaaatctgcatgaaatgtgtttcctgcagaatttacacaaaaatccgcaggt 46645633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 46645829 - 46645743
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| |||||||||||||        |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  46645829 gtggcggagccaggaattttatagagtctgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 46645743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 4552284 - 4552216
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||||||   ||||||||| |||||||||| |||||| ||||    
T  4552284 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacacaaatccgcagg 4552216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 31929043 - 31929111
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||||| || |||||||||||||| |||  ||||||||  |||||||    
T  31929043 acctgggaacctaaatccttggcaaaatttgcaggaaatgtgtttcttgcagaatttacaataaaatcc 31929111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 40969323 - 40969255
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||| ||| ||||||||| || |||||||||||||||  ||||||||||||||||| ||||    
T  40969323 ggaacctaaatcattgacaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaatccgcagg 40969255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 50383978 - 50383919
Alignment:
Q  220 atccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| |||| |||| ||||    
T  50383978 atccttggcaaaatctgcaggaaatgtgtttcctgcaaaatttacgcaaacatccgcagg 50383919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 2576271 - 2576209
Alignment:
Q  211 ggaacctaaatccttggcaaaa-tctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||    
T  2576271 ggaacctacatccttggcaaaaatctgcaggaaatgtgtttcctgcggaatttatacaaaaat 2576209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 14044449 - 14044395
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  14044449 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 14044395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 41955329 - 41955263
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    ||||||||||||||||||||||| ||||| ||||||||  ||||||||||  ||||||||| |||||    
T  41955329 acctgggaacctaaatccttggcgaaatccgtaggaaacatgtttcctgctgaatttacaccaaaat 41955263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 2017367 - 2017420
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgata 165  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  2017367 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctacagata 2017420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 32006109 - 32006023
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||| ||  |||| ||||||||||||||       |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  32006109 gtggcggagtcatgaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 32006023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 2017454 - 2017522
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||| ||||||||||||||  ||||||   ||||||||| ||||||||||||||||| ||||    
T  2017454 ggaacctaaatacttggcaaaatctgcgggaaatacatttcctgcggaatttacacaaaaatccgcagg 2017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 9003659 - 9003607
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaa 270  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||    
T  9003659 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa 9003607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 9694191 - 9694139
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaa 270  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||    
T  9694191 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa 9694139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 43003075 - 43003160
Alignment:
Q  73 tggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||||||||||  |||| |||||||||||| |       |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  43003075 tggcggagccagaaattttatagagtctggacaaaaaatttattgcagaacgttacttctttcctgcgaataatttcacatttcct 43003160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 2521835 - 2521874
Alignment:
Q  119 aaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  2521835 aaaacgttacttccttcctgcgaataatttcacatttcct 2521874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 4728744 - 4728701
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  4728744 ttatcgcaaaacgttacttccttcctgcaaataatttcacattt 4728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 41972372 - 41972415
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  41972372 ttatcgcaaaacgttacttccttcctgcgaataatttcacattt 41972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 10715800 - 10715746
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  10715800 ttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 10715746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 10715842 - 10715796
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  10715842 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 10715796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 10929570 - 10929516
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  10929570 ttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 10929516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 10929612 - 10929566
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  10929612 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 10929566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 50100056 - 50100010
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  50100056 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 50100010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 4728693 - 4728648
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  4728693 ataatttcacatttcctacagatatatctttcctgcggaacctaaa 4728648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 11826985 - 11827026
Alignment:
Q  119 aaaacgttacttccttcctgctaataatttcacatttcctac 160  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  11826985 aaaatgttacttccttcctgcgaataatttcacatttcctac 11827026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 40969359 - 40969314
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  40969359 ataatttcacatttcctacggatatatctttcctgcggaacctaaa 40969314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 9003741 - 9003694
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttccta 159  Q
    |||| |||||| |||||||||||| ||| |||||||||||||||||||    
T  9003741 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttccta 9003694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 32006027 - 32005980
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcgga 180  Q
    ||||||| ||||| |||||||||||||| |||||||||||| ||||||    
T  32006027 ttcctgcaaataaattcacatttcctacggatatatctttcctgcgga 32005980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 2576398 - 2576315
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    ||||||||||||| |||| |||| |||||||||       |||| |||||||||||||||||| |||| | |||||||| ||||    
T  2576398 gtggcggagccaagaattttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgcgattaatttcatattt 2576315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 4552329 - 4552275
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  4552329 ttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 4552275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 50384058 - 50384024
Alignment:
Q  114 attgcaaaacgttacttccttcctgctaataattt 148  Q
    |||||||||||||||||||||||||| ||||||||    
T  50384058 attgcaaaacgttacttccttcctgcgaataattt 50384024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 2017418 - 2017463
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  2017418 ataaattcacatttcctacggatatatctttcctgcggaacctaaa 2017463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 14044550 - 14044464
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| |||||||| |||||       |||| |||||| ||||| |||||||||  ||||||||||||||||||    
T  14044550 gtggcggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttcct 14044464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 72 - 279
Target Start/End: Complemental strand, 17249556 - 17249349
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||||||| ||  |||| ||||||||||||||       |||| |||||||||||||| |||||||| |||||||||||||||||| | ||||||||||    
T  17249556 gtggcggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctgcggatatatctt 17249457  T
Q  172 tcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaa 271  Q
    |  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | ||||||||||||||| | ||||||||||||||    
T  17249456 taatgcggatcctaaaatcctaaggtattacctcacctgagaacctaaatccttggcaaaatctacaagaaatgtgtttcctgtggaatttacacaaaaa 17249357  T
Q  272 tccacagg 279  Q
    ||||||||    
T  17249356 tccacagg 17249349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 17148976 - 17148811
Alignment:
Q  118 caaaacgttacttccttcctgctaataatttcacatttcctaccgatatatc----tttcgtgcggatcctaaaatcctaaggtattacctcacctggga 213  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||  ||    |||| ||||||||||||||||||| |||||| ||||||||||||    
T  17148976 caaaacgttacttccttcctgcgaataatttcacatttcctgcagataattccacatttcctgcggatcctaaaatcctatggtattccctcacctggga 17148877  T
Q  214 acctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  17148876 acctaaatcctt-gcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggt 17148811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 12000691 - 12000563
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtagga 241  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||    
T  12000691 ataatttcacatttcctgcggatatatctttcctgcggatcctaaaatcctaaggtattacctcacctagggacctatatccttggcaaaatctgcagga 12000592  T
Q  242 aatgtgtttcctgcgaaatttacacaaaa 270  Q
    ||||||||||||||| |||||||||||||    
T  12000591 aatgtgtttcctgcggaatttacacaaaa 12000563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 304063 - 304198
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaa 232  Q
    |||||||  ||||||||||||||||| | |||||||||||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||    
T  304063 ttcctgcagataatttcacatttcctgcggatatatctttcctgcggatcctaaaatcttatggtgttacctcacatgggaacctaaatccttggcaaaa 304162  T
Q  233 tctgtaggaaatgtgtttcctgcgaaatttacacaa 268  Q
    |||| | |||||||||||||||||||||||||||||    
T  304163 tctgcaagaaatgtgtttcctgcgaaatttacacaa 304198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 15651384 - 15651247
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaa 232  Q
    |||||||  |||||||||||||||||   |||||||||||| | | |||||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  15651384 ttcctgcggataatttcacatttcctggggatatatctttcctactgatcctaaaatcctaaggcattacctcacctagggacctaaatccttggcaaaa 15651285  T
Q  233 tctgtaggaaatgtgtttcctgcgaaatttacacaaaa 270  Q
    |  | ||||||||||||||||||| |||||||||||||    
T  15651284 tacgcaggaaatgtgtttcctgcggaatttacacaaaa 15651247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 45444383 - 45444494
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||   |||||||||||| ||| ||||||||||||||| ||||||||||||||||     
T  45444383 ttattgcaaaacattacttccttcctgcgaataatttcacatttcctgtagatatatctttcttgcagatcctaaaatcctatggtattacctcacctgt 45444482  T
Q  212 gaacctaaatcc 223  Q
    ||||||||||||    
T  45444483 gaacctaaatcc 45444494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 25563067 - 25562971
Alignment:
Q  178 ggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| || |||||    
T  25563067 ggatcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaatctgcaggaaatgtatttcctgcggaatttacaaaacaatcc 25562971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 16220919 - 16221089
Alignment:
Q  73 tggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatcttt 172  Q
    |||||||||||  |||| ||||||| ||||||       |||| ||||||||||| |||||| ||||  |||||| ||||||| ||   |||||| ||||    
T  16220919 tggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttatttcctttctgcatataattgcacattttctgtggatataccttt 16221018  T
Q  173 cgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaa 243  Q
    | ||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | ||||||    
T  16221019 cctgcagatcctaaaatcctaaggtattatctcacctgggaacttaaatccttagcaaaatccgcaggaaa 16221089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 41010615 - 41010511
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    |||| |||||||||||||||| |  ||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||  |||||| |||||    
T  41010615 tttcctgcggatcctaaaatcttgtggtattacctcacatgggaacctaaatccttagtaaaatctgcaggaaatgtgtttcctgcagaatttatacaaa 41010516  T
Q  270 aatcc 274  Q
    |||||    
T  41010515 aatcc 41010511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 6799902 - 6799970
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  6799902 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 6799970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 18299159 - 18299222
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  18299159 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 18299222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 33909325 - 33909419
Alignment:
Q  178 ggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||| ||||||||| | ||||||  ||||| |||||||||    
T  33909325 ggatcctaaaatcctatggtattacctcacctgagaacctaaatctttggaaaaatctgcaggaaatgtttctcctgcagaattttcacaaaaat 33909419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 13203866 - 13203798
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||    
T  13203866 ggaacctaaatccttggcaaaatctgcaggaaacgtgtttcctgcggaatttacacaaaaatccgcagg 13203798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 41114886 - 41114954
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  41114886 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacgaaaatccgcagg 41114954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 29257465 - 29257402
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29257465 ggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatcc 29257402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 22572717 - 22572778
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  22572717 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttacacaaaaat 22572778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 2475992 - 2475919
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatccta 185  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||| |||||| ||||    
T  2475992 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcgaatatatctttcctgcggaaccta 2475919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 22572651 - 22572726
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||||   ||||||||||| |||||| ||||||    
T  22572651 ttatcgcaaaacgttactttcttcctgcgaataatttcacatttcctatgaatatatctttcttgcggaacctaaa 22572726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 29257592 - 29257506
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||||||||||       |||| |||||||||||||||||| |||| ||||||||||||||||||    
T  29257592 gtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcct 29257506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 34756897 - 34756825
Alignment:
Q  124 gttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaagg 196  Q
    ||||||||||||||||  ||||||  ||||||||| | |||||| ||||| ||||||||||||||||||||||    
T  34756897 gttacttccttcctgcggataattgtacatttcctgcggatatacctttcctgcggatcctaaaatcctaagg 34756825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 41010698 - 41010652
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  41010698 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 41010652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 18299079 - 18299118
Alignment:
Q  119 aaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  18299079 aaaacgttacttccttcctgcgaataatttcacatttcct 18299118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 34756795 - 34756728
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatc 273  Q
    |||||||||||||||||||||||||||||   |||||| ||| ||||| || ||||||||| ||||||    
T  34756795 acctgggaacctaaatccttggcaaaatccacaggaaacgtgattcctacggaatttacaccaaaatc 34756728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 6799857 - 6799911
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  6799857 ttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 6799911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 18299114 - 18299168
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  18299114 ttcctgcagataatttcacatttcctacagatatatctttcttgcggaacctaaa 18299168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 41114799 - 41114845
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  41114799 ttatcgcaaaacgttacttccttcatgcgaataatttcacatttcct 41114845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 41114841 - 41114895
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  41114841 ttcctgcagataatttcacatttcctacggatatatctttcttgcggaacctaaa 41114895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 6799821 - 6799861
Alignment:
Q  118 caaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  6799821 caaaacgttagttccttcctgcgaataatttcacatttcct 6799861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 13654785 - 13654823
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctgtaggaaat 244  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  13654785 acctgggaacctaaatccttggcaaaatccgcaggaaat 13654823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 15429276 - 15429214
Alignment:
Q  212 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||||||||||| |||||||   ||||||  ||||||||||| ||||||||| |||||||    
T  15429276 gaacctaaatccttgacaaaatccacaggaaacatgtttcctgcggaatttacaccaaaatcc 15429214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 25563158 - 25563112
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||||||||||||||| |||| |||||||||| |||||||    
T  25563158 ttatcgcaaaacgttacttcctttctgcaaataatttcatatttcct 25563112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 13203902 - 13203857
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    ||||||||||||||||||| ||||| |||||| |||||| ||||||    
T  13203902 ataatttcacatttcctacggatatctctttcctgcggaacctaaa 13203857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 35531961 - 35531900
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaa 194  Q
    ||||||| |||| ||  ||||||||| | |||||| ||||| ||||||||||||||||||||    
T  35531961 ttcctgcgaatatttgaacatttcctgcggatataactttcctgcggatcctaaaatcctaa 35531900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 15429384 - 15429312
Alignment:
Q  124 gttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaagg 196  Q
    ||||||||||||||||  |||||| |||||||||| | |||||| ||||| || ||||  ||||||| |||||    
T  15429384 gttacttccttcctgccgataattgcacatttcctgcggatatacctttcctgtggatattaaaatcttaagg 15429312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 9527242 - 9527075
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||| |||||||||||||  |||||||| |||||||||||||||||||  ||||||||||||  | |||||||||||||||||| |||||||||||||||    
T  9527242 ttatcgcaaaacgttactgtcttcctgcgaataatttcacatttcctatggatatatctttctggaggatcctaaaatcctaagatattacctcacctgg 9527143  T
Q  212 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||| ||||    
T  9527142 gaacctaaatccttggcaaaatctgcaggagatgtgtttcctgtgaaatttacaccaaaatccgcagg 9527075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 274
Target Start/End: Complemental strand, 34459342 - 34459144
Alignment:
Q  76 cggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgt 175  Q
    ||||||||  |||| ||||||||||||||       ||||  |||||||||||||||||||  | |||||||||||||||||||| |||||||||||| |    
T  34459342 cggagccaggaattttatagagtctgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttcacatttcctacagatatatctttctt 34459243  T
Q  176 gcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| || || || ||||| |||||    
T  34459242 gcggatcctaaaatcctaaggtattacctcacctgagaacttaaatccttggcaaaatctgcaggaaatgtgtttcctacggaaattccacaacaatcc 34459144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 49898609 - 49898442
Alignment:
Q  76 cggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgt 175  Q
    ||||||||  |||||||||||||||||||       |||| |||||| ||||| |||||||||| ||||||||||||||||||   |||||||||||| |    
T  49898609 cggagccagaaattatatagagtctgggcaaaaaatttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcctgtggatatatctttctt 49898510  T
Q  176 gcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaa 243  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||    
T  49898509 gcggatcctaaaatcctaaggtattacctcacctagggacctaaatccttggcaaaatctgcaggaaa 49898442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 4642009 - 4642155
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaa 232  Q
    |||||||  ||||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  4642009 ttcctgcggataatttcatatttcctgcggatatatctttcctgcggatcctaaaatcctaaggtattacctcacctcgaaacctaaatccttgacaaaa 4642108  T
Q  233 tctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||| | ||||||| ||||||| |||||||||| |||||||| ||||    
T  4642109 tctgcaagaaatgtatttcctgtgaaatttacataaaaatccgcagg 4642155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 24646192 - 24646083
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||    
T  24646192 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatgtacacaaa 24646093  T
Q  270 aatccacagg 279  Q
    ||||||||||    
T  24646092 aatccacagg 24646083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 279
Target Start/End: Original strand, 6802014 - 6802185
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||| ||||||||||| ||||| | |||  |||||| |||||||||| | |||||| ||||| || ||||||||||||| ||||||||||||||||||||    
T  6802014 ttatcgcaaaacgttatttcctacatgcggataattgcacatttcctgcagatatacctttcctgaggatcctaaaatcgtaaggtattacctcacctgg 6802113  T
Q  212 gaacctaaatccttggcaaaatc----tgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||     | ||||||||||||||||| | |||||||| |||||||| ||||    
T  6802114 gaacctaaatccttggcaaaatccgcaggcaggaaatgtgtttcctgtggaatttacagaaaaatccgcagg 6802185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 24745551 - 24745441
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    |||| ||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||| || |||||||||||||||  ||||||||||||    
T  24745551 tttcctgcggatcctaaaatcctagggtattacctcaccttaaaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcagaatttacacaaa 24745452  T
Q  270 aatccacaggt 280  Q
    || ||||||||    
T  24745451 aaaccacaggt 24745441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 6331784 - 6331721
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6331784 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaaaatcc 6331721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 31844531 - 31844646
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||||||||||  |||| ||||||||||||||       |||| |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  31844531 gtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctacggatatatctt 31844630  T
Q  172 tcgtgcggatcctaaa 187  Q
    || |||||| ||||||    
T  31844631 tcctgcggaacctaaa 31844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 33468861 - 33468976
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  33468861 gtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacagatatatctt 33468960  T
Q  172 tcgtgcggatcctaaa 187  Q
    || |||||| ||||||    
T  33468961 tcctgcggaacctaaa 33468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 27584029 - 27584098
Alignment:
Q  210 gggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  27584029 gggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 27584098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 31844637 - 31844699
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatc 273  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  31844637 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 31844699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 14727428 - 14727359
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||    
T  14727428 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggt 14727359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 25011553 - 25011621
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||    
T  25011553 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttacacaaaaatccgcagg 25011621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 6331850 - 6331775
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||| ||||||    
T  6331850 ttatcgcaaaacgttacttccttccttcaaataatttcacatttcctacggatatatctttcctgcggaacctaaa 6331775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 27460794 - 27460731
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  27460794 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttccttcggaatttacacaaaaatcc 27460731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 48940419 - 48940496
Alignment:
Q  197 tattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||||||||||  || ||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||    
T  48940419 tattacctcacctgaaaagctaaatccttgacaaaatctgcatgaaatgtgtttcctgcggaatttacacaaaaatcc 48940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 8239457 - 8239382
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| |||||||||||||||||||||   |||||||||||||||||||| |||||||||||| |||||| ||||||    
T  8239457 ttatcgcaaaacgttacttccttcctatgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 8239382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 37154007 - 37154075
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||||||   ||||||||| ||||||||||||||||| ||||    
T  37154007 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcagg 37154075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 44305510 - 44305442
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||||||   ||||||||| ||||||||||||||||| ||||    
T  44305510 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcagg 44305442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 14727555 - 14727469
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  14727555 gtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 14727469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 8239391 - 8239320
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaa--atgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| |||||  || | ||||||||| ||||||||||||||||| |||||    
T  8239391 ggaacctaaatccttggcaaaatctgcaggaaatatatatttcctgcggaatttacacaaaaatccgcaggt 8239320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 25007561 - 25007494
Alignment:
Q  212 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||||| |||||||   |||| |||| ||||||||||||||||| ||||    
T  25007561 gaacctaaatccttggcaaaatctgcaggaaatacatttcttgcggaatttacacaaaaatccgcagg 25007494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 4641972 - 4642013
Alignment:
Q  117 gcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  4641972 gcaaaacgttacttccttcctgcgaataatttcacatttcct 4642013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 25007689 - 25007603
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  25007689 gtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 25007603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 44305637 - 44305551
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  44305637 gtggcggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcct 44305551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 37153881 - 37153966
Alignment:
Q  73 tggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  37153881 tggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 37153966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 44238875 - 44238935
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaa 271  Q
    |||||||||||||||||||||||||  | ||||||||||||||||  |||||||| |||||    
T  44238875 ggaacctaaatccttggcaaaatctacaagaaatgtgtttcctgcagaatttacaaaaaaa 44238935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 4774197 - 4774113
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttc 156  Q
    ||||||||||||  |||| ||||||||||||||       |||| |||||| ||||||| |||||||| ||||||||||||||||    
T  4774197 gtggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttc 4774113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 4163546 - 4163481
Alignment:
Q  167 atctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaat 233  Q
    ||||||| || ||||| |||||| ||||||||||| ||||||| | |||||||||||||||||||||    
T  4163546 atctttcatgtggatcataaaattctaaggtattatctcacct-gaaacctaaatccttggcaaaat 4163481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 14727473 - 14727419
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  14727473 ttcctgcagataatttcacatttcctacagatatatctttcctgcggaacctaaa 14727419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 27460864 - 27460818
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  27460864 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 27460818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 1428354 - 1428392
Alignment:
Q  117 gcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  1428354 gcaaaacgttacttccttcctacgaataatttcacattt 1428392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 27583985 - 27584039
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| || ||| ||||||    
T  27583985 ttcctgcagataatttcacatttcctacggatatatctttcctggggaacctaaa 27584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 33468967 - 33469009
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcct 253  Q
    |||||||||||||||| |||||| || ||||||||||||||||    
T  33468967 ggaacctaaatccttgacaaaatttgcaggaaatgtgtttcct 33469009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 25011518 - 25011562
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  25011518 ataatttcacatttcctacggatatatctttc-tgcggaacctaaa 25011562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 33169333 - 33169370
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctgtaggaaa 243  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  33169333 acctgggaacctaaatccttggcaaaatccgcaggaaa 33169370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 1428405 - 1428445
Alignment:
Q  147 ttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||||||||| |||||||||||| |||||| ||||||    
T  1428405 ttcacatttcctacggatatatctttcctgcggaacctaaa 1428445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 1428436 - 1428468
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaa 243  Q
    |||||||||||||||||||||||||| ||||||    
T  1428436 ggaacctaaatccttggcaaaatctgcaggaaa 1428468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 4774085 - 4774037
Alignment:
Q  231 aatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||| ||||||||||||||||||| |||||||| ||| |||| ||||    
T  4774085 aatctgcaggaaatgtgtttcctgcggaatttacataaatatccgcagg 4774037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 46)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 72 - 272
Target Start/End: Complemental strand, 21069246 - 21069046
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    |||| |||||||  |||| ||||||||||||||       |||| ||||||||||| ||||||||||  |||||||||||||||||| | ||||||||||    
T  21069246 gtggtggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttatttccttcctggaaataatttcacatttcctgcagatatatctt 21069147  T
Q  172 tcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaa 271  Q
    || || |||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||| ||| ||||||||||    
T  21069146 tcctgtggatcctaaaatcctatggtataacctcacctaggaacctaaatctttggcaaaatctgcaggaaatgtgtttcttgcggaatatacacaaaaa 21069047  T
Q  272 t 272  Q
    |    
T  21069046 t 21069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 15504092 - 15503946
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaa 232  Q
    |||||||  ||||||||||||||||| | ||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  15504092 ttcctgcagataatttcacatttcctgcggatatatctttcccgcggatcctaaaatcctatggtattacctcatctgggaacctaaatccttggcaaaa 15503993  T
Q  233 tctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||| ||||||||||||||||||  ||||||||||||||||| ||||    
T  15503992 tctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcagg 15503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 274
Target Start/End: Complemental strand, 767483 - 767317
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgata-tatc---tttcgtgcggatcctaaaatcctaaggtattacctcac 207  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||| || | |||| | ||   |||| ||| |||||||||||||||||||||||||||||    
T  767483 ttattgcaaaacgttactttcttcctgcgaataatttctcattttctgcggataatttcacatttcctgcagatcctaaaatcctaaggtattacctcac 767384  T
Q  208 ctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  767383 ctgggaatctaaatccttggcaaaacctgtaggaaatgtgtttcctgcggaatttatacaaaaatcc 767317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 16667455 - 16667568
Alignment:
Q  167 atctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacac 266  Q
    ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  16667455 atctttcttgcggatcctaaaatcctatggtattacctcacatgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacac 16667554  T
Q  267 aaaaatccacaggt 280  Q
    |||||||| |||||    
T  16667555 aaaaatccgcaggt 16667568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 17192606 - 17192738
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtagga 241  Q
    |||||||||||||| || |  ||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  17192606 ataatttcacattttctgcgaatatatctttcctgcggatcctaaaatccaatggtattacctcatctgggaacctaaatccttgacaaaatctgcagga 17192705  T
Q  242 aatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||| ||||||||| |||| ||||||||||||    
T  17192706 aatgtatttcctgcggaattgacacaaaaatcc 17192738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 13942683 - 13942821
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatc---tttcgtgcggatcctaaaatcctaaggtattacctcacc 208  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||   ||||  ||   |||| ||||||||||||||||||||||||||||||||||    
T  13942683 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtggataattcacatttcctgcggatcctaaaatcctaaggtattacctcacc 13942782  T
Q  209 tgggaacctaaatccttggcaaaatctgtaggaaatgtg 247  Q
    ||  || ||||||||||||||||||||| ||||||||||    
T  13942783 tgataatctaaatccttggcaaaatctgcaggaaatgtg 13942821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 112 - 280
Target Start/End: Original strand, 12267313 - 12267484
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatc---tttcgtgcggatcctaaaatcctaaggtattacctcacc 208  Q
    |||| ||||||||||||||||||||||  ||||||||||||||| || | ||||  ||   |||| ||||||||||||||||||| ||||||||||||||    
T  12267313 ttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggataattcacatttcctgcggatcctaaaatcctatggtattacctcacc 12267412  T
Q  209 tgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |  ||| |||||| | |||||||||||  |||||||||||||| |||| |||||||| |||||||| |||||    
T  12267413 tacgaatctaaattcgtggcaaaatctacaggaaatgtgtttcttgcggaatttacataaaaatccgcaggt 12267484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 33007111 - 33006996
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||||||||||  |||| ||||||||||||||       |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  33007111 gtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctt 33007012  T
Q  172 tcgtgcggatcctaaa 187  Q
    || |||||| ||||||    
T  33007011 tcctgcggaacctaaa 33006996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 8214576 - 8214701
Alignment:
Q  119 aaaacgttacttccttcctgctaataatttcacatttc-ctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacct 217  Q
    |||| ||||| | |||||||| |||||||||| ||||  || | |||||||||||| |||||||||||||||||||| ||||||||||||||  ||||||    
T  8214576 aaaatgttacgtacttcctgcgaataatttcatatttgtctgcggatatatctttcctgcggatcctaaaatcctaaagtattacctcacctaagaacct 8214675  T
Q  218 aaatccttggcaaaatctgtaggaaa 243  Q
    ||||||||| ||||||||| ||||||    
T  8214676 aaatccttgacaaaatctgcaggaaa 8214701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 274
Target Start/End: Original strand, 36234485 - 36234651
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgata-tatc---tttcgtgcggatcctaaaatcctaaggtattacctcac 207  Q
    |||| |||||| |||||||||||| ||| |||||||||||||||| | | |||| | ||   |||| |||||||||||||||  || ||||| |||||||    
T  36234485 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttcttgcagataatttcacatttcctgcggatcctaaaatgttatggtatcacctcac 36234584  T
Q  208 ctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    || ||||| |||| |||||| |||||||| |||||||| |||||||||  |||||||| ||||||||    
T  36234585 ctaggaacttaaacccttggtaaaatctgcaggaaatgcgtttcctgctgaatttacataaaaatcc 36234651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 30249063 - 30249000
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  30249063 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 30249000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 34846465 - 34846402
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  34846465 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttactgcggaatttacacaaaaatcc 34846402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 34846531 - 34846456
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||    
T  34846531 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttcatgcggaacctaaa 34846456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 35469001 - 35468938
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  35469001 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 35468938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 6900910 - 6900800
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaa 232  Q
    |||||||  ||||||||||||||| | | ||||||||||||  |||||||||||||||||||  ||||| || | ||||||||||||||||||| |||||    
T  6900910 ttcctgcggataatttcacatttcttgcggatatatctttcccgcggatcctaaaatcctaaaatattatctaatctgggaacctaaatccttgacaaaa 6900811  T
Q  233 tctgtaggaaa 243  Q
    |||| ||||||    
T  6900810 tctgcaggaaa 6900800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 33007005 - 33006936
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||    
T  33007005 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaaaatccgcaggt 33006936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 15675411 - 15675342
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||    
T  15675411 ggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggt 15675342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 16567894 - 16567847
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttaca 265  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16567894 aaatcctaggcaaaatctgtaggaaatgtgtttcctgcgaaatttaca 16567847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 2476590 - 2476504
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||||||||||| ||||||       |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  2476590 gtggcggagccagaaattatatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2476504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 14832701 - 14832787
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||||||||||       |||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  14832701 gtggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 14832787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 12317956 - 12318012
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaattt 262  Q
    |||||||||||||||||||| ||||||||  |||||||| |||||||||||||||||    
T  12317956 acctgggaacctaaatccttagcaaaatccataggaaatttgtttcctgcgaaattt 12318012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 34444064 - 34443996
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||||||||  |||| |||| |||||| |||||||||| ||||    
T  34444064 ggaacctaaatccttggcaaaatctgcaggaaatgcatttcttgcggaatttagacaaaaatccgcagg 34443996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 39605784 - 39605856
Alignment:
Q  124 gttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaagg 196  Q
    |||||||| ||| |||  |||||| |||||||||| | |||||||||||| ||||||||||||||||||||||    
T  39605784 gttacttcattcatgcggataattgcacatttcctgcggatatatctttcctgcggatcctaaaatcctaagg 39605856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 7162096 - 7162158
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||| ||||||||||| ||||||||||||||||| | |||||||| |||||||| |||||    
T  7162096 aaatcctaggcaaaatctgcaggaaatgtgtttcctgtggaatttacataaaaatcctcaggt 7162158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 15675498 - 15675452
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  15675498 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 15675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 37552099 - 37552053
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  37552099 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 37654929 - 37654883
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  37654929 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37654883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 43228655 - 43228717
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||| |||| |||||    
T  43228655 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaacatccgcaggt 43228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 7161974 - 7162060
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||| ||||||       |||| |||||| |||||||||||||||| ||||||||||||||||||    
T  7161974 gtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttcct 7162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 1672377 - 1672460
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    ||||||||||||  |||| ||||||| ||||||       |||| |||||| |||||||||||||||| |||||||||||||||    
T  1672377 gtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 1672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 7159609 - 7159675
Alignment:
Q  213 aacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||| |||||||||||| | |||||| |||||||||||| ||| ||||| |||||| |||||    
T  7159609 aacctaaattcttggcaaaatccgcaggaaacgtgtttcctgcggaatgtacaccaaaatcaacagg 7159675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 32953680 - 32953734
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    ||||||| ||||||||||| |||||||||||||||| || |||||||| ||||||    
T  32953680 aaatcctaggcaaaatctgcaggaaatgtgtttcctacggaatttacataaaaat 32953734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 34444151 - 34444105
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  34444151 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 34444105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 35469088 - 35469042
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||    
T  35469088 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 35469042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 30249099 - 30249054
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  30249099 ataatttcacatttcctacggatatatctttcctgcggaacctaaa 30249054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 13695228 - 13695156
Alignment:
Q  124 gttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaagg 196  Q
    |||||||||||||||| | ||||| |||||||||| | | ||||  |||| |||||||||||||||| |||||    
T  13695228 gttacttccttcctgcaattaattgcacatttcctgcgggtatacttttcttgcggatcctaaaatcgtaagg 13695156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 14832783 - 14832830
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcgga 180  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||||    
T  14832783 ttcctgcagataatttcacatttcctacggatatatctttcctgcgga 14832830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 2476508 - 2476454
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  2476508 ttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 2476454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 6900952 - 6900906
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||||||| ||| ||||||||||||||||||    
T  6900952 ttatcgcaaaatgttacttccttcatgcgaataatttcacatttcct 6900906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 13695126 - 13695096
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctg 236  Q
    |||||||||||||||||||||||||||||||    
T  13695126 acctgggaacctaaatccttggcaaaatctg 13695096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 16567976 - 16567930
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||||||||||  ||||||||||||||||||    
T  16567976 ttatcgcaaaatgttacttccttcctgggaataatttcacatttcct 16567930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 32953598 - 32953644
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||||||||| | ||||||||||||||||||    
T  32953598 ttatcgcaaaatgttacttccttcctacgaataatttcacatttcct 32953644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 34444109 - 34444055
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  34444109 ttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 34444055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 35469046 - 35468992
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||||||||||||| |||| |||||||||||| |||||| ||||||    
T  35469046 ttcctgcagataatttcacattttctacggatatatctttcctgcggaacctaaa 35468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 42989605 - 42989571
Alignment:
Q  238 aggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    ||||||||||||||||||| |||||||||||||||    
T  42989605 aggaaatgtgtttcctgcggaatttacacaaaaat 42989571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 9738571 - 9738499
Alignment:
Q  124 gttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaagg 196  Q
    |||||||||||||| |  |||||| || |||| || | |||||| || || ||||||||||||||||||||||    
T  9738571 gttacttccttcctacggataattacatattttctgcggatatacctatcatgcggatcctaaaatcctaagg 9738499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 272
Target Start/End: Original strand, 33179073 - 33179202
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtagga 241  Q
    |||||||||||||| || | |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  33179073 ataatttcacattttctgcggatatatctttcctgcg-atcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaatctgcagga 33179171  T
Q  242 aatgtgtttcctgcgaaatttacacaaaaat 272  Q
    ||||||||||||||| |||||||||||||||    
T  33179172 aatgtgtttcctgcggaatttacacaaaaat 33179202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 272
Target Start/End: Original strand, 41218285 - 41218449
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgata----tatctttcgtgcggatcctaaaatcctaaggtattacctcac 207  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| | ||||    ||  |||| |||||||||||||||||||||||||||||||||    
T  41218285 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattttacatttcctgcggatcctaaaatcctaaggtattacctcac 41218384  T
Q  208 ctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
     || |||||||||| |||||||||||| | ||||||||||||||||||| |||||| ||||||||    
T  41218385 atgagaacctaaattcttggcaaaatcggcaggaaatgtgtttcctgcggaatttagacaaaaat 41218449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 53068416 - 53068278
Alignment:
Q  141 aataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtagg 240  Q
    ||||||||||||||| || | ||||||| |||  |||| |||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||    
T  53068416 aataatttcacattttctgcggatatatttttactgcgaatcctaaaatcctaaggtattatctcacctaggaacctaaattcttggcaaaatctgcagg 53068317  T
Q  241 aaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||| | ||||||||||||||||| ||||    
T  53068316 aaatgtgtttcctgtggaatttacacaaaaatccgcagg 53068278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 26370932 - 26371047
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||||||||||  |||| ||||||||||||||       |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  26370932 gtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctt 26371031  T
Q  172 tcgtgcggatcctaaa 187  Q
    || |||||| ||||||    
T  26371032 tcctgcggaacctaaa 26371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 37516859 - 37516739
Alignment:
Q  65 atgagccgtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgat 164  Q
    |||||| ||||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||||| |||||||||||||||||||| |||    
T  37516859 atgagcagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 37516760  T
Q  165 atatctttcgtgcggatccta 185  Q
    ||||||||| |||||| ||||    
T  37516759 atatctttcctgcggaaccta 37516739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 26371038 - 26371107
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  26371038 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggt 26371107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 41358590 - 41358670
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgttt 250  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||    
T  41358590 tttcctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatcattggcaaaatccgcaggaaatgtgttt 41358670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 7501060 - 7500997
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  7501060 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaacatcc 7500997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 53652001 - 53651934
Alignment:
Q  212 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||||||| ||||    
T  53652001 gaacctaaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttacacaaaaatccgcagg 53651934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 37516746 - 37516677
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||| |||||    
T  37516746 ggaacctagatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaattccgcaggt 37516677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 44047688 - 44047620
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||||||   ||||||||| ||||||||||||||||| ||||    
T  44047688 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcagg 44047620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 25391775 - 25391850
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| ||||||| ||||||||||| | | |||||||||||||||||||| |||||||||||| |||||| ||||||    
T  25391775 ttatcgcaaaacattacttccttcttacgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 25391850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 47511628 - 47511729
Alignment:
Q  178 ggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccaca 277  Q
    ||||||||||||| ||||||||||  ||| | || ||| |||||| || |||||||| | |||||||||||||||| | ||||||| |||||||||| ||    
T  47511628 ggatcctaaaatcttaaggtattatttcatcaggaaacttaaatctttagcaaaatccgcaggaaatgtgtttccttcaaaatttatacaaaaatccgca 47511727  T
Q  278 gg 279  Q
    ||    
T  47511728 gg 47511729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 53987961 - 53987900
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||    
T  53987961 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcagg 53987900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 28311381 - 28311313
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||  |||||||   ||||||||| ||||||||||||||||| ||||    
T  28311381 ggaacctaaatccttggcaaaatctacaggaaatacatttcctgcggaatttacacaaaaatccgcagg 28311313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 38239555 - 38239491
Alignment:
Q  213 aacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccaca 277  Q
    |||||||||||||||||||||| | || |||||||||||||||  ||||||||| ||||||||||    
T  38239555 aacctaaatccttggcaaaatccgcagaaaatgtgtttcctgcagaatttacactaaaatccaca 38239491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 35077321 - 35077267
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  35077321 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 35077267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 53988022 - 53987976
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  53988022 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 53987976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 28311508 - 28311422
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||||||||||       |||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  28311508 gtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctacgaataatttcacatttcct 28311422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 14461169 - 14461101
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| |||| ||   ||||||||| |||||||| |||||||| ||||    
T  14461169 ggaacctaaatccttggcaaaatctgcaggacatacatttcctgcggaatttacataaaaatccgcagg 14461101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 26278460 - 26278404
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||||| ||||||||||| |||||||||||||||| || |||||||| ||||||||    
T  26278460 aaatcctaggcaaaatctgcaggaaatgtgtttcctccggaatttacataaaaatcc 26278404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 36870025 - 36869966
Alignment:
Q  209 tgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaa 268  Q
    |||||||||||||||||| |||||||  ||||||| | |||||||||| |||||||||||    
T  36870025 tgggaacctaaatccttgacaaaatccttaggaaacgggtttcctgcggaatttacacaa 36869966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 497456 - 497414
Alignment:
Q  208 ctgggaacctaaatccttggcaaaatctgtaggaaatgtgttt 250  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  497456 ctgggaacctaaatccttagcaaaatccgtaggaaatgtgttt 497414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 7501105 - 7501051
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  7501105 ttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 7501051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 7501147 - 7501101
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||    
T  7501147 ttatcgcaaaacgttacttacttcctgcgaataatttcacatttcct 7501101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 9600447 - 9600386
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||  |||||||||| ||||||||||||||||||  |||||||| |||||||| ||||    
T  9600447 aaatcctaagcaaaatctgcaggaaatgtgtttcctgcagaatttacataaaaatccgcagg 9600386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 33178983 - 33179065
Alignment:
Q  73 tggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    |||||||| ||  |||| ||||||||||||||       |||| ||||||||||||||| ||||||| |||||||||||||||    
T  33178983 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattt 33179065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 25391841 - 25391909
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||| || | |||||   |||| |||| ||||||||||||||||| ||||    
T  25391841 ggaacctaaatccttggcaaaatttgcaagaaatacatttcttgcggaatttacacaaaaatccgcagg 25391909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 43447663 - 43447620
Alignment:
Q  208 ctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttc 251  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||    
T  43447663 ctgggaagctaaatccttggcaaaatctgcaggaaacgtgtttc 43447620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 14461214 - 14461160
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  14461214 ttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 14461160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 43700165 - 43700219
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||||||||||||||| || |||||||||||| |||||| ||||||    
T  43700165 ttcctgcagataatttcacatttccaacggatatatctttcctgcggaacctaaa 43700219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 44047733 - 44047679
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  44047733 ttcctgcagataaattcacatttcctacggatatatctttcttgcggaacctaaa 44047679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 44047775 - 44047729
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  44047775 ttatcgcaaaacgttacttctttcctacaaataatttcacatttcct 44047729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 12909968 - 12909923
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  12909968 ataaattcacatttcctacggatatatctttcctgcggaacctaaa 12909923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 14461296 - 14461210
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||| ||||||       ||||  |||||||||||||||||||| | |||||||| |||||||||    
T  14461296 gtggcggagccaggaattttatagagcctgggcaaaaaatttatcacaaaacgttacttccttcctacgaataattttacatttcct 14461210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 43700128 - 43700169
Alignment:
Q  117 gcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||||| || |||| ||||||||||||||||||    
T  43700128 gcaaaacgttacttcttttctgcgaataatttcacatttcct 43700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 26278521 - 26278473
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctac 160  Q
    |||| |||||| | |||||||||| ||| ||||||||||||||||||||    
T  26278521 ttatcgcaaaatgatacttccttcttgcgaataatttcacatttcctac 26278473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 43447763 - 43447695
Alignment:
Q  128 cttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaagg 196  Q
    ||||||| ||||  ||||||| |||||| ||   |||||||||||  ||||||||||||||||||||||    
T  43447763 cttcctttctgcggataattttacattttctgtggatatatcttttatgcggatcctaaaatcctaagg 43447695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 43700210 - 43700242
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaa 243  Q
    |||||||||||||||||||||||||| ||||||    
T  43700210 ggaacctaaatccttggcaaaatctgcaggaaa 43700242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 2836139 - 2836280
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaa 232  Q
    |||||||  |||||||||||||||||  |||||||  |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  2836139 ttcctgcagataatttcacatttcctgtcgatatacttttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatccttgacaaaa 2836238  T
Q  233 tctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    |||| ||||||||| ||||||||| ||||||||| |||||||    
T  2836239 tctgcaggaaatgtatttcctgcggaatttacacgaaaatcc 2836280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 339448 - 339366
Alignment:
Q  197 tattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  339448 tattacctcacctgggaacctaaatccttggtaaaatctgcaggaaatgtatttcctacggaatttacacaaaaatccacagg 339366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 2941321 - 2941252
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  2941321 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacactaaaatccgcaggt 2941252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 1781039 - 1781107
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  1781039 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttacacaaaaatccacagg 1781107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 1780933 - 1781048
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctt 171  Q
    ||||| ||||||  |||| ||||||||||||||       |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  1780933 gtggcagagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctt 1781032  T
Q  172 tcgtgcggatcctaaa 187  Q
    |  |||||| ||||||    
T  1781033 ttatgcggaacctaaa 1781048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 23663776 - 23663844
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  23663776 ggaacataaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 23663844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 9696154 - 9696092
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatc 273  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  9696154 ggaacctaaatccttggcaaaatctgcaggaaatatgtttcctgcggaatttacacaaaaatc 9696092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 9046932 - 9047001
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||    
T  9046932 ggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatctacacaaaaatctacaggt 9047001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 10397809 - 10397877
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||| ||||    
T  10397809 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcctgcggaatttacacaacaatccgcagg 10397877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 34249030 - 34249098
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||    
T  34249030 ggaacctaaacccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcagg 34249098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 34188979 - 34188856
Alignment:
Q  117 gcaaaacgttacttccttcctgctaataatttcacatttcctaccgata-tatc---tttcgtgcggatcctaaaatcctaaggtattacctcacctggg 212  Q
    |||||||||||| ||  || ||| |||||||||||||||||| | |||| | ||   |||| |||||||||||||||||||||||||||| ||||||| |    
T  34188979 gcaaaacgttacctctctcttgcgaataatttcacatttcctgcggataatttcacatttcctgcggatcctaaaatcctaaggtattacttcacctgag 34188880  T
Q  213 aacctaaatccttggcaaaatctg 236  Q
    || ||||||| |||| ||||||||    
T  34188879 aatctaaatcattggtaaaatctg 34188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 15122142 - 15122073
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||  |||||| ||| |||||| |||||    
T  15122142 ggaacgtaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttagacacaaatccgcaggt 15122073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 15529045 - 15528976
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||||||||||||||||| |||||||   ||||||||| |||||||||||| |||| |||||    
T  15529045 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaacatccgcaggt 15528976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 31200138 - 31200199
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacc 203  Q
    ||||||||||||||||| | |||||||||| | ||||||| |||||||||||||||||||||    
T  31200138 ataatttcacatttcctgcagatatatcttacctgcggattctaaaatcctaaggtattacc 31200199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 9696276 - 9696195
Alignment:
Q  77 ggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||||||  |||| ||||||||||||||       |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9696276 ggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 9696195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 10397699 - 10397784
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcc 157  Q
    |||||||| |||  |||| ||||||||||||||       |||| ||||||||||||||||||||||| |||||||||||||||||    
T  10397699 gtggcggaaccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcc 10397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 31188313 - 31188354
Alignment:
Q  162 gatatatctttcgtgcggatcctaaaatcctaaggtattacc 203  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  31188313 gatatatctttcctgcggatcctaaaatcctaaggtattacc 31188354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 14938934 - 14938989
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatc 273  Q
    |||||||  |||||||||| ||||||||||||||||||| |||||||| |||||||    
T  14938934 aaatcctaagcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatc 14938989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 2836097 - 2836143
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  2836097 ttattacaagacgttacttccttcctgcgaataatttcacatttcct 2836143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 2941366 - 2941312
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  2941366 ttcctgcagataatttcacatttcctacggatatatctttcatgcggaacctaaa 2941312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 2941408 - 2941362
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  2941408 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2941362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 2960858 - 2960812
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  2960858 ttattgcaaaatgttacttccttcttgcgaataatttcacatttcct 2960812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 9696199 - 9696145
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  9696199 ttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 9696145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 23663689 - 23663735
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  23663689 ttatcgcaaaacgttacttcattcctgcgaataatttcacatttcct 23663735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 34248943 - 34248989
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||    
T  34248943 ttatcgcaaaacgttacttccttcctgcggataatttcacatttcct 34248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 31188242 - 31188295
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgata 165  Q
    |||| ||||||||||||||||||||||  ||||||||||||||| |||| ||||    
T  31188242 ttatcgcaaaacgttacttccttcctgtgaataatttcacattttctacggata 31188295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 31200094 - 31200130
Alignment:
Q  119 aaaacgttacttccttcctgctaataatttcacattt 155  Q
    ||||||||||||||||||||| |||||||||||||||    
T  31200094 aaaacgttacttccttcctgcgaataatttcacattt 31200130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 28614334 - 28614377
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    |||| |||||| |||||||||||||||| |||||||||||||||    
T  28614334 ttatcgcaaaatgttacttccttcctgcgaataatttcacattt 28614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 339524 - 339478
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||||    
T  339524 ttatcgcaaaatgttacttccttcctgcaattaatttcacatttcct 339478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 9046887 - 9046941
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  ||||||||||||||||||| ||||||| |||| |||||| ||||||    
T  9046887 ttcctgcagataatttcacatttcctacagatatatatttcttgcggaacctaaa 9046941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 15529090 - 15529036
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  15529090 ttcctgcagataaattcacatttcctacagatatatctttcctgcggaacctaaa 15529036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 2960776 - 2960715
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||| ||||||||  | ||||||||||||| |||||||||||||| || ||||| ||||    
T  2960776 aaatcctgggcaaaattagcaggaaatgtgttttctgcgaaatttacataataatccgcagg 2960715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 13243233 - 13243133
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  13243233 tttcttgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctacaggaaatgtgtttcctgcggaatttacacaaa 13243134  T
Q  270 a 270  Q
    |    
T  13243133 a 13243133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 39431610 - 39431748
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtagga 241  Q
    ||||||||||||||| | | |||||||||||| ||||| ||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| | ||    
T  39431610 ataatttcacatttcatgcggatatatctttcttgcgggtccgaaaatcctatggtattacctcacctaggaacctaaatctttggcaaaatctgcacga 39431709  T
Q  242 aatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    |||||||||||| || ||||||||||||| ||| |||||    
T  39431710 aatgtgtttcctacggaatttacacaaaactccgcaggt 39431748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 31500743 - 31500902
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||||||||||  ||||||||||| | | |||||||| |||||||||||  |||||||||||   ||||||||||||||||||||||||||||||||| |    
T  31500743 ttattgcaaaatattacttccttcatacgaataattttacatttcctacgtatatatctttccaacggatcctaaaatcctaaggtattacctcaccttg 31500842  T
Q  212 g------aacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttaca 265  Q
    |      ||| |||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  31500843 gaatctaaacataaatccttggcaaaatccgtaggaaatgtgtttcctgcagaatttaca 31500902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 34282873 - 34282977
Alignment:
Q  170 tttcgtgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaa 269  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||| ||    
T  34282873 tttcctgcggatcctaaaatcctatggtattacctcacctcggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacactaa 34282972  T
Q  270 aatcc 274  Q
    |||||    
T  34282973 aatcc 34282977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 24965131 - 24965063
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  24965131 ggaacctaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 24965063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 28928158 - 28928089
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtagg-aaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||| ||||    
T  28928158 ggaacctaaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttacacaaaactccgcagg 28928089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 36406506 - 36406575
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||| |||| |||||    
T  36406506 ggaacctcaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaatatccgcaggt 36406575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 21138070 - 21138143
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    ||||||||||||||||||||||||||||  | |||||| ||||||| ||||||||||||||  |||||| ||||    
T  21138070 acctgggaacctaaatccttggcaaaattcgcaggaaacgtgtttcatgcgaaatttacacccaaatccgcagg 21138143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 36406379 - 36406463
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttc 156  Q
    ||||||||||||  |||| ||||||| ||||||       |||| ||||||||||||||||||||||| ||||||||||||||||    
T  36406379 gtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 36406463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 24965197 - 24965122
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||| ||||||| |||||| ||| |||| |||||||||||||||||| |  ||||||||||| |||||| ||||||    
T  24965197 ttatcgcaaaaccttactttctttctgcgaataatttcacatttcctgcaaatatatctttcctgcggaacctaaa 24965122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 34282790 - 34282836
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  34282790 ttatcgcacaacgttacttccttcctgcgaataatttcacatttcct 34282836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 27321882 - 27321935
Alignment:
Q  226 ggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||| || ||||||||||||||||||| |||||||| |||||||| ||||    
T  27321882 ggcaaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatccgcagg 27321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 28928194 - 28928149
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  28928194 ataatttcacatttcctacagatatatctttcctgcggaacctaaa 28928149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 27321792 - 27321835
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacattt 155  Q
    |||| |||||| |||||||||||||||| |||||||||||||||    
T  27321792 ttatcgcaaaatgttacttccttcctgcgaataatttcacattt 27321835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 3383949 - 3383995
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||||| | ||||||||||| ||||||    
T  3383949 ttatcgcaaaacgttacttccttcctacgaataatttcacgtttcct 3383995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 3383991 - 3384045
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  3383991 ttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 3384045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 35384295 - 35384341
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||||| |||||||||||| | ||||||||||||||||||    
T  35384295 ttatcgcaaaacggtacttccttcctacgaataatttcacatttcct 35384341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 36406470 - 36406508
Alignment:
Q  142 ataatttcacatttcctaccgatatatctttcgtgcgga 180  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  36406470 ataatttcacatttcctacggatatatctttcctgcgga 36406508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 38214911 - 38214865
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| |||||| |||||||| ||||||| ||||||||||||||||||    
T  38214911 ttatcgcaaaatgttacttcattcctgcgaataatttcacatttcct 38214865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 8968440 - 8968412
Alignment:
Q  206 acctgggaacctaaatccttggcaaaatc 234  Q
    |||||||||||||||||||||||||||||    
T  8968440 acctgggaacctaaatccttggcaaaatc 8968412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 21137969 - 21138040
Alignment:
Q  124 gttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaagg 196  Q
    |||||||||||| ||   |||||| |||||||||||| |||||| ||||| |||| ||||||||||| |||||    
T  21137969 gttacttccttcatgtggataattgcacatttcctac-gatatacctttcctgcgaatcctaaaatcataagg 21138040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 28928238 - 28928202
Alignment:
Q  119 aaaacgttacttccttcctgctaataatttcacattt 155  Q
    |||| |||||||||||||||| |||||||||||||||    
T  28928238 aaaaagttacttccttcctgcgaataatttcacattt 28928202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 272
Target Start/End: Original strand, 112135 - 112292
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaaatcctaaggtattacctcacctgg 211  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||| |   |||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  112135 ttattgcaaaacattacttccttcctgcaaataatttcacgtttcatgtggatatatctttcctgcggatcctaaaatcctatggtattacctcatctgg 112234  T
Q  212 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    |||||||||| ||| ||| |||||| || ||||||||   ||| | |||||||||||||||    
T  112235 gaacctaaattcttagcagaatctgcagaaaatgtgt---ctgtggaatttacacaaaaat 112292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 109283 - 109377
Alignment:
Q  178 ggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaat 272  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||| || | |||||||| ||||| |||||||||||||||    
T  109283 ggatcctaaaatcctatggtattatctcacctgggaacctaaattcttagcaaaatctgcagaacatgtgttttctgcggaatttacacaaaaat 109377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 109234 - 109280
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  109234 ttattgcaaaacattacttccttcctgcgaataatttcacgtttcct 109280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 1794 - 1731
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatcc 274  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1794 ggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatcc 1731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 1921 - 1835
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    ||||||||||||  |||| ||||||||||||||       |||| |||||||||||||||||| |||| ||||||||||||||||||    
T  1921 gtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcct 1835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 7009 - 6941
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||||||||  |||||| || ||||||||||| ||||| ||||    
T  7009 ggaacctaaatccttggcaaaatctgcaggaaatgcatttccttcggaatttacacaataatccgcagg 6941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 11622 - 11554
Alignment:
Q  211 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacagg 279  Q
    |||||||||||||||||||||||||| ||||||||  ||| ||||| ||||||||||| ||||| ||||    
T  11622 ggaacctaaatccttggcaaaatctgcaggaaatgcattttctgcggaatttacacaataatccgcagg 11554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 11709 - 11663
Alignment:
Q  112 ttattgcaaaacgttacttccttcctgctaataatttcacatttcct 158  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  11709 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 11663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 7054 - 7000
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||| |||| |||||||||||||| |||||||| ||| |||||| ||||||    
T  7054 ttcctgctgataaattcacatttcctacggatatatccttcctgcggaacctaaa 7000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 11667 - 11613
Alignment:
Q  133 ttcctgctaataatttcacatttcctaccgatatatctttcgtgcggatcctaaa 187  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||| ||||||    
T  11667 ttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 11613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 4303 - 4215
Alignment:
Q  72 gtggcggagccaataattatatagagtctgggcnnnnnnnttattgcaaaacgttacttccttcctgctaataatttcacatttcctac 160  Q
    ||||||||||||  |||| ||||||| ||||||       |||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  4303 gtggcggagccataaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctac 4215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 4202 - 4140
Alignment:
Q  218 aaatccttggcaaaatctgtaggaaatgtgtttcctgcgaaatttacacaaaaatccacaggt 280  Q
    ||||||| ||||||||||| |||||||||||||||| || |||||||| ||| |||| |||||    
T  4202 aaatcctgggcaaaatctgcaggaaatgtgtttcctacggaatttacataaacatccgcaggt 4140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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