View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17920_high_2 (Length: 232)

Name: NF17920_high_2
Description: NF17920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17920_high_2
NF17920_high_2
[»] chr1 (5 HSPs)
chr1 (1-212)||(29061144-29061355)
chr1 (1-71)||(39332586-39332658)
chr1 (167-211)||(49491903-49491947)
chr1 (82-211)||(3374356-3374485)
chr1 (134-211)||(39332387-39332464)
[»] chr8 (4 HSPs)
chr8 (71-162)||(3322112-3322203)
chr8 (71-120)||(28225640-28225689)
chr8 (160-209)||(36206436-36206485)
chr8 (143-211)||(27786786-27786854)
[»] chr2 (4 HSPs)
chr2 (143-211)||(18693154-18693222)
chr2 (134-211)||(14296248-14296325)
chr2 (142-211)||(18811703-18811772)
chr2 (171-211)||(31092369-31092409)
[»] scaffold0531 (1 HSPs)
scaffold0531 (143-211)||(10312-10380)
[»] chr4 (3 HSPs)
chr4 (143-211)||(16593768-16593836)
chr4 (143-210)||(19852538-19852605)
chr4 (77-211)||(37050054-37050188)
[»] chr3 (2 HSPs)
chr3 (71-123)||(31163017-31163069)
chr3 (142-211)||(51524920-51524989)
[»] chr7 (1 HSPs)
chr7 (172-211)||(19407871-19407910)
[»] chr5 (1 HSPs)
chr5 (1-60)||(15188238-15188299)
[»] chr6 (1 HSPs)
chr6 (13-71)||(25168130-25168190)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29061355 - 29061144
Alignment:
Q  1 agacatgagatacctgaaccaatacaacagagtcatagtggagaacctatgaaaagaaaatccaaatctatgctacaagactaccatctctatgaaaatt 100  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  29061355 agacatgagatacctaaaccaatccaagagagtcatagtggagaacctatgaaaagaaaatccaaatctgtgctacaagactaccatctctatgaaagtt 29061256  T
Q  101 tgtacaaaatgattgctatttctcactaaacttttgcaataaaaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggtt 200  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29061255 tgtacaaaatgattgttatttctcgttaaacttttgcaataaaaccaactactttgtagctgtcaaggcaactttggaggtacccttttaggcacgggtt 29061156  T
Q  201 ctcattccggcc 212  Q
    |||||| |||||    
T  29061155 ctcattgcggcc 29061144  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39332658 - 39332586
Alignment:
Q  1 agacatgagatacctgaaccaatacaacagagtcata--gtggagaacctatgaaaagaaaatccaaatctat 71  Q
    ||||| ||||| |||||| ||||||||||||||||||  ||||| ||| ||||||||||||||||| ||||||    
T  39332658 agacaggagatgcctgaatcaatacaacagagtcatatagtggataacttatgaaaagaaaatccagatctat 39332586  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 49491903 - 49491947
Alignment:
Q  167 ggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  49491903 ggcaactttggaggtacccttttgggcacgggtcctcattccggc 49491947  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 3374485 - 3374356
Alignment:
Q  82 taccatctctatgaaaatttgtacaaaatgattgctatttctcactaaacttttgcaataaaaccaactactttgtagctgtcagggcaactttggaggt 181  Q
    |||| ||||||||||| || | | |||||||||| |||| ||  |||| ||  |||||| |||||||||| | |||||||  || |||| |||||||| |    
T  3374485 taccctctctatgaaagttggaagaaaatgattgatattactagctaatctaatgcaattaaaccaactattctgtagcttccaaggcagctttggagct 3374386  T
Q  182 acccttttaggcacgggttctcattccggc 211  Q
    |||||||| |||||  || |||||||||||    
T  3374385 acccttttgggcacatgtcctcattccggc 3374356  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 39332464 - 39332387
Alignment:
Q  134 ttgcaataaaaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||||||||| || | |||||||| || | ||  |||| |||||||||||| ||||||||| |||||| ||||    
T  39332464 ttgcaataaaaccaattattctgtagctgccaagtcatttttgaaggtacccttttgggcacgggtcctcatttcggc 39332387  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 3322203 - 3322112
Alignment:
Q  71 tgctacaagactaccatctctatgaaaatttgtacaaaatgattgctatttctcactaaacttttgcaataaaaccaactactttgtagctg 162  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |  |||  |||||| |||||||||||||| | ||||||||    
T  3322203 tgctacaagactaccatctctatgaaagtttgtacaatatgattgatatttgtagctattcttttgtaataaaaccaactattctgtagctg 3322112  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 28225640 - 28225689
Alignment:
Q  71 tgctacaagactaccatctctatgaaaatttgtacaaaatgattgctatt 120  Q
    ||||||||||||||| ||||||||||| ||||||| |||| |||| ||||    
T  28225640 tgctacaagactaccctctctatgaaagtttgtactaaattattgatatt 28225689  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 36206436 - 36206485
Alignment:
Q  160 ctgtcagggcaactttggaggtacccttttaggcacgggttctcattccg 209  Q
    |||||| |||||||||||||| || |||||||||||| || |||||||||    
T  36206436 ctgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccg 36206485  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 27786786 - 27786854
Alignment:
Q  143 aaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||| |||||| |||||| || | ||||||||| ||| |||| ||||||| | |||||||||||    
T  27786786 aaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggc 27786854  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 18693222 - 18693154
Alignment:
Q  143 aaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||| |||||| |||||| | |||||||||||| |||||||||||||| ||| |||||||||||    
T  18693222 aaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggc 18693154  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 14296248 - 14296325
Alignment:
Q  134 ttgcaataaaaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    |||||||  ||||||||| | |||| ||| || |||| |||||||||||||||||| | |||| || |||||||||||    
T  14296248 ttgcaattgaaccaactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggc 14296325  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 18811703 - 18811772
Alignment:
Q  142 aaaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    |||||||||| | |||| |||||| || | |||||||||  ||||||| ||||||||| |||||||||||    
T  18811703 aaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggc 18811772  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 31092409 - 31092369
Alignment:
Q  171 actttggaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||||||||||||| |||||| || |||||||||||    
T  31092409 actttggaggtacccttttgggcacgagtcctcattccggc 31092369  T

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Target: scaffold0531 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 10380 - 10312
Alignment:
Q  143 aaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||| | |||||||| || | || |||||||| ||| ||||||||||||||| |||||||||||    
T  10380 aaccaactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggc 10312  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 16593768 - 16593836
Alignment:
Q  143 aaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||| | |||||||| || | ||||||||| | ||| ||||| |||||||||||||||||||||    
T  16593768 aaccaactattatgtagctgccaagacaactttggcgttactcttttgggcacgggttctcattccggc 16593836  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 19852605 - 19852538
Alignment:
Q  143 aaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccgg 210  Q
    ||||||||| | || ||||| || | ||||||||||| ||| ||||| ||||||||||||||||||||    
T  19852605 aaccaactattatgaagctgccaagacaactttggagttactcttttgggcacgggttctcattccgg 19852538  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 37050188 - 37050054
Alignment:
Q  77 aagactaccatctctatgaaaatttgtacaaaatgattgctatttctcactaaacttttgcaataaaaccaactactttgtagctgtcagggcaactttg 176  Q
    ||||||||  |||||||||||||||| ||||||  |||| |||| |    ||  || |||||||  ||||||||| |||||| || |||  ||  |||||    
T  37050188 aagactactctctctatgaaaatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattttgtatctctcaaagcggctttg 37050089  T
Q  177 gaggtacccttttaggcacgggttctcattccggc 211  Q
    ||||||||||||| |||||| || |||||||||||    
T  37050088 gaggtacccttttgggcacgagtcctcattccggc 37050054  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 31163017 - 31163069
Alignment:
Q  71 tgctacaagactaccatctctatgaaaatttgtacaaaatgattgctatttct 123  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||||||    
T  31163017 tgctacaagactaccttctttatgaaagttggtacaaaatgattgatatttct 31163069  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 51524989 - 51524920
Alignment:
Q  142 aaaccaactactttgtagctgtcagggcaactttggaggtacccttttaggcacgggttctcattccggc 211  Q
    |||||||||| |||| | |||||| || | |||||||||  ||||||| ||||||||| |||||||||||    
T  51524989 aaaccaactattttgcatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggc 51524920  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 19407871 - 19407910
Alignment:
Q  172 ctttggaggtacccttttaggcacgggttctcattccggc 211  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  19407871 ctttggaggtacccttttgggcacgggtcctcattccggc 19407910  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15188299 - 15188238
Alignment:
Q  1 agacatgagatacctgaaccaatacaacagagt--catagtggagaacctatgaaaagaaaa 60  Q
    ||||| ||||| ||||||| |||||||||||||  ||||||| |||||||||||| ||||||    
T  15188299 agacaagagatgcctgaacgaatacaacagagtcacatagtgaagaacctatgaagagaaaa 15188238  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 25168190 - 25168130
Alignment:
Q  13 cctgaaccaatacaacagagt--catagtggagaacctatgaaaagaaaatccaaatctat 71  Q
    |||||||||||||||||||||  ||||||| | |||||||||||||| || | ||||||||    
T  25168190 cctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactaaatctat 25168130  T

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