View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17920_low_1 (Length: 545)
Name: NF17920_low_1
Description: NF17920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17920_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 58 - 459
Target Start/End: Original strand, 41984488 - 41984888
Alignment:
| Q |
58 |
ttgaaggtgacaaggaaagatagtgttagataattgggttgattcagaaaatatgaagcagaataccatagaatttattttactacaataggatattcct |
157 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41984488 |
ttgaaggtgacaaggaaagatagtgctagataattgggttgattcagaaaatatgaagcagaataccatagaatttattttactacaataggatattcct |
41984587 |
T |
|
| Q |
158 |
gtagttgtaaactattaaactgcttaaattactttttatacaagatggctttatcagttatcacccttgatcaattgagagaaggaagaaaaagagttgt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41984588 |
gtagttgtaaactattaaactgcttaaattactttt-atacaagatggccttatcagctatcacccttgatcaattgagagaaggaagaaaaagagttgt |
41984686 |
T |
|
| Q |
258 |
ccaggttctcattcctaactatacatataatcacatatttcctataatttgcaataaaacataaataacgtatatatttttgctgtgtttttgtatttca |
357 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41984687 |
ccaggttctcattcctaactaaacatataatcacatatttcctataatttgcaataaaacataaataacgtatatatttttgctgtgtttttgtatttca |
41984786 |
T |
|
| Q |
358 |
ctatcgattggacaatcataatcaacacggcatttcaataaaccaaaggttcaaaccaattatgtgcggtatattctcatggaaccatgtctttattaga |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
41984787 |
ctatcgattggacaatcataatcaacacggcatttcaataaaccaaaggttcaaaccaattatgtgtggtatattatcatggaaccatgtctttattaga |
41984886 |
T |
|
| Q |
458 |
ta |
459 |
Q |
| |
|
|| |
|
|
| T |
41984887 |
ta |
41984888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 41986658 - 41986995
Alignment:
| Q |
21 |
gatgctggccagatactggtttaacaattttctgctcttgaaggtgacaaggaaagatagtgt------------------tagataattgggttgattc |
102 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||| |||| |
|
|
| T |
41986658 |
gatgatggccagatactggtttaacaattttatgctctttaaggtgacaaggaaagatactgtcacacaattggatactgttagataattgggttcattc |
41986757 |
T |
|
| Q |
103 |
agaaaatatgaagcagaataccatag--aatttattttactacaataggatattcctgtagttgtaa----------actattaaactgcttaaattact |
190 |
Q |
| |
|
||||||||||||||||| || ||| || |||||| | |||||||| ||||| ||||||||||| || |||||||| |||| ||||| |
|
|
| T |
41986758 |
agaaaatatgaagcagagaacaatatctaaattatttgatcacaataggctattcatgtagttgtaattggctttaaaccattaaactcattaagttact |
41986857 |
T |
|
| Q |
191 |
ttttatacaagatggctttatcagttatcacccttgatcaattgagagaaggaagaaaaagagttgtccaggttctcattcctaactatacatataatca |
290 |
Q |
| |
|
| ||||| |||||| | |||||| ||||||||||||||| |||||||| |||| ||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
41986858 |
tgttatagaagatgaccttatca-------cccttgatcaattgaaagaaggaataaaa-gagttttc-aggttctcattcctaaccatacatataatca |
41986948 |
T |
|
| Q |
291 |
catatttcctataatttgcaataaaacataaataacgtatatatttt |
337 |
Q |
| |
|
|| |||||||||||||| ||||| |||| |||||| ||||| |||| |
|
|
| T |
41986949 |
cacatttcctataatttccaatagaacaataataacatatatgtttt |
41986995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 534
Target Start/End: Original strand, 41984958 - 41985020
Alignment:
| Q |
472 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatggcacaggttc |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41984958 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatgccacaggttc |
41985020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 41987517 - 41987571
Alignment:
| Q |
472 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatggc |
526 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||| |||||||||| || |||||| |
|
|
| T |
41987517 |
ctgcataagctgtgtcaattgcaagttgcaactgcactttcctcagtcctatggc |
41987571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University