View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17920_low_2 (Length: 308)

Name: NF17920_low_2
Description: NF17920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17920_low_2
NF17920_low_2
[»] chr4 (12 HSPs)
chr4 (15-291)||(18554940-18555213)
chr4 (20-292)||(15871172-15871456)
chr4 (20-292)||(15888748-15889032)
chr4 (15-291)||(13267610-13267896)
chr4 (15-291)||(13234846-13235123)
chr4 (22-291)||(13559589-13559845)
chr4 (20-291)||(12230421-12230703)
chr4 (25-291)||(17419106-17419355)
chr4 (20-151)||(19727872-19728003)
chr4 (217-273)||(19727788-19727844)
chr4 (20-113)||(12249653-12249746)
chr4 (20-54)||(9886489-9886523)
[»] chr6 (3 HSPs)
chr6 (15-291)||(19545364-19545637)
chr6 (20-273)||(14746163-14746414)
chr6 (25-271)||(22395696-22395940)
[»] chr3 (13 HSPs)
chr3 (15-291)||(27868497-27868784)
chr3 (20-291)||(10302349-10302620)
chr3 (15-291)||(19186384-19186673)
chr3 (20-291)||(22161338-22161621)
chr3 (20-276)||(21976712-21976980)
chr3 (20-276)||(21999143-21999411)
chr3 (183-292)||(16358045-16358154)
chr3 (20-135)||(10340498-10340613)
chr3 (20-113)||(10340689-10340782)
chr3 (193-291)||(10340848-10340946)
chr3 (27-121)||(16999693-16999787)
chr3 (15-51)||(3264577-3264613)
chr3 (15-51)||(36528265-36528301)
[»] scaffold0094 (1 HSPs)
scaffold0094 (15-287)||(2723-2993)
[»] chr2 (4 HSPs)
chr2 (15-291)||(18985451-18985738)
chr2 (20-273)||(23908288-23908538)
chr2 (99-158)||(19445181-19445240)
chr2 (24-94)||(33408408-33408478)
[»] scaffold0290 (1 HSPs)
scaffold0290 (15-287)||(12075-12358)
[»] scaffold0385 (1 HSPs)
scaffold0385 (20-276)||(15740-16007)
[»] scaffold0408 (1 HSPs)
scaffold0408 (20-273)||(14599-14850)
[»] scaffold0118 (1 HSPs)
scaffold0118 (15-291)||(11557-11845)
[»] chr7 (7 HSPs)
chr7 (58-292)||(11800198-11800429)
chr7 (20-276)||(16068310-16068565)
chr7 (22-291)||(9693212-9693468)
chr7 (20-158)||(11800494-11800632)
chr7 (20-265)||(16379276-16379521)
chr7 (20-121)||(28756400-28756501)
chr7 (22-51)||(11310065-11310094)
[»] scaffold1043 (2 HSPs)
scaffold1043 (20-154)||(848-982)
scaffold1043 (217-276)||(764-823)
[»] scaffold0170 (1 HSPs)
scaffold0170 (20-273)||(17750-18001)
[»] scaffold0010 (2 HSPs)
scaffold0010 (20-150)||(142744-142874)
scaffold0010 (217-273)||(142903-142959)
[»] chr8 (3 HSPs)
chr8 (20-121)||(9798929-9799030)
chr8 (20-154)||(17861667-17861801)
chr8 (217-273)||(17861586-17861642)
[»] chr5 (9 HSPs)
chr5 (15-154)||(25791449-25791588)
chr5 (21-139)||(23908609-23908727)
chr5 (20-290)||(23908799-23909056)
chr5 (99-158)||(25581896-25581955)
chr5 (84-141)||(13938442-13938499)
chr5 (19-121)||(24144205-24144307)
chr5 (20-53)||(32948402-32948435)
chr5 (225-289)||(25581570-25581634)
chr5 (22-54)||(25582000-25582032)
[»] chr1 (3 HSPs)
chr1 (20-276)||(21496174-21496417)
chr1 (15-58)||(20761824-20761867)
chr1 (20-113)||(27318144-27318237)
[»] scaffold1405 (1 HSPs)
scaffold1405 (99-158)||(1392-1451)
[»] scaffold0364 (2 HSPs)
scaffold0364 (99-158)||(14059-14118)
scaffold0364 (100-141)||(13877-13918)
[»] scaffold0381 (1 HSPs)
scaffold0381 (20-54)||(12021-12055)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 18555213 - 18554940
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  18555213 acctatgtgtagtattttgatcatatcttgagttctacatgttggaatgaggtcaaacaaacaccaaattaaagctaacagtcatatctacaactttcaa 18555114  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgcgatttcacatctgcgatttagcattaaggg 214  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||   |||   |||||||||||||||||||||    
T  18555113 gaagacatcgaaacctaattcggaacagaaaagtcccagcttttgattttatttcgggtacagaaattgcagattc---tctgcgatttagcattaaggg 18555017  T
Q  215 acctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18555016 acctttcctaactccgttttcgaccctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 18554940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 15871456 - 15871172
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||| ||||||||| ||||||||| | | ||| ||||||||| || ||||||||||||||||||  | ||||||||||||| | |||||    
T  15871456 tgtgtagtattttgaccatatcttgtgttctagatattgaaatcaggtcaaaccaatgccaaattaaagctaacatgcatatctacaacttttatgaaga 15871357  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgat-tttatttcgggtacagaaatc-----------gcgatttcacatctgcgatttagca 207  Q
    || | ||| |||||||  |||| |||||| |||||||||  | ||| |||||| ||||||||||           |||||||  ||| |||||||||||     
T  15871356 caccaaaatctaattctcaacagaaaagtgccagtttttattgtttgtttcggttacagaaatcacagattttctgcgattttgcatgtgcgatttagcc 15871257  T
Q  208 ttaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcattg 292  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |  ||||||||||||    
T  15871256 ttaagggacctttcctaactccgttttcgaccctaaactcgccaaactcgaccctaatcttcactccatgactaccctatcattg 15871172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 15889032 - 15888748
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||| | ||||||||| ||||||||| | | ||| ||||||||| || ||||| ||||||||||||  | ||||||||||||||| |||||    
T  15889032 tgtgtagtattttaaccatatcttgtgttctagatattgaaatcaggtcaaaccaatgccaatttaaagctaacatgcatatctacaactttcatgaaga 15888933  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgat-tttatttcgggtacagaaatcgc-----------gatttcacatctgcgatttagca 207  Q
    || ||||| |||||||  |||| |||||| |||||||||  | ||| |||||| |||||||||| |           |||||| ||| |||||||||||     
T  15888932 caccgaaatctaattctcaacagaaaagtgccagtttttattgtttgtttcggttacagaaatcacagattttctgtgatttcgcatgtgcgatttagcc 15888833  T
Q  208 ttaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcattg 292  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |  ||||||||||||    
T  15888832 ttaagggacctttcctagctccgttttcgaccctaaactcgccaaactcgaccctaatcttcactccatgactaccctatcattg 15888748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 13267610 - 13267896
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| ||||||||||||||| ||||||||| |||| || ||| ||||||||||||||| || | | ||||||||  ||||  | || ||| ||||||||     
T  13267610 acctatgtgtagtattttgaccatatcttgtgttcaagttgttggaatgaggtcaaaccaacggccaattaaag--aacatgcatagctaaaactttcat 13267707  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatt-tcgggtacagaaatc-----------gcgatttcacatctgcgatt 202  Q
    | ||||||| |||||||||||  || | |||||| |||||||||  |||| || |||| |||| |||||           |||||||| ||| |||||||    
T  13267708 gcagacatcaaaacctaattctaaatataaaagtgccagtttttattttttttgtcggttacaaaaatcacagattttctgcgatttcgcatatgcgatt 13267807  T
Q  203 tagcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| |  |||||||||||    
T  13267808 tagccttaagggacctttcctaactccgttttcgaccctaaactcaccaaactcgaccctaatcttcactccatgactaccctatcatt 13267896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 13234846 - 13235123
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| ||||||||||||||||||||||| |||||||||| ||  |||| ||||||||||||  || |||||| ||||||| || ||| ||||| |||||     
T  13234846 acctctgtgtagtattttgatcatatctagagttctagacgttagaataaggtcaaacaaacacccaattaaggctaacattcatatatacaattttcat 13234945  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatc-gcgatttcacatctgcgatttagcattaagg 213  Q
    ||||||| | |||||||| |  | |||  |||||| |||| |||  |||| |||| | ||  |   || |||||||||||||| ||||||||| ||||||    
T  13234946 gaagacaccaaaacctaaatatgtacaggaaagtctcagtgtttatttttgtttcagttagcgttttctgcgatttcacatctacgatttagccttaagg 13235045  T
Q  214 gacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    ||  ||||||| || ||||||||| |||||||||||||||||  | ||||||||||||||||| |  |||||||||||    
T  13235046 gatttttcctaccttcgttttcgaccctaaactcgccaaacctcagcctaatcttcactccatgactaccctatcatt 13235123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 13559845 - 13559589
Alignment:
Q  22 tgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaagaca 121  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||  | |||||||||||| |||||  | ||||||||||||||| ||  |||    
T  13559845 tgtagtattttgatcatatctagagttttagatgttggaatgaggtcaaaccgacgccaaattaaagataacatacatatctacaactttcatgactaca 13559746  T
Q  122 tcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgcgatttcacatctgcgatttagcattaagggacctttc 221  Q
       || |||||||   |||| |||||| ||| |||||  |||| |||||| ||| ||||||             ||||||||||| || | |||| ||||    
T  13559745 caaaagcctaattataaacataaaagtaccattttttatttttgtttcggttaccgaaatc-------------tgcgatttagccttgaaggacttttc 13559659  T
Q  222 ctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||||||||||||| | ||||||||| ||||||||||  |||||||||||||||| || |||||||||||    
T  13559658 ctaactccgttttcaaccctaaactcaccaaacccgattctaatcttcactccatgattaccctatcatt 13559589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 12230421 - 12230703
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||| |||||||||||||||||||||  |||||| ||||||| ||   ||||||||| || ||| || ||||||||||||| | |||||    
T  12230421 tgtgtagtattttgaacatatcttgagttctagatgttagaatgacgtcaaaccaatttcaaattaaatctgacattcatatctacaactttgatgaaga 12230520  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgc-----------gatttcacatctgcgatttagcat 208  Q
    || | || |||||||| ||||  |||| ||||||||||   |||  ||| || |||| ||||| |           |||||   || ||||||||||| |    
T  12230521 caccaaatcctaattcagaaccgaaaattcccagttttgtttttgtttttggttacataaatcacatattttctgtgattttgtatgtgcgatttagcct 12230620  T
Q  209 taagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    ||||| ||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||| | ||||| || |||||||||||    
T  12230621 taaggaacctttcctaactccattttcgaccctaaacttgccaaactcgaccctaatctttaatccatgattaccctatcatt 12230703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 25 - 291
Target Start/End: Original strand, 17419106 - 17419355
Alignment:
Q  25 agtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaagacatcg 124  Q
    |||||||||||||||||||||||||||| | | || |||||||||||| || ||| |||||||||||||| || ||||||||||||||| ||||||| ||    
T  17419106 agtattttgatcatatcttgagttctagcttttgggatgaggtcaaaccaacgcccaattaaagctaacactcatatctacaactttcatgaagacaccg 17419205  T
Q  125 aaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgcgatttcacatctgcgatttagcattaagggacctttccta 224  Q
    || ||||| ||  |||| |||||||||||| |||  |||| |||            |||  ||||    |||||||||| || ||| |||||||||||||    
T  17419206 aatcctaactctcaacagaaaagtcccagtgtttatttttgttt------------tcg-aattt----tctgcgatttcgccttaggggacctttccta 17419288  T
Q  225 actccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    ||| ||||||||| |||||| ||||||||| |||||| |||||||||||| | || | |||||||||    
T  17419289 acttcgttttcgaccctaaattcgccaaactcgaccccaatcttcactccgtgattaacctatcatt 17419355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 19728003 - 19727872
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||| |||||| |||||||||||| | |||||||| ||| || || ||| |||||||||||| |  | ||||||||||||| | |||||    
T  19728003 tgtgtagtattttgaccatatcatgagttctagattttggaatgagatcagaccaacgcccaattaaagctaaaacgcatatctacaacttttatgaaga 19727904  T
Q  120 catcgaaacctaattcggaacaaaaaagtccc 151  Q
    || | || ||||||||||||||||||||||||    
T  19727903 cacccaatcctaattcggaacaaaaaagtccc 19727872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 19727844 - 19727788
Alignment:
Q  217 ctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactc 273  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||    
T  19727844 ctttcctaacttcgttttcgaccctaaactcgccaaactcgaccctaatcttcactc 19727788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 12249746 - 12249653
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttca 113  Q
    |||||| |||||| |||||||||  |||| |||||||   ||||  |||||||||||| ||||| ||||||||||  | |||||||||||||||    
T  12249746 tgtgtaatattttaatcatatctcaagttgtagatgtacaaatggagtcaaacaaaaggcaaatgaaagctaacatccatatctacaactttca 12249653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 9886489 - 9886523
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagat 54  Q
    |||||||||||||||||||||||||| ||||||||    
T  9886489 tgtgtagtattttgatcatatcttgatttctagat 9886523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 19545637 - 19545364
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||    
T  19545637 acctatgtgtagtattttgatcatatcttgagttctacatgttggaatgaggtcaaacaaacgccaaattaaagctaacagtcatatatacaactttgaa 19545538  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgcgatttcacatctgcgatttagcattaaggg 214  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||   |||   |||||||||||||||||||||    
T  19545537 gaagacatcgaaacctaattcggaacagaaaagtcccagcttttgattttatttcgggtacagaaattgcagattc---tctgcgatttagcattaaggg 19545441  T
Q  215 acctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545440 acctttcctaactccgttttcgaccctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 19545364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 14746163 - 14746414
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||||| ||||||||| | | |||||||||| || || || ||||||||| |||||    ||||||||||||||| |||||    
T  14746163 tgtgtagtattttgatcatatcttgtgttctagattttgaaatgaggtcataccaacgctaaattaaagataacacaaatatctacaactttcatgaaga 14746262  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatttt-atttcgggtacagaaatcgc-gatttcacatctgcgatttagcattaagggacc 217  Q
    ||  ||| |||||||| || || ||||||||||||||||  ||||  |||||  |||||||||||| |||||    ||||||||||  | ||| ||||||    
T  14746263 cactgaatcctaattctgagcagaaaagtcccagtttttatttttgttttcgattacagaaatcgcagattt----tctgcgatttcaccttaggggacc 14746358  T
Q  218 tttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactc 273  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  14746359 tttcctaacttcgttttcgatcctaaactcgccaaactcaaccctaatcttcactc 14746414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 271
Target Start/End: Complemental strand, 22395940 - 22395696
Alignment:
Q  25 agtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaagacatcg 124  Q
    |||||||||||||||| |||||||||| || | | |||||||| | |  || ||| |||||||||||| | || ||||||||||||||  ||||||| ||    
T  22395940 agtattttgatcatatgttgagttctaaattttgtaatgaggttagatcaacgcccaattaaagctaagactcatatctacaactttcctgaagacaacg 22395841  T
Q  125 aaacctaattcggaacaaaaaagtcccagtttttgatttt-atttcgggtacagaaatcgc-gatttcacatctgcgatttagcattaagggacctttcc 222  Q
    || ||||||||  |||| ||||| | ||||||||  ||||  |||||| |||| ||||||| |||||    |||||||||| |  ||| |||||||||||    
T  22395840 aatcctaattctcaacagaaaagcctcagtttttatttttcttttcggttacaaaaatcgcagattt----tctgcgatttcgtcttaggggacctttcc 22395745  T
Q  223 taactccgttttcgatcctaaactcgccaaacccgaccctaatcttcac 271  Q
    ||||| ||||||  | |||||||||  ||||| ||||||||||||||||    
T  22395744 taacttcgttttacaccctaaactcttcaaactcgaccctaatcttcac 22395696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 27868784 - 27868497
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||  || ||| |||||||||||||| || ||| ||||||||| |     
T  27868784 acctctgtgtagtattttgatcatatcttgagttctagatgttggaatgaggtaaaaataacgcccaattaaagctaacattcatatatacaacttttat 27868685  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgc-----------gatttcacatctgcgattt 203  Q
    ||||||| | ||||||||||| ||||| ||||||||||||||||  |||| || ||||||||||||| ||           |||||| ||||| ||||||    
T  27868684 gaagacaccaaaacctaattctgaacagaaaagtcccagtttttatttttgttccgggtacagaaatagccgattttctgtgatttcgcatctacgattt 27868585  T
Q  204 agcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||||||| | |||||||| |||||||||| |||| |||||||||    
T  27868584 agcattaagggacctttcctatatccgttttcgaccctaaactcgccaaactcaaccctaatattcactccataatcaacctatcatt 27868497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 10302349 - 10302620
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    |||| |||||||||||| ||||| |||||||||| || ||||||||||||||| || ||| ||||||| ||||||  | ||||||||||||||| ||| |    
T  10302349 tgtgaagtattttgatcgtatctagagttctagacgttggaatgaggtcaaaccaacgcccaattaaatctaacatgcatatctacaactttcatgaata 10302448  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatt-ttatttcgggtacagaaatc-gcgatttcacatctgcgatttagcattaagggacc 217  Q
    || | || |||||||  ||||| |||||| ||||||||  ||| || ||| || ||| |||||| |||||||| ||| ||||||||||| || |  |||     
T  10302449 caccaaagcctaattatgaacataaaagttccagtttt--attcttgttttggttaccgaaatctgcgatttcccatatgcgatttagccttgatagact 10302546  T
Q  218 tttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||||||||||||||||| | ||||||||||||||||  ||  |||||||||| ||||| || |||||||||||    
T  10302547 tttcctaactccgttttcaaccctaaactcgccaaacatgattctaatcttcaatccatgattaccctatcatt 10302620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 19186384 - 19186673
Alignment:
Q  15 acctgtgtgtagtattttg-atcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttca 113  Q
    |||| |||||||||||||  |||||||||||||||||||||||  ||||||||||| || ||  || |||||||| ||||| || || ||||||||||||    
T  19186384 acctatgtgtagtattttttatcatatcttgagttctagatgttagaatgaggtcacaccaactcccaattaaagataacattcatagctacaactttca 19186483  T
Q  114 agaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgatttta--tttcgggtacagaaatc-----------gcgatttcacatctgcga 200  Q
     ||||||| ||||| |||||||  |||  |||| | ||||| |||  ||||   |||||| ||||||||||           |||||||  ||| |||||    
T  19186484 tgaagacaccgaaatctaattctcaacctaaaattgccagtgtttattttttagtttcggttacagaaatcacagattttctgcgattttgcatgtgcga 19186583  T
Q  201 tttagcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||| |  |||||||||||    
T  19186584 tttagccttaagggacctttcctaactcc-ttttcgaccctaaactcgccaaactcgaccgtaatcttcactccatgactaccctatcatt 19186673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 22161338 - 22161621
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||| ||||||||||||||||||| | | ||| ||||||||| ||  || ||||||||||||||    || |||||||||||| |||||    
T  22161338 tgtgtagtattttgaccatatcttgagttctagatattgaaattaggtcaaaccaactcctaattaaagctaacatatatagctacaactttcatgaaga 22161437  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatt-ttatttcgggtacagaaatc-----------gcgatttcacatctgcgatttagca 207  Q
    || ||||| |||||||  || |  ||||| | |||||||  || || |||||| |||| |||||           |||||||| ||| |||||||||||     
T  22161438 caccgaaatctaattctcaaaattaaagtgctagtttttatttgttgtttcggttacataaatcacatattttctgcgatttcgcatgtgcgatttagcc 22161537  T
Q  208 ttaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||  | ||||||| |  |||||||||||    
T  22161538 ttaagggaccttttctaactccgttttcgaccctaaactcgccaaactcgaccctaatagttactccatgactaccctatcatt 22161621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 21976712 - 21976980
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||| ||||||||||||||||||| | | ||| ||||||||| ||  || ||||||||||||||    || |||||||||||| |||||    
T  21976712 tgtgtagtattttgaccatatcttgagttctagatattgaaattaggtcaaaccaactcctaattaaagctaacatatatagctacaactttcatgaaga 21976811  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatt-ttatttcgggtacagaaatc-----------gcgatttcacatctgcgatttagca 207  Q
    || ||||| |||||||  || |  ||||| | |||||||  || || |||||| |||| |||||           |||||||  ||| || ||||||||     
T  21976812 caccgaaatctaattctcaaaattaaagtgctagtttttatttgttgtttcggttacaaaaatcatagattttctgcgattttgcatgtgtgatttagcc 21976911  T
Q  208 ttaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccat 276  Q
    |||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||    
T  21976912 ttaagggacctttcctaactccgttttcaaccctaaactcgccaaactcgaccctaatatttactccat 21976980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 21999143 - 21999411
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||| ||||||||||||||||||| | | ||| ||||||||| ||  || ||||||||||||||    || |||||||||||| |||||    
T  21999143 tgtgtagtattttgaccatatcttgagttctagatattgaaattaggtcaaaccaactcctaattaaagctaacatatatagctacaactttcatgaaga 21999242  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatt-ttatttcgggtacagaaatc-----------gcgatttcacatctgcgatttagca 207  Q
    || ||||| |||||||  || |  ||||| | |||||||  || || |||||| |||| |||||           |||||||  ||| || ||||||||     
T  21999243 caccgaaatctaattctcaaaattaaagtgctagtttttatttgttgtttcggttacaaaaatcatagattttctgcgattttgcatgtgtgatttagcc 21999342  T
Q  208 ttaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccat 276  Q
    |||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||    
T  21999343 ttaagggacctttcctaactccgttttcaaccctaaactcgccaaactcgaccctaatatttactccat 21999411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 292
Target Start/End: Complemental strand, 16358154 - 16358045
Alignment:
Q  183 gcgatttcacatctgcgatttagcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcac 282  Q
    |||||||| ||| ||||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||||||| |  ||    
T  16358154 gcgatttcgcatgtgcgatttagcctcaagggacctttcctagctccgttttcgaccctaaactcgccaaattcgaccctaatcttcactccatgactac 16358055  T
Q  283 cctatcattg 292  Q
    ||||||||||    
T  16358054 cctatcattg 16358045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 10340498 - 10340613
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    |||| |||||||||||||||||| |||||||||| || ||||| |||||||||||| ||| |||||||||||||| || || ||||||||| |||||||     
T  10340498 tgtgaagtattttgatcatatctagagttctagacgttggaataaggtcaaacaaacgcccaattaaagctaacattcatagctacaacttgcaagaagg 10340597  T
Q  120 catcgaaacctaattc 135  Q
    || | |||||||||||    
T  10340598 caccaaaacctaattc 10340613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 10340689 - 10340782
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttca 113  Q
    ||||||||||||||||||||| | |||||||||| || ||||||||||||||| || | | ||||||| ||||||  | |||||||||||||||    
T  10340689 tgtgtagtattttgatcatatgtagagttctagacgttggaatgaggtcaaaccaacggccaattaaatctaacatgcatatctacaactttca 10340782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 10340848 - 10340946
Alignment:
Q  193 atctgcgatttagcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||||||||||||| || | |||| |||||||||||||||||| | |||||||||| |||||  ||  |||||||||||||||| || | |||||||||    
T  10340848 atctgcgatttagccttcatggacttttcctaactccgttttcaaccctaaactcgtcaaacatgattctaatcttcactccataattaacctatcatt 10340946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 16999787 - 16999693
Alignment:
Q  27 tattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaagaca 121  Q
    ||||||||||||| ||| |||| ||||||||  ||||| |||| || ||||  |||| |||| ||||| || ||||||||||||||| |||||||    
T  16999787 tattttgatcataacttaagttgtagatgtccaaatgaagtcataccaaaggaaaatgaaagataacattcatatctacaactttcatgaagaca 16999693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 3264613 - 3264577
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttcta 51  Q
    |||| |||||||||||||||||||| |||||||||||    
T  3264613 acctctgtgtagtattttgatcatagcttgagttcta 3264577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 36528265 - 36528301
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttcta 51  Q
    |||| |||||||||||||||||||| |||||||||||    
T  36528265 acctctgtgtagtattttgatcataacttgagttcta 36528301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 2993 - 2723
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| || ||||||||| ||| ||    
T  2993 acctatgtgtagtattttgatcatatcttgagttttagatgttggaatgaggtcaaacaaacgccaaattaaagctaacattcatatctacaaattttaa 2894  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgc-----------gatttcacatctgcgattt 203  Q
    | ||||||||||||||||   |||           ||||| |||  ||| ||||||||||||||||||||           |||||| ||||||||||||    
T  2893 gcagacatcgaaacctaag--gga-----------ccagtatttattttgatttcgggtacagaaatcgcagattttctgcgatttcgcatctgcgattt 2807  T
Q  204 agcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctat 287  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  2806 agcattaagggacctttcctaactccgttttcgaccctaaactcgccaaacccaacccgaatcttcactccatcatcaccctat 2723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 18985738 - 18985451
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| |||||||||||||||||||||||||| |||||||||| ||||||||| || |  || | | |||||||||||||| || |||||||||||||||     
T  18985738 acctctgtgtagtattttgatcatatcttgatttctagatgttggaatgaggacacattaacggccaattaaagctaacattcatatctacaactttcat 18985639  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgcg-----------atttcacatctgcgattt 203  Q
    ||||||| ||||||||| ||| | ||  |||||||||||||| |  |||| ||| || ||||||||||||            ||||| ||||||||||||    
T  18985638 gaagacaccgaaacctagttctgtacggaaaagtcccagtttgtatttttgttttggttacagaaatcgcagattatctgcaatttcgcatctgcgattt 18985539  T
Q  204 agcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||| |||||||||    
T  18985538 agtattaagggacctttcctaactccgttttcgaccctaaactcgccaaattcgaccctaatctgcactccatcatcaacctatcatt 18985451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 23908288 - 23908538
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||||||||||||||| | |||||| || |  |||||  || |||||||| ||||| || ||||||||||||||| |||||    
T  23908288 tgtgtagtattttgatcatatcttgagttctagattttggaatgtggccggacaaactcccaattaaagttaacactcatatctacaactttcatgaaga 23908387  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatttt-atttcgggtacagaaatcgc-gatttcacatctgcgatttagcattaagggacc 217  Q
    || | || ||||| |   |||| ||||  ||| || |||  ||||  |||||| |||| ||||| | |||||    |||||||||| || ||| ||||||    
T  23908388 caccaaatcctaactattaacataaaa-ccccggtgtttatttttgttttcggttacaaaaatcacagattt----tctgcgatttcgccttaggggacc 23908482  T
Q  218 tttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactc 273  Q
    |||||||||| || ||| || ||||||||| |||||| |||||||||| |||||||    
T  23908483 tttcctaacttcgcttttgaccctaaactcaccaaactcgaccctaatattcactc 23908538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 19445240 - 19445181
Alignment:
Q  99 tatctacaactttcaagaagacatcgaaacctaattcggaacaaaaaagtcccagttttt 158  Q
    ||||||||||||||| ||||||||  ||||||||||  ||||| ||||||||||||||||    
T  19445240 tatctacaactttcaggaagacataaaaacctaattatgaacagaaaagtcccagttttt 19445181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 33408408 - 33408478
Alignment:
Q  24 tagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaaca 94  Q
    ||||||||| ||||||||||||||||||||||||| |||   || |||| || ||| ||||||||||||||    
T  33408408 tagtattttaatcatatcttgagttctagatgtcgaaatatagtaaaaccaacgcccaattaaagctaaca 33408478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 12358 - 12075
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |  || ||| |||||||||||||| || |||||||||||||||     
T  12358 acctctgtgtagtattttgatcatatcttgatttctagatgttggaatgaggtcacattaacgcccaattaaagctaacattcatatctacaactttcat 12259  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgc-gattt----ca------catctgcgattt 203  Q
    ||||||| ||||||||| ||| | ||| |||||||||||||| |   ||| ||| ||||| ||| ||||| |||||    ||      ||||||||||||    
T  12258 gaagacaccgaaacctagttctgtacataaaagtcccagtttgtatatttgttttgggtatagatatcgcagattttctgcaattttgcatctgcgattt 12159  T
Q  204 agcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctat 287  Q
    || ||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  12158 agtattaaggaacctttcctaactccattttcgaccctaaactcgccaaactcgaccctaatctgcactccatcatcaacctat 12075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 15740 - 16007
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    |||||||||||| || ||||||||||||||||||| | | ||| ||||||||| || ||||||||||||||||||  | || |||||||||||| |||||    
T  15740 tgtgtagtatttggaccatatcttgagttctagatattgaaattaggtcaaaccaacgccaaattaaagctaacatacatagctacaactttcatgaaga 15839  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatc-----------gcgatttcacatctgcgatttagcat 208  Q
    || ||||| |||||||  |||| |||||| ||||||| |  |||| |||||| ||||||||||           |||||||| ||| ||||||||||| |    
T  15840 caccgaaatctaattctcaacagaaaagtgccagtttatttttttgtttcggttacagaaatcacagattttctgcgatttcgcatgtgcgatttagcct 15939  T
Q  209 taagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccat 276  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||| || ||||||| ||||||||||    
T  15940 taagggacctttcctaactctgttttcgaccctaaacttgccaaactcggccctaatattcactccat 16007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 14599 - 14850
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||||| ||||||||| | | |||||||||| || || || ||||||||| |||||    ||||||||||||||| |||||    
T  14599 tgtgtagtattttgatcatatcttgtgttctagattttgaaatgaggtcataccaacgctaaattaaagataacacaaatatctacaactttcatgaaga 14698  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatttt-atttcgggtacagaaatcgc-gatttcacatctgcgatttagcattaagggacc 217  Q
    ||  ||| |||||||| || || ||||||||||||||||  ||||  |||||  |||||||||||| |||||    ||||||||||  | ||| ||||||    
T  14699 cactgaatcctaattctgagcagaaaagtcccagtttttatttttgttttcgattacagaaatcgcagattt----tctgcgatttcaccttaggggacc 14794  T
Q  218 tttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactc 273  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  14795 tttcctaacttcgttttcgatcctaaactcgccaaactcaaccctaatcttcactc 14850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 11557 - 11845
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| ||||||||| ||||||||||||||||||||||||||  |||||||| |||||  ||  || |||||||||||||| |  || ||||||||||||     
T  11557 acctatgtgtagtaatttgatcatatcttgagttctagatgctggaatgagttcaaaacaactcccaattaaagctaacattaatagctacaactttcat 11656  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagtttttgatttta-tttcgggtacagaaatc-----------gcgatttcacatctgcgatt 202  Q
    |||||||  |||| |||||||  || | |||||| |||||||||  ||||  |||||| ||||||||||           |||||||| ||| |||||||    
T  11657 gaagacactgaaatctaattctcaatagaaaagtgccagtttttattttttgtttcggttacagaaatctcagatttgctgcgatttcgcatgtgcgatt 11756  T
Q  203 tagcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| |  |||||||||||    
T  11757 tagccttaagggacatttcctaactccgttttcgaccctaaactcaccaaactcgaccctaatcttcactccatgactaccctatcatt 11845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 58 - 292
Target Start/End: Complemental strand, 11800429 - 11800198
Alignment:
Q  58 ggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaagacatcgaaacctaattcggaacaaaaaagtcccagtttt 157  Q
    |||||||||| |||| ||  || ||||||| |||||| || ||  ||||||||||| ||||||| | ||||||||||||||||| ||| | |||||||||    
T  11800429 ggaatgaggtaaaactaattcccaattaaaactaacaatcatagatacaactttcatgaagacaccaaaacctaattcggaacataaaggacccagtttt 11800330  T
Q  158 tgatttta-tttcgggtacagaaatcgcg-atttcacatctgcgatttagcattaagggacctttcctaactccgttttcgatcctaaactcgccaaacc 255  Q
    |  ||||  |||||| ||||||||||||  ||||    ||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||     
T  11800329 tattttttgtttcggttacagaaatcgcatattt----tctgcgatttagccttaaag-acctttcctaactccgttttcgaccctaaactcgccaaact 11800235  T
Q  256 cgaccctaatcttcactccatcatcaccctatcattg 292  Q
    | ||||||||||||||||||| || ||||||||||||    
T  11800234 caaccctaatcttcactccatgattaccctatcattg 11800198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 16068565 - 16068310
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||||| ||||||||| |  ||||||||| | || || ||| |||||||| ||||| || ||||||||||||||| | |||    
T  16068565 tgtgtagtattttgatcatatcttgggttctagatttttgaatgaggttagaccaacgcccaattaaagataacactcatatctacaactttcatgcaga 16068466  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgatttt--atttcgggtacagaaatcgc-gatttcacatctgcgatttagcattaagggac 216  Q
    || | || ||||||||  |||| |||||||||||| ||| |||||   |||||| |||||||||| |  ||||    |||||||||| || |||  ||||    
T  16068465 caccaaatcctaattctaaacagaaaagtcccagtgtttcatttttgttttcggttacagaaatcacatattt----tctgcgatttcgccttataggac 16068370  T
Q  217 ctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccat 276  Q
    ||||||||||| ||||||||| |||||||||||||||| | ||||||| |||||||||||    
T  16068369 ctttcctaacttcgttttcgaccctaaactcgccaaactcaaccctaaccttcactccat 16068310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 9693468 - 9693212
Alignment:
Q  22 tgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaagaca 121  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||  | |||||||||||| |||||  | ||||||||||||||| ||  |||    
T  9693468 tgtagtattttgatcatatctagagttttagatgttggaatgaggtcaaaccgacgccaaattaaagataacatacatatctacaactttcatgactaca 9693369  T
Q  122 tcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgcgatttcacatctgcgatttagcattaagggacctttc 221  Q
       || |||||||   |||| |||||| ||| |||||  |||| |||||| ||| ||||||             ||||||||||| || | |||| ||||    
T  9693368 caaaagcctaattataaacataaaagtaccattttttatttttgtttcggttaccgaaatc-------------tgcgatttagccttgaaggacttttc 9693282  T
Q  222 ctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcatt 291  Q
    |||||||||||||| | ||||||||| ||||||||||  |||||||||||||||| || |||||||||||    
T  9693281 ctaactccgttttcaaccctaaactcaccaaacccgattctaatcttcactccatgattaccctatcatt 9693212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 11800632 - 11800494
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||| |||||| ||| || |||||||| |||||  || || |||||||  |||||| || ||  ||||||||||| |||||    
T  11800632 tgtgtagtattttgatcatatctagagttccagacgttggaatgagttcaaaacaacgctaaattaagtctaacattcatagatacaactttcatgaaga 11800533  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagttttt 158  Q
    ||   ||||||||||||||||| ||||| ||||||||||    
T  11800532 cactaaaacctaattcggaacataaaagacccagttttt 11800494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 16379521 - 16379276
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    |||||||||||||||||||||||  ||||||||| || ||||||||||||||| || ||| |||||| | ||||| || ||  |||||||||||  ||||    
T  16379521 tgtgtagtattttgatcatatctaaagttctagacgttggaatgaggtcaaaccaacgcctaattaacgataacattcatagatacaactttcataaaga 16379422  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgattt---tatttcgggtacagaaatcgc-gatttcacatctgcgatttagcattaaggga 215  Q
    || | |||| |||||||||||| ||| | |||| | |||  |||   | |||||| |||||||||| | |||||    | |||||||| || |||  |||    
T  16379421 caccaaaacttaattcggaacagaaaggacccaatatttagtttttgtttttcggttacagaaatcacagattt----tttgcgatttcgccttagagga 16379326  T
Q  216 cctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaat 265  Q
    |||| ||| |||||  |||||| |||||||||||||||| ||||||||||    
T  16379325 ccttccctgactccaatttcgaccctaaactcgccaaactcgaccctaat 16379276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 28756501 - 28756400
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||| ||||||| ||||| ||||| ||  ||| ||||||||| |||||||||| |||| ||||| |  ||||||||||||||| |||||    
T  28756501 tgtgtagtattttgaccatatctcgagttgtagatatccaaataaggtcaaaccaaagccaaatgaaagttaacattgatatctacaactttcatgaaga 28756402  T
Q  120 ca 121  Q
    ||    
T  28756401 ca 28756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 11310065 - 11310094
Alignment:
Q  22 tgtagtattttgatcatatcttgagttcta 51  Q
    ||||||||||||||||||||||||||||||    
T  11310065 tgtagtattttgatcatatcttgagttcta 11310094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 982 - 848
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||| || || ||| |||||||||||| |  | ||||||||||||||| |||||    
T  982 tgtgtagtattttgatcatatcttgagttctagatttcggaatgagatcagaccaacgcccaattaaagctaaaacacatatctacaactttcatgaaga 883  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagt 154  Q
    || | || |||||||| ||||| ||||||||||||    
T  882 caccaaatcctaattctgaacagaaaagtcccagt 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 823 - 764
Alignment:
Q  217 ctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccat 276  Q
    ||||||||||| |||||| || ||||||||||||||||  ||||||||||||||||||||    
T  823 ctttcctaacttcgtttttgaccctaaactcgccaaacttgaccctaatcttcactccat 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 17750 - 18001
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||||||||||||||| |   ||||||| || | ||| ||| || ||||||||||| || | |||||||| |||| |||||    
T  17750 tgtgtagtattttgatcatatcttgagttctagatttttaaatgaggccagaaaaacgcccaaataaagctaacactcatctctacaaccttcatgaaga 17849  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagt-ttttgattttatttcgggtacagaaatcgc-gatttcacatctgcgatttagcattaagggacc 217  Q
    ||   || ||||| |   |||| ||||||||| || |||  ||||  |||||| |||||||||||| |||||    |||||| ||| || ||| ||||||    
T  17850 cactaaatcctaaatattaacagaaaagtcccggtgtttatatttgttttcggttacagaaatcgcagattt----tctgcgctttcgccttaggggacc 17945  T
Q  218 tttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactc 273  Q
    |||||||||| | ||||  | |||||||||||||||| ||||||||||||||||||    
T  17946 tttcctaacttcatttttaaccctaaactcgccaaactcgaccctaatcttcactc 18001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 142744 - 142874
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||| ||| || || ||| |||||||||||| |  | ||||||||||||||| |||||    
T  142744 tgtgtagtattttgatcatatcttgagttgtagattttggaatgagatcagaccaacgcccaattaaagctaaaacgcatatctacaactttcatgaaga 142843  T
Q  120 catcgaaacctaattcggaacaaaaaagtcc 150  Q
    || | || |||||||| ||||| ||||||||    
T  142844 caccaaatcctaattctgaacagaaaagtcc 142874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 142903 - 142959
Alignment:
Q  217 ctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactc 273  Q
    ||||| ||||| |||||| || |||||||||||||||| ||||| ||||||||||||    
T  142903 ctttcgtaacttcgtttttgaccctaaactcgccaaactcgaccttaatcttcactc 142959  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 9799030 - 9798929
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||| ||||||| |||| || || |||||||||| || ||||||||||||||| |||||    
T  9799030 tgtgtagtattttgatcataacttaagttctagatgtctgaatgaagtcaaaccaaaggcagatgaaagctaacattcatatctacaactttcatgaaga 9798931  T
Q  120 ca 121  Q
    ||    
T  9798930 ca 9798929  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 17861801 - 17861667
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||| || || ||  |||||||||||| |  | ||||||||||||||| ||| |    
T  17861801 tgtgtagtattttgatcatatcttgagttctatattttggaatgaggtcagaccaatgcacaattaaagctaaaacgcatatctacaactttcatgaata 17861702  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagt 154  Q
    ||   || |||||||| ||||| ||||||||||||    
T  17861701 cacacaatcctaattctgaacagaaaagtcccagt 17861667  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 17861642 - 17861586
Alignment:
Q  217 ctttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactc 273  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||    
T  17861642 ctttcctaacttcgttttcgaccctaaactcgccaaactcgaccctaatcttcactc 17861586  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 25791449 - 25791588
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaa 114  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| || ||  |||||||||| |||||| || ||||||||| |||||     
T  25791449 acctatgtgtagtattttgatcatatcttgagttctagattttggaataaggtcagaccaactccaaattaaatctaacactcatatctacaaatttcat 25791548  T
Q  115 gaagacatcgaaacctaattcggaacaaaaaagtcccagt 154  Q
    || ||||   || |||||||| ||||| |||| |||||||    
T  25791549 gaggacacataatcctaattctgaacagaaaaatcccagt 25791588  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 23908609 - 23908727
Alignment:
Q  21 gtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaagac 120  Q
    |||||||| ||||||||||||| |||||| ||| || | ||||||||||||| ||  || |||||||  ||||| || ||||||||||||||| ||||||    
T  23908609 gtgtagtaatttgatcatatctagagttcaagaagttgtaatgaggtcaaaccaactcctaattaaatttaacattcatatctacaactttcatgaagac 23908708  T
Q  121 atcgaaacctaattcggaa 139  Q
    | | |||||||||| ||||    
T  23908709 accaaaacctaattaggaa 23908727  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 23908799 - 23909056
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    |||||| |||||||||||||||| |||   |||| ||  |||||||||||||  || |||   |||||||||||   | ||||||||||||| | |||||    
T  23908799 tgtgtaatattttgatcatatctagagcaatagacgtttgaatgaggtcaaaacaacgccctgttaaagctaacttgcatatctacaactttaatgaaga 23908898  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgattttatttcgggtacagaaatcgcgatttcacatctgcgatttagcattaagggacctt 219  Q
    || | || |||||||| ||||| ||||||||||||||||  |||| |||| | ||| |||||              ||||||||||| || | || | ||    
T  23908899 caccaaagcctaattctgaacagaaaagtcccagtttttatttttgtttctgttaccgaaata-------------tgcgatttagccttgaagggcttt 23908985  T
Q  220 tcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcat 290  Q
    |||||||||||||||| | |||||||||||||||||| |  |||||||| ||||||| || ||||||||||    
T  23908986 tcctaactccgttttcaaccctaaactcgccaaacccaattctaatctttactccatgattaccctatcat 23909056  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 25581955 - 25581896
Alignment:
Q  99 tatctacaactttcaagaagacatcgaaacctaattcggaacaaaaaagtcccagttttt 158  Q
    ||||||||||||||| ||||||||| ||||||||||  ||| | ||||||||||||||||    
T  25581955 tatctacaactttcatgaagacatcaaaacctaattatgaatagaaaagtcccagttttt 25581896  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 13938442 - 13938499
Alignment:
Q  84 taaagctaacagtcgtatctacaactttcaagaagacatcgaaacctaattcggaaca 141  Q
    ||||||||||| || ||||||||||||||| ||||||  | |||||||||||||||||    
T  13938442 taaagctaacattcatatctacaactttcatgaagacgcccaaacctaattcggaaca 13938499  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 24144307 - 24144205
Alignment:
Q  19 gtgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaag 118  Q
    ||||||||||||||||||||||||  |||| | ||||||  |||||| |||||  |||  ||| | ||| | |||| || ||||||||||||||| ||||    
T  24144307 gtgtgtagtattttgatcatatctcaagttatggatgtccaaatgagttcaaatgaaatacaattgaaatcaaacattcatatctacaactttcatgaag 24144208  T
Q  119 aca 121  Q
    |||    
T  24144207 aca 24144205  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 32948402 - 32948435
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctaga 53  Q
    ||||||||||||||||||||||| ||||||||||    
T  32948402 tgtgtagtattttgatcatatctagagttctaga 32948435  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 25581634 - 25581570
Alignment:
Q  225 actccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatca 289  Q
    |||||||||| |||| || |||| |||||| |||||||||||||||| |||| || || ||||||    
T  25581634 actccgtttttgatcgtatactctccaaactcgaccctaatcttcaccccatgattacactatca 25581570  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 25582032 - 25582000
Alignment:
Q  22 tgtagtattttgatcatatcttgagttctagat 54  Q
    ||||||||||| |||||||||||||||||||||    
T  25582032 tgtagtattttcatcatatcttgagttctagat 25582000  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 21496174 - 21496417
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttcaagaaga 119  Q
    ||||||||||||  |||||||| |||||||||||||| ||||| ||||||||| || |||||||||||  ||||| |  ||  ||||||||| | || ||    
T  21496174 tgtgtagtatttgaatcatatcatgagttctagatgttggaataaggtcaaaccaatgccaaattaaatataacattt-tagatacaactttaatgagga 21496272  T
Q  120 catcgaaacctaattcggaacaaaaaagtcccagtttttgattttattt-cgggtacagaaatcgcgatttcacatctgcgatttagcattaagggacct 218  Q
    |||| ||||||| ||  ||||  ||||||||||||||||  |||| ||| ||| |||||||||              |||||||| || | | |||| ||    
T  21496273 catcaaaacctagttttgaacggaaaagtcccagtttttatttttgttttcggttacagaaatt-------------tgcgatttcgcctgaggggaact 21496359  T
Q  219 ttcctaactccgttttcgatcctaaactcgccaaacccgaccctaatcttcactccat 276  Q
    ||| ||||||||||||||| |||||||||||||||| | |||||||| ||||||||||    
T  21496360 ttcttaactccgttttcgaccctaaactcgccaaacacaaccctaatattcactccat 21496417  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 20761824 - 20761867
Alignment:
Q  15 acctgtgtgtagtattttgatcatatcttgagttctagatgtcg 58  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  20761824 acctatgtgtagtattttaatcatatcttgagttctagatgtcg 20761867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 27318144 - 27318237
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagatgtcggaatgaggtcaaacaaaagccaaattaaagctaacagtcgtatctacaactttca 113  Q
    |||||||||||||||||||| | | |||| |||||||| |||||  ||||||  || | ||||| |||| |||||  | |||||||||||||||    
T  27318144 tgtgtagtattttgatcatagcataagttgtagatgtccgaatggtgtcaaatcaatggcaaatgaaaggtaacatccatatctacaactttca 27318237  T

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Target: scaffold1405 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 1392 - 1451
Alignment:
Q  99 tatctacaactttcaagaagacatcgaaacctaattcggaacaaaaaagtcccagttttt 158  Q
    ||||||||||||||| ||||||||| ||||||||||  ||| | ||||||||||||||||    
T  1392 tatctacaactttcacgaagacatcaaaacctaattatgaatagaaaagtcccagttttt 1451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 14059 - 14118
Alignment:
Q  99 tatctacaactttcaagaagacatcgaaacctaattcggaacaaaaaagtcccagttttt 158  Q
    ||||||||||||||| ||||| ||  ||||||||||  ||||| ||||||||||||||||    
T  14059 tatctacaactttcatgaagaaataaaaacctaattatgaacagaaaagtcccagttttt 14118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 13877 - 13918
Alignment:
Q  100 atctacaactttcaagaagacatcgaaacctaattcggaaca 141  Q
    |||||||||||||| |||||| || |||||||||||||||||    
T  13877 atctacaactttcatgaagacttccaaacctaattcggaaca 13918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 12055 - 12021
Alignment:
Q  20 tgtgtagtattttgatcatatcttgagttctagat 54  Q
    |||||||||||||||||||||||||| ||||||||    
T  12055 tgtgtagtattttgatcatatcttgatttctagat 12021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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