View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17921_low_2 (Length: 387)
Name: NF17921_low_2
Description: NF17921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17921_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 25338992 - 25339348
Alignment:
| Q |
17 |
gagagcaaaaaattggacagaagtggatatccttgttttcaatacctatgtatggtggatgagtggttctaggattaaatcattgtaagctttctttgaa |
116 |
Q |
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| T |
25338992 |
gagagcaaaaaattggacagaagtggatatccttgttttcaatacctatgtatggtggatgagtggttctaggattaaatcattgtaagctttctttgaa |
25339091 |
T |
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| Q |
117 |
cctatttgaattaaatcattaaatatcatttgttgttcatgatcaatatcattatttcaaactgcagttacgctgtgaaccgttatattacggtgaaata |
216 |
Q |
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| T |
25339092 |
cctatttgaattaaattattaaatatcatttgttgttcatgatcaatatcattattttaaactgcagttacgctgtgaacagttatattacggtgaaata |
25339191 |
T |
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| Q |
217 |
tgaaaagataaagttaatgtagccacaattacggtcgtgaagccgttatattgtggctgttgttgcgattgtggactgcaatttaaaaccatgatggata |
316 |
Q |
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| T |
25339192 |
tgaaaagataaagttaatgtaaccacaattacggtcgtgaagccgttatattgtgactgttgttgcgattgtggactgcaatttaaaatcatgatggata |
25339291 |
T |
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| Q |
317 |
ttcaacaacgacttacataattgatatttatactcttaaaccaaagggatgaaaatg |
373 |
Q |
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| T |
25339292 |
ttcaacaacgacttacataattgatatttatactcttaaaccaaagggatgaaaatg |
25339348 |
T |
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Back To:
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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 5231634 - 5231715
Alignment:
| Q |
24 |
aaaaattggacagaagtggatatccttgttttcaatacctatgtatggtggatgagtggttctaggattaaatcattgtaag |
105 |
Q |
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| T |
5231634 |
aaaaattggacaggagctgatatccttgttttcaatacctatgtttggtggatgagtggtcttagagttaaagcattgtaag |
5231715 |
T |
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