View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17921_low_3 (Length: 370)
Name: NF17921_low_3
Description: NF17921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17921_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 38391659 - 38391321
Alignment:
| Q |
22 |
tacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaagaattt |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38391659 |
tacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaagaattt |
38391560 |
T |
|
| Q |
122 |
gtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattctttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38391559 |
gtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttcagttttttagtacaacattctttt |
38391460 |
T |
|
| Q |
222 |
tgccaatctttgtaacaacttgtgtgttgaaagcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38391459 |
tgccaatctttgtaacaacttgtgtgttgaaagcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactca |
38391360 |
T |
|
| Q |
322 |
cttggtcaaaatggcagcattgtttataactgccctttg |
360 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||| |
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| T |
38391359 |
cttggtcaaaatggcagcattatttataactgtcctttg |
38391321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 38382805 - 38382463
Alignment:
| Q |
18 |
aacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
38382805 |
aacgtacaccagaaggaagacctgtgaaggatagttacctttatgttatcatttcaatggtttttgtttttggcattttgtcagttaagattaatcaaga |
38382706 |
T |
|
| Q |
118 |
atttgtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattc |
217 |
Q |
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||||| | | |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
38382705 |
atttgccataggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttcagtttttttgtacaacattc |
38382606 |
T |
|
| Q |
218 |
tttttgccaatctttgtaacaacttgtgtgttgaaagcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaa |
317 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38382605 |
tttttgccaatctttgtaaccacttgtgtgttgaaagcagatttttcaatggatgtttcatcatctgttatggtgtatactggtttagcggtccttgtaa |
38382506 |
T |
|
| Q |
318 |
ctcacttggtcaaaatggcagcattgtttataactgccctttg |
360 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
38382505 |
ctcacttggtcaaaatgacagcatgctttataactgccctttg |
38382463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 38400252 - 38399910
Alignment:
| Q |
18 |
aacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38400252 |
aacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaatt |
38400153 |
T |
|
| Q |
118 |
atttgtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattc |
217 |
Q |
| |
|
||||| ||| |||| |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
38400152 |
atttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctctaggatctgcattggttaagaagcttcagttctttggtacaacatta |
38400053 |
T |
|
| Q |
218 |
tttttgccaatctttgtaacaacttgtgtgttgaaagcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaa |
317 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| | ||||||| | | ||||| | | |||||||| |||||||| || |
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| T |
38400052 |
tttttgcctatctttgtaactacttgtgtgtttaaagcggatttttcaatggatatgtcatcatatgttatggtatctgctggtttactggtccttgcaa |
38399953 |
T |
|
| Q |
318 |
ctcacttggtcaaaatggcagcattgtttataactgccctttg |
360 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38399952 |
ctcacttggtcaaaatggcagcattatttataactgccctttg |
38399910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 360
Target Start/End: Original strand, 37839833 - 37840171
Alignment:
| Q |
22 |
tacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaagaattt |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
37839833 |
tacaccagaaggaagacctgtgaaagatagttacatttatgttatcatttcaacggtttttcttcttggtattttttcagttaagattaatcaagaattt |
37839932 |
T |
|
| Q |
122 |
gtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattctttt |
221 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
37839933 |
gtcttaggagccttcattttgggactgtctgttcctgaaggagctcctttaggatctacattggttaagaagcttcagttctttggtacaacattctttt |
37840032 |
T |
|
| Q |
222 |
tgccaatctttgtaacaacttgtgtgttgaaagcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactca |
321 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||| || |||||||| |||||| | || ||| |
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| T |
37840033 |
tgcctatctttgtaactacttgtgtgttgaaagctgatttttcaatggatttgacatcatatattatggtgtctaatggtttagtggtcctagcaattca |
37840132 |
T |
|
| Q |
322 |
cttggtcaaaatggcagcattgtttataactgccctttg |
360 |
Q |
| |
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| ||||||||||| |||||| ||||||||||| ||||| |
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| T |
37840133 |
catggtcaaaatgacagcatgttttataactgctctttg |
37840171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 37831745 - 37831909
Alignment:
| Q |
76 |
ggtttttgttcttggtattttgt-cagttaagattaatcaagaatttgtcttgggagttttcgttttgggact----gtctgttcctgaaggacctcctt |
170 |
Q |
| |
|
||||||||||||||||||||| | | |||||||| ||||||||||| |||| |||| ||||||||||||||| || ||||| |||||||||||||| |
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| T |
37831745 |
ggtttttgttcttggtatttttttcggttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgtttgttcgtgaaggacctcctt |
37831844 |
T |
|
| Q |
171 |
taggatcagcattggttaagaagcttcagttttttagtacaacattctttttgccaatctttgta |
235 |
Q |
| |
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|| ||| | |||||||||||||||||||| ||| || ||||||| ||||| | ||||||||| |
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| T |
37831845 |
taacatctgtgttggttaagaagcttcagttctttggtccaacattatttttttctatctttgta |
37831909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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