View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17922_high_4 (Length: 572)
Name: NF17922_high_4
Description: NF17922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17922_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 288 - 569
Target Start/End: Complemental strand, 24598449 - 24598169
Alignment:
| Q |
288 |
tcttgaaaacgtacacaaatgtaaaagtggtgttaaagagagaaagaagcttaataaatagatacacaacaatacaaaaataagcacctaagtaggtatt |
387 |
Q |
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| T |
24598449 |
tcttgaaaacgtacacaaatgtaaaagtggtgttaaagagagaaagaagcttaataaatagatacacaacaatacaaaa-tatgcacctaagtaggtatt |
24598351 |
T |
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| Q |
388 |
taataaaaggtatgcaaaaaagttggaacttgtactgttacggtcaaagacggatgaagagtttgtttgaaggttgaagaagagaaagaggaggcaaatt |
487 |
Q |
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| T |
24598350 |
taataaaaggtatgcaaaaaagttggaacttgtactgttacggtcaaagacggatgaagagtttgtttgaaggttgaagaagagaaagaggaggcaaatt |
24598251 |
T |
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| Q |
488 |
ggtgcaaggaaaagtaaacaaaaggagaagaagggtgtgaagannnnnnnaagggtgtgtgtggacgttaaccagtcatatt |
569 |
Q |
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| T |
24598250 |
ggtgcaaggaaaagtaaacaaaaggagaagaagggtgtgaagatttttttaagggtgtgtgtggacgttaaccagacatatt |
24598169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 24598717 - 24598482
Alignment:
| Q |
18 |
ccaggatcagtaaaagaactactcaaccctatagttcttccgccgccgcgcttttccaaatgcttctttcccatcaaattcttccacaaaacaacatctc |
117 |
Q |
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| T |
24598717 |
ccaggatcagtaaaagaactactcaaccccatagttcttccgccgccgcgcttttccaaatgcttctttcccatcaaattcttccacaaaacaacatccc |
24598618 |
T |
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| Q |
118 |
cacaaccaatcttgagattcatattagttgttggaagtgcatccacacacaaacatggacctgtgtgtgagtccatcattgatgaaccaataacagatat |
217 |
Q |
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| T |
24598617 |
cacaaccaatcttgagattcatattagttgttggaagtgcatccacacacaaacatggaccagtgtgtgagtccatcattgatgaaccaataacagatat |
24598518 |
T |
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| Q |
218 |
tgctcctaccatattcctctctcacaaattcaaagtat |
255 |
Q |
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| T |
24598517 |
tgctcctaccatattcc--tctcacaaattcaaagtat |
24598482 |
T |
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