View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17922_high_6 (Length: 425)

Name: NF17922_high_6

Description: NF17922

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17922_high_6

[»] chr4 (2 HSPs)

[»] chr8 (1 HSPs)

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 52; E-Value: 1e-20

Query Start/End: Original strand, 15 - 101

Target Start/End: Complemental strand, 55080537 - 55080453

Alignment:

Q	15	atcaagtgacacatgttctatctctcttaattaattttagtgacctcactttgatgacatgactttccttccatttggaacataaca	101	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	55080537	atcaagtgacacatgtcctatctctctaac--aattttagtgacctcactttgatgacatggctttctttccatttggatcataaca	55080453	T

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Target: chr4; HSP #2

Raw Score: 29; E-Value: 0.0000006

Query Start/End: Original strand, 148 - 188

Target Start/End: Complemental strand, 5074830 - 5074790

Alignment:

Q	148	gacagggaatagtgaaggttttggttcgtcggagaacggtg	188	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	5074830	gacagggaagagtgaaggttttgcttcgtcggaggacggtg	5074790	T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 36; E-Value: 0.00000000004

Query Start/End: Original strand, 248 - 338

Target Start/End: Original strand, 29265361 - 29265452

Alignment:

Q	248	cttcttccttctcttctccattccatctccatcagattccaaggaatctagaatcgtgtagga-ggaggtaaggacttctccggagatcgat	338	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	29265361	cttcttccttctcttttcctttcagtctcgatcagattccgaagaatatagaatcacgtatgaaggaggtaaggacttctccggaggtcgat	29265452	T

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