View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17922_low_1 (Length: 764)
Name: NF17922_low_1
Description: NF17922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17922_low_1 |
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| [»] scaffold0035 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 14 - 748
Target Start/End: Original strand, 5823266 - 5824000
Alignment:
| Q |
14 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823266 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
5823365 |
T |
|
| Q |
114 |
taccttgaggttattgtcactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5823366 |
taccttgaggttattgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgcttcat |
5823465 |
T |
|
| Q |
214 |
ctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823466 |
ctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccact |
5823565 |
T |
|
| Q |
314 |
tgacgagtcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823566 |
tgacgagtcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaa |
5823665 |
T |
|
| Q |
414 |
gttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaa |
513 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||| |
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| T |
5823666 |
gttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaacgtgctgttgagtatcgattcggataaaa |
5823765 |
T |
|
| Q |
514 |
cagacgaatcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacacaagcattgttgagtataccagttttgcagataccaa |
613 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |||| ||||| || ||||||| ||||| ||||||| || || |||||||| || || || |
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| T |
5823766 |
cagacgaatcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaacaagtgttgttgaatacactagttttgctgaaacaaa |
5823865 |
T |
|
| Q |
614 |
atcaattcctggacattatgtgatttattgggaacttttgatgaagggttcatctcatcctccaacaaatgaagtattgaatcaatgttgtttggttatg |
713 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
5823866 |
atcaattcctggacattatgttatttattgggagcttttgatgaaggattcctcttgtcctccaactgatgaagtgttgaatcaatgttgtttggttatg |
5823965 |
T |
|
| Q |
714 |
gaagagtgtttgaattctgtttatagacaaggaag |
748 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |
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| T |
5823966 |
gaagagtctttgaattctgtttatagacaaggaag |
5824000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 51 - 312
Target Start/End: Complemental strand, 5832763 - 5832502
Alignment:
| Q |
51 |
acaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagt |
150 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
5832763 |
acaaaagaatgttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagt |
5832664 |
T |
|
| Q |
151 |
acattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgac |
250 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
5832663 |
acattcctacccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaaccttaagcctatgac |
5832564 |
T |
|
| Q |
251 |
agaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
312 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5832563 |
agaaccaaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
5832502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 321 - 748
Target Start/End: Complemental strand, 5832466 - 5832039
Alignment:
| Q |
321 |
tcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaagttggtg |
420 |
Q |
| |
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||||||||||| ||||||||||||| |||||| |||||||||||||||| || || | || || |||||||| ||| |||| ||||||| |||||||| |
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| T |
5832466 |
tcacctccaaagctagtagaccttgctgatgtccaaattggtaaattttatgagcttgtaatcacaacttattccggtttttgccgttacagagttggtg |
5832367 |
T |
|
| Q |
421 |
atattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaacagacga |
520 |
Q |
| |
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||||||||||||| | ||||||||||| || |||| || ||||| || || ||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
5832366 |
atattcttcaagtcaatggattccataattctgatcctcagttcaaattcgtgaggcgaaagaacgtgttgttgagtatcgattcggataaaacagacga |
5832267 |
T |
|
| Q |
521 |
atcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacacaagcattgttgagtataccagttttgcagataccaaatcaatt |
620 |
Q |
| |
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||| |||||||||||||| ||||||||||| |||| ||||| || ||||||| ||||| ||||||| || || |||||||| || || ||||||||| |
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| T |
5832266 |
atcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaacaagtgttgttgaatacactagttttgctgaaacaaaatcaatt |
5832167 |
T |
|
| Q |
621 |
cctggacattatgtgatttattgggaacttttgatgaagggttcatctcatcctccaacaaatgaagtattgaatcaatgttgtttggttatggaagagt |
720 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
5832166 |
cctggacattatgttatttattgggagcttttgatgaaggattcctcttgtcctccaactgatgaagtgttgaatcaatgttgtttggttatggaagagt |
5832067 |
T |
|
| Q |
721 |
gtttgaattctgtttatagacaaggaag |
748 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
5832066 |
ctttgaattctgtttatagacaaggaag |
5832039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 69 - 304
Target Start/End: Original strand, 78088 - 78323
Alignment:
| Q |
69 |
gaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaacccttgatt |
168 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||| || || | || || ||||| ||||||||||||||||| ||||||||||| ||| ||| |
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| T |
78088 |
gaaaattgggaaggaataatcataaagatttggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaatt |
78187 |
T |
|
| Q |
169 |
attacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttc |
268 |
Q |
| |
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| ||||||||| |||| ||||||| || |||||||| || |||||||| ||||||||||||||||| || ||| |||| ||| ||||| |
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| T |
78188 |
actacagtggtgggttacctctttcatgtactatgtatgcttcctcagaatgctactttggacttaaccttaatccaatgtgcaaaccatctgaggtttc |
78287 |
T |
|
| Q |
269 |
ttacaccattatgccaaacatgggttactttgaatt |
304 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |
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|
| T |
78288 |
atacaccatcatgccaaacatggcctactttgaatt |
78323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 538
Target Start/End: Original strand, 78424 - 78557
Alignment:
| Q |
405 |
cgttacaaagttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgata |
504 |
Q |
| |
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||||||| ||||||||| ||||| | || || || || |||||||||| ||||||||| | ||||| | ||||||||||||||| | ||||||||| |
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| T |
78424 |
cgttacagagttggtgacattctccgtgtcaccgggtttcataactcaacaccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgatt |
78523 |
T |
|
| Q |
505 |
tggataaaacagacgaatcagagcttcaaaaagc |
538 |
Q |
| |
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|||||||||||| || |||||||| |||||||| |
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|
| T |
78524 |
cggataaaacagatgagtcagagctacaaaaagc |
78557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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