View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17922_low_11 (Length: 244)
Name: NF17922_low_11
Description: NF17922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17922_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 55695047 - 55695258
Alignment:
| Q |
15 |
aaggtcgaggaaacaacaccaccggcctccgaggttcctgcttcagaaccagccaccaccgaagaagtagtagcagtggagaataaagaaactgaagttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55695047 |
aaggtcgaggaaacaacaccaccggcctccgaggttcctgcttcagaaccagccaccaccgaagaagtagtagcagtggagaatgaagaaactgaagttc |
55695146 |
T |
|
| Q |
115 |
ccgttgaagctgagagtacacaagtaacccaggaagccaagccagaggtagagaacccggaacctgaaaaagtcgaagtgaaagaggaagtatcagctga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55695147 |
ccgttgaagctgagagtacacaagtaacccaggaagccaagccagaggtagagaacccggaacctgaaaaagtcgaagtgaaagaggaagtatcagctga |
55695246 |
T |
|
| Q |
215 |
agaggctaaaga |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55695247 |
agaggctaaaga |
55695258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 55695284 - 55695330
Alignment:
| Q |
180 |
gaaaaagtcgaagtgaaagaggaagtatcagctgaagaggctaaaga |
226 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
55695284 |
gaaaaagtcgaagcaaaagaggaagtatcaactgaagaggctaaaga |
55695330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University