View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17922_low_2 (Length: 605)
Name: NF17922_low_2
Description: NF17922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17922_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 23 - 589
Target Start/End: Complemental strand, 25896544 - 25895992
Alignment:
| Q |
23 |
caatgttatcaataacttgtttgtcttttcaaaacaccacagacttgagtgtgaagttcatatcaatgaacattctgcatttcattttccatcgctgaag |
122 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25896544 |
caatgttatcaataacctgtttttcttttcaaaacaccacagacttgagtgtgaagttcatatcaatgaacattctgcatttcattttccatcactgaag |
25896445 |
T |
|
| Q |
123 |
agattatatatcaacttaggcgttatgatttcagaagctgccttactctctggttgccccggccttgaaactttggatggttacttttgctgtgaccctc |
222 |
Q |
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| T |
25896444 |
atgttatatatcgacttaggcgttatgatttcagaagttgctttactctctggctgccccagcctggaaattttcgatggttacttttgctgtgaccctc |
25896345 |
T |
|
| Q |
223 |
cagactatgtcaccaaacttctcattccaccttcgtccagatccaagagatcgaaatccaccactgacaatttcacctggagctggagttaccttaatgt |
322 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25896344 |
cagactatgtcaccaaacttctcattccaccttcctccagatccaagagatcgaaatccaccactgacaatttcacctggagctggagttaccttaatgt |
25896245 |
T |
|
| Q |
323 |
acgtggaaataccgaattgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcct |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25896244 |
acgtggaaataccgaattgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgaccct |
25896145 |
T |
|
| Q |
423 |
attctcaaacacctccgagatcacaaagagcatatgaatctactttcatgtcattcaacatctaaggtgaag-ttttatttttatggtttgtatttgtat |
521 |
Q |
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| T |
25896144 |
attctcaaacacctccgagatcacaaagagtatatgaatctactttcatgtcattcaacatctaaggtgaagtttttatttgtatggttt---------- |
25896055 |
T |
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| Q |
522 |
atatagtattgcactaattttgctccatcacttgttgttatcacgtacaaccagtcgccacttcatgc |
589 |
Q |
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| T |
25896054 |
-----gtattgtactaattttgctccatcacttgttgttatcacgtacaaccagtcgccacttcatgc |
25895992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 30078253 - 30078343
Alignment:
| Q |
340 |
tgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctcaa |
430 |
Q |
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| T |
30078253 |
tgggcatcgttggcaactttcatagtatggtggaagcatttctcgatgtcttttcctcacgtgaaagtgaatttgtcgaccctattctcaa |
30078343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 546 - 587
Target Start/End: Original strand, 24525327 - 24525368
Alignment:
| Q |
546 |
ccatcacttgttgttatcacgtacaaccagtcgccacttcat |
587 |
Q |
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| T |
24525327 |
ccatcacttgttgttatcatgtacaaccagtggccacttcat |
24525368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 24525230 - 24525281
Alignment:
| Q |
459 |
aatctactttcatgtcattcaacatctaaggtgaagttttatttttatggtt |
510 |
Q |
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| T |
24525230 |
aatctacttttgcgtcattcaacatcaaaggtgaagttttatttttacggtt |
24525281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 17772516 - 17772607
Alignment:
| Q |
338 |
attgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctca |
429 |
Q |
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| T |
17772516 |
attgggcatcattggcaacttgcagagtatggaggaagcatatcttgatgtcttttccctgcgtgaaagtgaatttgtcgaccctatgctca |
17772607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 45793300 - 45793348
Alignment:
| Q |
337 |
aattgggcatcattggccatttccacagtatgatggaagcatttcttga |
385 |
Q |
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| T |
45793300 |
aattgggcataattagcaactttcacagtatgatggaagcatttcttga |
45793348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 36162171 - 36162231
Alignment:
| Q |
370 |
tggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctcaa |
430 |
Q |
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||||||||||| |||| |||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
36162171 |
tggaagcattttttgatgtcttttccctgactgaaagtgaatttgtcgaccctattctcaa |
36162231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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