View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17922_low_3 (Length: 573)
Name: NF17922_low_3
Description: NF17922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17922_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Original strand, 49004405 - 49004949
Alignment:
| Q |
13 |
cagattgtgcttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaatt |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49004405 |
cagattgtacttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctgaatatttctcttgttcttgagaagattgagaatt |
49004504 |
T |
|
| Q |
113 |
ttactcagagggtagctatataatgttacacttacacactgtttgaagcttgaaatcataagctagatgaatgttaaatctttgaaatgtttaattgtgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49004505 |
ttactcagagggtagctatataatgttacacttacacactgtttgaagcttgaaatcataagctagatgaatgttaaatctttgaaatgtttaattgtgg |
49004604 |
T |
|
| Q |
213 |
atttcttgtaggtatctgagcttttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgtgagttatgaagtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49004605 |
atttcttgtaggtatctgagcttttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgtgagttatgaagtt |
49004704 |
T |
|
| Q |
313 |
accattgaacattcaatgtttaaactatctttcactttaaatattgttagtttttgactttttatgttgtgattcttttaactttcaaataagcaggatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49004705 |
accattgaacattcaatgtttaaactatctttcactttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggatt |
49004804 |
T |
|
| Q |
413 |
cacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaatgaggaagccaatgctcttctgcaaaatgctcgat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49004805 |
cacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgagcactcgatgcctcaaatgaggaagccaatgctcttctgcaaaatgctcgat |
49004904 |
T |
|
| Q |
513 |
atgtacttcagctcactcgtaatgattagtcaatgtagttgcctc |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49004905 |
atgtacttcagctcactcgtaatgattagtcaatgtagttgcctc |
49004949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Original strand, 38160424 - 38160973
Alignment:
| Q |
9 |
atcacagattgtgcttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
38160424 |
atcacagattgtgcttgtacaggaggaaggatttgagactaaccaaattgggtctgaggaaatggaactcaatgtttctcttgttcttgagaagattgag |
38160523 |
T |
|
| Q |
109 |
aattttactcagagggtagctatataatgttacacttacacactgtttgaagcttgaaatcataagctagatgaatgttaaatctttgaaatgtttaatt |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38160524 |
aattttactcagagggtagctatataaagttacacctacacactgtttgaagcttgaaatcatactgtagatgaatgttaaatctttgaaatgtttaatt |
38160623 |
T |
|
| Q |
209 |
gtggatttcttgtaggtatctgagcttttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgtgagttatga |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38160624 |
gtggatttcttgtaggtatctgagctcttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgcgagttatga |
38160723 |
T |
|
| Q |
309 |
agttaccattgaacattcaatgtttaaactatctttcactttaaatattgttagtttttgactttttatgttgtgattcttttaactttcaaataagcag |
408 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||||| |||| |||| |
|
|
| T |
38160724 |
agttaccattgaacattcaaagctgaaactatctttcacttttaatattgttagtttttgactttttgtggtgttattcttttaactttccaatatgcag |
38160823 |
T |
|
| Q |
409 |
gattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaatgaggaagccaatgctcttctgcaaaatgct |
508 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38160824 |
gattcacaaggagcaggtcgaaaaatggcaggaagaaatcaaagaactgcgtgcacttgatgcctcaaatgaggaagccaatgctcttctgcaaaatgct |
38160923 |
T |
|
| Q |
509 |
cgatatgtacttcagctcactcgtaatgattagtcaatgtagttgcctct |
558 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
38160924 |
cgatatgtacttcagctcactcgaaatgattagtcaatgtagatgcctct |
38160973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 177 - 549
Target Start/End: Original strand, 38116767 - 38117138
Alignment:
| Q |
177 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcttgtaggtatctgagcttttggaatcagggaaaacaatgcttaaggagctatgcaatga |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38116767 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcatgtaggtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatga |
38116866 |
T |
|
| Q |
277 |
atttgaagagaaactgattatgtgagttatgaagttaccattgaacattcaatgtttaaactatctttcactttaaatattgttagtttttgacttttta |
376 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38116867 |
atttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaatgtttaaactatctttcactt-aaatattgttagtttttgacttttta |
38116965 |
T |
|
| Q |
377 |
tgttgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaa |
476 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38116966 |
tggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaa |
38117065 |
T |
|
| Q |
477 |
atgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcagctcactcgtaatgattagtcaatgta |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38117066 |
atgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcagctcactcgtaatgattagtcaatgta |
38117138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 38116624 - 38116760
Alignment:
| Q |
13 |
cagattgtgcttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaatt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38116624 |
cagattgtacttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaatt |
38116723 |
T |
|
| Q |
113 |
ttactcagagggtagctatataatgttacacttacac |
149 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
38116724 |
ttacccagagggtagctatataaagttacacttacac |
38116760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University