View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17923_high_1 (Length: 692)
Name: NF17923_high_1
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17923_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 640; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 20 - 678
Target Start/End: Complemental strand, 46930428 - 46929769
Alignment:
| Q |
20 |
gtgtatccctaatagttactactatatgcatagcagcaacaattgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930428 |
gtgtatccctaatagttactactatatgcatagcagcaacaattgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagc |
46930329 |
T |
|
| Q |
120 |
agctttatagacaaaaaacaagtaggccaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctagatt-aagtactgttgtccaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |
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| T |
46930328 |
agctttatagacaaaaaacaagtaggccaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctagatttaagtgccgttgtccaaa |
46930229 |
T |
|
| Q |
219 |
tcaacatattcaactaactacagaagatacctctttcactcaaacacttatctaagagttcttcttaacctcgctcgaacaaaaacatattcaccatcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930228 |
tcaacatattcaactaactacagaagatacctctttcactcaaacacttatctaagagttcttcttaacctcgctcgaacaaaaacatattcaccatcta |
46930129 |
T |
|
| Q |
319 |
accataccaatgatcgggtcatccagcacactaaaggatgctagaaagcacctcaattttcaacctaaaaaacacaaagaaaacgcctgaagccaatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930128 |
accataccaatgatcgggtcatccagcacactaaaggatgctagaaagcacctcaattttcaacctaaaaaacacaaagaaaacgcctgaagccaatttt |
46930029 |
T |
|
| Q |
419 |
ttctcattatcttcagcaagaatattagtcttttgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatcca |
518 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930028 |
ttctcattatcttcagaaagaatattagtcttttgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatcca |
46929929 |
T |
|
| Q |
519 |
tggtcctgtctttgagaatttcatgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929928 |
tggtcctgtctttgagaatttcatgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttc |
46929829 |
T |
|
| Q |
619 |
ttttatttctgcaagagtcttgggccctgaaaatgcattggatttctgaatagatctctg |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929828 |
ttttatttctgcaagagtcttgggccctgaaaatgcattggatttctgaatagatctctg |
46929769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 39 - 678
Target Start/End: Complemental strand, 47167627 - 47166974
Alignment:
| Q |
39 |
tactatatgcatagcagcaacaattgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagcagctttatagacaaaaaac |
138 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167627 |
tactatatgcatagcagcaacagttgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagcagctttatagacaaaaaac |
47167528 |
T |
|
| Q |
139 |
aagtaggccaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctaga-ttaagtactgttgtccaaatcaacatattcaactaact |
237 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
47167527 |
aagtagggcaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctagatttaagtgtcgttgtccaaatcaacatattcaactaact |
47167428 |
T |
|
| Q |
238 |
acagaagatacctctttcactcaaaca---cttatctaagagttcttcttaacctcgctcgaacaaaaacatattcaccatctaaccataccaatgatcg |
334 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
47167427 |
acagaagatacctctttcactcaaacactgcttatctaagagttcttcttaacctcgctcgaacaagaacatattcaccatctaaccataccaatgatag |
47167328 |
T |
|
| Q |
335 |
ggtca------tccagcacactaaaggatgctagaaagcacctcaattttcaacctaaaaaaca--caaagaaaacgcctgaagcc--aattttttctca |
424 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||||| || |||||| |
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| T |
47167327 |
ggtcatccaggtccagcacactaaaggatgctagaaagcacctcaattttcaaccaaaaaaaaaagaaaagaaaacggctgaagccaaaaaaaattctca |
47167228 |
T |
|
| Q |
425 |
ttatcttcagcaagaatattagtcttttgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatccatggtcc |
524 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167227 |
ttatcttcagcaaaaatattagtcttctgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatccatggtcc |
47167128 |
T |
|
| Q |
525 |
tgtctttgagaatttcatgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttcttttat |
624 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167127 |
tgtctttgagaatttcatgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttcttttat |
47167028 |
T |
|
| Q |
625 |
ttctgcaagagtcttgggccctgaaaatgcattggatttctgaatagatctctg |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47167027 |
ttctgcaagagtcttgggccctgaaaatgcattggatttctgaatagatctctg |
47166974 |
T |
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