View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17923_high_11 (Length: 230)

Name: NF17923_high_11
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17923_high_11
NF17923_high_11
[»] chr4 (3 HSPs)
chr4 (49-132)||(1949342-1949425)
chr4 (9-49)||(49387456-49387497)
chr4 (9-48)||(26948259-26948299)
[»] chr8 (1 HSPs)
chr8 (9-50)||(26938184-26938226)
[»] chr6 (4 HSPs)
chr6 (9-50)||(9546408-9546450)
chr6 (9-50)||(13853140-13853182)
chr6 (9-48)||(2863580-2863620)
chr6 (9-48)||(2882883-2882923)
[»] chr1 (3 HSPs)
chr1 (9-49)||(26095487-26095528)
chr1 (9-48)||(9877677-9877717)
chr1 (9-49)||(45315256-45315296)
[»] chr7 (1 HSPs)
chr7 (9-48)||(34287791-34287831)
[»] chr5 (1 HSPs)
chr5 (9-48)||(7601593-7601633)
[»] chr2 (1 HSPs)
chr2 (13-48)||(9253112-9253148)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 1949425 - 1949342
Alignment:
Q  49 ttcatatatttatgcaattattaatttatagatacattcttttccattgaaaacaatccaagaacacaactacatagtcacaat 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1949425 ttcatatatttatgcaattattaatttatagatacatttttttccattgaaaacaatccaagaacacaactacatagtcacaat 1949342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 49387456 - 49387497
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcct 49  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  49387456 tacctgaaattaagttaagggactaaaagtataattttgcct 49387497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 26948259 - 26948299
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcc 48  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  26948259 tacctgaaattaagttaagggactaaaaatataattttgcc 26948299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 26938226 - 26938184
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcctt 50  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  26938226 tacctgaaattaagttaagggactaaaattataattttgcctt 26938184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 9546450 - 9546408
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcctt 50  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  9546450 tacctgaaattaagttaagggactaaaattgtaattttgcctt 9546408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 13853182 - 13853140
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcctt 50  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  13853182 tacctgaaattaagttaagggactaaaaatataattttgcctt 13853140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 2863620 - 2863580
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcc 48  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  2863620 tacctgaaattaagttaagggactaaaattgtaattttgcc 2863580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 2882923 - 2882883
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcc 48  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  2882923 tacctgaaattaagttaagggactaaaattgtaattttgcc 2882883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 26095528 - 26095487
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcct 49  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  26095528 tacctgaaattaagttaagggactaaaagtataattttgcct 26095487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 9877677 - 9877717
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcc 48  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  9877677 tacctgaaattaagttaagggactaaaaatataattttgcc 9877717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 45315296 - 45315256
Alignment:
Q  9 tacctgaaattaagttaagggacaaaattataattttgcct 49  Q
    |||||||||||||||||||||| |||| | |||||||||||    
T  45315296 tacctgaaattaagttaagggataaaagtgtaattttgcct 45315256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 34287791 - 34287831
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcc 48  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  34287791 tacctgaaattaagttaagggactaaaattgtaattttgcc 34287831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 7601633 - 7601593
Alignment:
Q  9 tacctgaaattaagttaagggac-aaaattataattttgcc 48  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  7601633 tacctgaaattaagttaagggactaaaaatataattttgcc 7601593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 9253148 - 9253112
Alignment:
Q  13 tgaaattaagttaagggac-aaaattataattttgcc 48  Q
    ||||||||||||||||||| |||||||||||||||||    
T  9253148 tgaaattaagttaagggactaaaattataattttgcc 9253112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University