View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17923_high_3 (Length: 370)
Name: NF17923_high_3
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17923_high_3 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 27985070 - 27984717
Alignment:
| Q |
13 |
aatatggctgattctgccacaattgtaatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27985070 |
aatatggctgattctgccacaattgtaatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgt |
27984971 |
T |
|
| Q |
113 |
gatggtgtcacatcatcaagtgtagttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcgnnnnnnnnnnnnngtggctacac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27984970 |
gatggtgtcacatcatcaagtgtagttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcg----tttttttttgtggctacac |
27984875 |
T |
|
| Q |
213 |
tgcaaaccttatgtaggtgaaatacaggaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgc |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27984874 |
tgcaaaccttatgtaggtgaaatgcaggaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgc |
27984775 |
T |
|
| Q |
313 |
ggtggaggaccgcaatttataaccatgcttctttgtgcttattattctccgatgattt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27984774 |
ggtggaggaccgcaatttataaccatgcttctttgtgcttattattctccgatgattt |
27984717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 28042372 - 28042019
Alignment:
| Q |
13 |
aatatggctgattctgccacaattgtaatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28042372 |
aatatggctgattctgccacaattgtaatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgt |
28042273 |
T |
|
| Q |
113 |
gatggtgtcacatcatcaagtgtagttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcgnnnnnnnnnnnnngtggctacac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28042272 |
gatggtgtcacatcatcaagtgtagttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcg----tttttttttgtggctacac |
28042177 |
T |
|
| Q |
213 |
tgcaaaccttatgtaggtgaaatacaggaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgc |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28042176 |
tgcaaaccttatgtaggtgaaatgcaggaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgc |
28042077 |
T |
|
| Q |
313 |
ggtggaggaccgcaatttataaccatgcttctttgtgcttattattctccgatgattt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28042076 |
ggtggaggaccgcaatttataaccatgcttctttgtgcttattattctccgatgattt |
28042019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 27239612 - 27239452
Alignment:
| Q |
22 |
gattctgccacaattgtaatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgtgatggtgtc |
121 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
27239612 |
gattctaccacaattgtaatcgtggtggtcgaaaaaccttggtgccacaattgtaattgtgg---------tggtcaaaaaaccttggtgtgatggtgtc |
27239522 |
T |
|
| Q |
122 |
acatcatcaagtgtagttgctaacttaatgtaaaatcaca---ctttgcatagttttaaattggggatgc |
188 |
Q |
| |
|
|||||| |||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27239521 |
acatcaccaagtgtagttgctaacttaatttagaatcacacttctttgcatagttttaaattggggatgc |
27239452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 370
Target Start/End: Complemental strand, 27239408 - 27239293
Alignment:
| Q |
259 |
ttgaaattgtagttgtgatatcattgcagagactt-caaatccagaatattgtgcggtggaggaccgcaa-tttataaccatgcttctttgtgctt--at |
354 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
27239408 |
ttgaaattgtagttgtgatttcattgcagagacttaaaaatccagaatattgtatggtgtaggaccgcaattttataaccatgcttctttgtgctttcgt |
27239309 |
T |
|
| Q |
355 |
tattctccgatgattt |
370 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27239308 |
tattctccgatgattt |
27239293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 273599 - 273655
Alignment:
| Q |
241 |
aaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaa |
297 |
Q |
| |
|
|||||| ||||| ||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
273599 |
aaaatgcgtccggtgcagttgaaattgtggttgtgatactattgaggagacttcaaa |
273655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University