View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17923_low_11 (Length: 237)
Name: NF17923_low_11
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17923_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 46238984 - 46239213
Alignment:
| Q |
1 |
agaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatctatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238984 |
agaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatctatgct |
46239083 |
T |
|
| Q |
101 |
gtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtcta |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239084 |
gtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtcta |
46239183 |
T |
|
| Q |
201 |
gtggggaagatgaagacaatttgatgatgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46239184 |
gtggggaagatgaagacaatttgatgatgt |
46239213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3455673 - 3455444
Alignment:
| Q |
1 |
agaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatctatgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3455673 |
agaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgcagatgagattgccatctatgct |
3455574 |
T |
|
| Q |
101 |
gtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtcta |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455573 |
gtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatgagtcta |
3455474 |
T |
|
| Q |
201 |
gtggggaagatgaagacaatttgatgatgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3455473 |
gtggggaagatgaagacaatttgatgatgt |
3455444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University