View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17923_low_3 (Length: 396)
Name: NF17923_low_3
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17923_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 5 - 386
Target Start/End: Original strand, 34231513 - 34231894
Alignment:
| Q |
5 |
tggtcaaatgccggattcttttcatctgtcaaacgaatttaaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaac |
104 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34231513 |
tggtcaaatcccggattcttttcatctgtcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaac |
34231612 |
T |
|
| Q |
105 |
cttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctat |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34231613 |
cttcgacatctcattaacttggatctttcatacaattcattaagcggtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctat |
34231712 |
T |
|
| Q |
205 |
attcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggtccattgcc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34231713 |
attcaaacaatttagtaggacaaattccactttccttatttaagttgactcaacttgttagattcgattgttcatataataaattaagaggtccattgcc |
34231812 |
T |
|
| Q |
305 |
gaataaaattacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcccctttg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34231813 |
aaataaaattacaggttttcaacagctagttcgttttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttg |
34231894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 275
Target Start/End: Complemental strand, 42124848 - 42124625
Alignment:
| Q |
52 |
tagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcag |
151 |
Q |
| |
|
|||||||||| |||||||| |||| |||||| || ||||||||||||||||||||||| || |||||| ||||||||||| | |||||||| || | |
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| T |
42124848 |
tagatttgagaggtaacaaaattgaaggtgagctgccaacatcactttcaaaccttcgacaactcattcacttggatcttgggtggaattcatttagtgg |
42124749 |
T |
|
| Q |
152 |
tcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatg |
251 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||||||||| | || ||| |||||||||| ||||||||||||| ||| ||||||| || |
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|
| T |
42124748 |
tcaaatcccagatgtgtttggtgggatgaccaaactgcaagaactcgatttaacttccaacaatttagaaggacaaattccatcttcactatttaacttg |
42124649 |
T |
|
| Q |
252 |
actcaacttgttagattagattgt |
275 |
Q |
| |
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||||| ||| | | |||||||||| |
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| T |
42124648 |
actcagcttttcacattagattgt |
42124625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 97 - 380
Target Start/End: Original strand, 34239357 - 34239640
Alignment:
| Q |
97 |
tttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact |
196 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||| ||||||| | ||| ||||||| |||||||||||||| |||||||||||||||||| | | |
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|
| T |
34239357 |
tttcaaaccttcaaaatctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaactgcaagtatt |
34239456 |
T |
|
| Q |
197 |
ccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggt |
296 |
Q |
| |
|
| |||| ||| ||||| |||| ||||||||||||| ||| |||||||| ||| |||||||||| ||||||||| | |||||||||||| ||| |
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|
| T |
34239457 |
ctatctagcttctaacaaattagaaggacaaattccatcttcattatttaacttgaatcaacttgttgatttagattgtgcttataataaattagagggt |
34239556 |
T |
|
| Q |
297 |
ccattgccgaataaaattacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcc |
380 |
Q |
| |
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||| | | ||||||||| ||||||||||| ||||| || |||| | |||||||||||| ||||| ||||||||||||||| |
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|
| T |
34239557 |
ccactacataataaaattgcaggttttcaaaagctaatttatttgaggttaaatgacaacttgctaaatggaacaattccttcc |
34239640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 41570765 - 41570876
Alignment:
| Q |
52 |
tagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcag |
151 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||||||||||||||| |||||| |||| || || || |||| ||||||||| || | |
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|
| T |
41570765 |
tagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttcaacatctcgttaatttagacctgtcatccaattcattcagtgg |
41570864 |
T |
|
| Q |
152 |
tcaaattccaga |
163 |
Q |
| |
|
|||||||||||| |
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|
| T |
41570865 |
tcaaattccaga |
41570876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 41712465 - 41712533
Alignment:
| Q |
127 |
atctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact |
196 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| |||||||| ||||| |||||||||||| |||||||||| |
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|
| T |
41712465 |
atctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaact |
41712533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 42118378 - 42118326
Alignment:
| Q |
93 |
tcactttcaaaccttcgccatctcattaacttggatctttcatacaattcatt |
145 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||| | ||||||||| |
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|
| T |
42118378 |
tcactttcaaaccttcaacaactcattcacttggatctttcttccaattcatt |
42118326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 97 - 290
Target Start/End: Complemental strand, 12249777 - 12249584
Alignment:
| Q |
97 |
tttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact |
196 |
Q |
| |
|
|||||||||||| | ||||||| || |||||||||||| ||||||||| ||| ||||||| |||||||| ||| | | ||||||||||||||||||||| |
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|
| T |
12249777 |
tttcaaaccttcaacgtctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgcaagaact |
12249678 |
T |
|
| Q |
197 |
ccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaatta |
290 |
Q |
| |
|
| |||| ||||||||| ||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
12249677 |
caatctagcttcaaacaaattacaaggacaaattccgttttcattatttaacttgactcaacttgttacattagattgttcgcataacaaatta |
12249584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 25521758 - 25521972
Alignment:
| Q |
33 |
tcaaacgaatttaaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatcttt |
132 |
Q |
| |
|
|||||| ||||| || || ||||||| ||| |||||| ||| ||| ||| | |||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
25521758 |
tcaaacaaatttcaagtattagattttagttataacaaatttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatcttt |
25521857 |
T |
|
| Q |
133 |
catacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattcc |
232 |
Q |
| |
|
||||||||||||| || ||||||| ||||| || || || |||||||||||| ||||||||||| |||||||| ||||| |||| |||||| ||||| |
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|
| T |
25521858 |
catacaattcatttagaggtcaaatcccagacgtgttcggtgggatgaccaaattgcaagaactcgatctatattttaacaaattagaaggacagattcc |
25521957 |
T |
|
| Q |
233 |
actttccttatttaa |
247 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
25521958 |
atcttcgttatttaa |
25521972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 332
Target Start/End: Complemental strand, 11119377 - 11119138
Alignment:
| Q |
93 |
tcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaag |
192 |
Q |
| |
|
|||||||||||||||| || || ||| |||||||| |||| | |||| |||| ||| ||| ||| |||||||| ||||| |||||||| |||||||||| |
|
|
| T |
11119377 |
tcactttcaaaccttcaacaacttattcacttggatatttcttccaatgcatttagcggtccaataccagatgtgtttggtgggatgacaaaactgcaag |
11119278 |
T |
|
| Q |
193 |
aactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaag |
292 |
Q |
| |
|
||||| || ||| ||||| |||| ||||||||||||| || |||||||| |||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
11119277 |
aactcgacttagattataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattaggttgttctaataataaattaga |
11119178 |
T |
|
| Q |
293 |
aggtccattgccgaataaaattacaggttttcaacagcta |
332 |
Q |
| |
|
||||| |||| || ||||||||||| || ||| ||||| |
|
|
| T |
11119177 |
tggtcccctgcccaacaaaattacagggttccaaaagcta |
11119138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 11119655 - 11119555
Alignment:
| Q |
31 |
tgtcaaacgaatttaaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatct |
130 |
Q |
| |
|
|||||||| ||||| ||| | ||||||||||| |||||| |||| ||||| | ||||||||| |||||||||||| || |||||| |||||||||| |
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|
| T |
11119655 |
tgtcaaacaaatttcaaaaattagatttgagtcataacaaaattgaaggtgtggttccaacatcaatttcaaaccttcaacaactcattcacttggatct |
11119556 |
T |
|
| Q |
131 |
t |
131 |
Q |
| |
|
| |
|
|
| T |
11119555 |
t |
11119555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 8524302 - 8524203
Alignment:
| Q |
56 |
tttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaa |
155 |
Q |
| |
|
||||||| |||||| |||| |||||| || ||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
8524302 |
tttgagtaataacaaaattgaaggtgagcttccaacatcactatcaaaccttcgtcatctcatttacttggatgtttcatacaattcatttagcggtcaa |
8524203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 8524190 - 8524053
Alignment:
| Q |
240 |
ttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggtccattgccgaataaaattacaggttttcaacagctagttcatt |
339 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||| || || || |||| ||||||| ||||| ||||| | ||| |
|
|
| T |
8524190 |
ttatttaacttgactcatcttgttactttagattgttctcataataaattagatggtcccttacccaacaaaactacaggtcttcaaaagctaactaatt |
8524091 |
T |
|
| Q |
340 |
ttcgtttaaatgacaaccgtctaaacggaacaattcct |
377 |
Q |
| |
|
| || |||||||||||| ||||| || ||||||||| |
|
|
| T |
8524090 |
tgcgattaaatgacaacttgctaaatggtacaattcct |
8524053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 15590791 - 15590744
Alignment:
| Q |
52 |
tagatttgagtggtaacaagattggaggtgaactaccaacatcacttt |
99 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || ||||||||||||| |
|
|
| T |
15590791 |
tagatttgagtggtaacaaaattgaaggtgagctgccaacatcacttt |
15590744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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