View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17923_low_4 (Length: 384)
Name: NF17923_low_4
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17923_low_4 |
 | |
|
| [»] scaffold0122 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 6344254 - 6343942
Alignment:
| Q |
30 |
taaagacaattaaaccaatcataatacaccaaattatatttcttaccaactcgaccaacaaatcatcatcaaaacaccatattaattcgagagattatca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6344254 |
taaagacaattaaaccaatcataatacaccaaattagatttcttaccaactcgaccaacaaatcatcatcaaaacaccatattaattcgagagattatca |
6344155 |
T |
|
| Q |
130 |
tattgcaacctgcaaccccttcttgaaaaataactttgttgtgacccaaccaaagaatccaacgatagtcaaccaaataagaaaacaagttcttgtcaaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6344154 |
tattgcaacctgcaaccccttcttgaaaaataactttgttgtgacccaaccaaagaatccaacgatagtcaaccaaataagaaaacaagttcttgtcaaa |
6344055 |
T |
|
| Q |
230 |
cgcttattcaagaccaagttcatacgcataaagagttgttgaacaccttcattatgttttacaccttgaatactcatcaaattatttacgatggaccata |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6344054 |
cgcttattcaagaccaagttcatacgcataaagagttgttgaacaccttcattatgttttacaccttgaatactcatcaaattatttacgatggaccata |
6343955 |
T |
|
| Q |
330 |
cattataagagaa |
342 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6343954 |
cattataagagaa |
6343942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 1051253 - 1051319
Alignment:
| Q |
103 |
acaccatattaattcgagagattatcatattgcaacctgcaaccccttcttgaaaaataactttgtt |
169 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| | |||||||||||| ||||||||| ||||| |
|
|
| T |
1051253 |
acaccattttaatttgagagattatcgaattgcaatccacaaccccttcttaaaaaataacattgtt |
1051319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 342
Target Start/End: Original strand, 1051375 - 1051494
Alignment:
| Q |
225 |
tcaaacgcttattcaagaccaagttcatacgcataaagagttgttgaacaccttcattatgttttacaccttgaat---actcatcaaattatttacgat |
321 |
Q |
| |
|
|||| ||||||||||||||||| || | | ||||||||| |||||||| || |||||| |||||||||||| | || |||||||||||||| | |
|
|
| T |
1051375 |
tcaagcgcttattcaagaccaaatttct-cacataaagagatgttgaacgccgtcattacaatttacaccttgatttaaacccatcaaattatttattgt |
1051473 |
T |
|
| Q |
322 |
ggaccatacattataagagaa |
342 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
1051474 |
ggaccatatattataagagaa |
1051494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 41997351 - 41997413
Alignment:
| Q |
277 |
ttcattatgttttacaccttgaatactcatcaaattatttacgatggaccatacattataaga |
339 |
Q |
| |
|
||||||||| |||||||||||||||| |||| | ||||||| | |||||||||||||||||| |
|
|
| T |
41997351 |
ttcattatggtttacaccttgaatacccatctacttatttatcaaggaccatacattataaga |
41997413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 1851 - 1779
Alignment:
| Q |
266 |
tgttgaacaccttcattatgttttacaccttgaatactcatcaaattatttacgatggaccatacattataag |
338 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||| | |||| ||||||||| | ||||| |||||||||||| |
|
|
| T |
1851 |
tgttaaacaccttcattataatttagaccttgaattcccatccaattatttagggtggacaatacattataag |
1779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University