View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17923_low_7 (Length: 319)

Name: NF17923_low_7
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17923_low_7
NF17923_low_7
[»] scaffold0519 (1 HSPs)
scaffold0519 (15-173)||(5314-5476)
[»] chr8 (3 HSPs)
chr8 (15-173)||(11224363-11224525)
chr8 (10-45)||(40676781-40676816)
chr8 (10-48)||(4429603-4429641)
[»] chr1 (4 HSPs)
chr1 (247-319)||(47385068-47385140)
chr1 (10-53)||(17416576-17416619)
chr1 (10-64)||(52073277-52073331)
chr1 (11-47)||(9314915-9314951)
[»] chr3 (3 HSPs)
chr3 (10-64)||(32859009-32859063)
chr3 (10-64)||(1132782-1132836)
chr3 (17-62)||(33281572-33281617)
[»] chr6 (4 HSPs)
chr6 (6-67)||(26683492-26683552)
chr6 (6-67)||(24379778-24379839)
chr6 (10-64)||(33938971-33939025)
chr6 (10-44)||(34557040-34557074)
[»] chr7 (3 HSPs)
chr7 (12-64)||(7347733-7347785)
chr7 (10-48)||(36907463-36907501)
chr7 (10-64)||(23465847-23465901)
[»] chr4 (2 HSPs)
chr4 (10-67)||(9021114-9021171)
chr4 (6-48)||(56118058-56118100)
[»] chr2 (2 HSPs)
chr2 (10-57)||(39913453-39913500)
chr2 (10-48)||(39820020-39820058)
[»] chr5 (1 HSPs)
chr5 (6-38)||(35042380-35042412)


Alignment Details
Target: scaffold0519 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 5314 - 5476
Alignment:
Q  15 gattttaccattttctcctatattttcaaccctctaaaaccttcccttcctctgtgc----aactcccaaacaaaaccttaagatacaaagctcatatcc 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |    |||||||||||||| ||||||||||||||| ||||||||    
T  5314 gattttaccattttctcctatattttcaaccctctaaagccttcccttcctctctcctataaactcccaaacaaagccttaagatacaaagttcatatcc 5413  T
Q  111 cttcgggaccattgtttaatggcctataattccactttaattaataaaagttcccctccctca 173  Q
      ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5414 tctcgcgaccattatttaatggcctataattccactttaattaataaaagttcccctccctca 5476  T

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Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 11224525 - 11224363
Alignment:
Q  15 gattttaccattttctcctatattttcaaccctctaaaaccttcccttcctctgtgc----aactcccaaacaaaaccttaagatacaaagctcatatcc 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |    |||||||||||||| ||||||||||||||| ||||||||    
T  11224525 gattttaccattttctcctatattttcaaccctctaaagccttcccttcctctctcctataaactcccaaacaaagccttaagatacaaagttcatatcc 11224426  T
Q  111 cttcgggaccattgtttaatggcctataattccactttaattaataaaagttcccctccctca 173  Q
      ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11224425 tctcgcgaccattatttaatggcctataattccactttaattaataaaagttcccctccctca 11224363  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 40676816 - 40676781
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaacc 45  Q
    ||||||||||||| ||||||||||||||||||||||    
T  40676816 tgaaagattttacaattttctcctatattttcaacc 40676781  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 4429603 - 4429641
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctc 48  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  4429603 tgaaagattttaccattttcccatatattttcaaccctc 4429641  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 47385068 - 47385140
Alignment:
Q  247 attattttcctctcttcatacctaaagctaaaaccacttgcttccaattcgaaaaaacaagctcataacaaac 319  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  47385068 attatattcctctcttcatacctaaaactaaaaccacttgcttccaatccgaaaaaacaaactcataacaaac 47385140  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 17416619 - 17416576
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaa 53  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||    
T  17416619 tgaaagattgtaccattttctcctatatttccaaccctccaaaa 17416576  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 52073331 - 52073277
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcc 64  Q
    ||||||||||||| |||||| ||||||||| |||||||| | | |||||||||||    
T  52073331 tgaaagattttacaattttcccctatatttccaaccctccagagccttcccttcc 52073277  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 9314951 - 9314915
Alignment:
Q  11 gaaagattttaccattttctcctatattttcaaccct 47  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  9314951 gaaagattttagcattttctcctgtattttcaaccct 9314915  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 32859009 - 32859063
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcc 64  Q
    |||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||    
T  32859009 tgaaagattttaccattttcccctatatttccaaccctccaaagccttcccttcc 32859063  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 1132836 - 1132782
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcc 64  Q
    ||||||||||||  ||||||  |||||||| |||||||||||| |||||||||||    
T  1132836 tgaaagattttataattttccactatatttccaaccctctaaagccttcccttcc 1132782  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 33281617 - 33281572
Alignment:
Q  17 ttttaccattttctcctatattttcaaccctctaaaaccttccctt 62  Q
    ||||||||||||| |||||||||||||||||| |||  ||||||||    
T  33281617 ttttaccattttcccctatattttcaaccctccaaagtcttccctt 33281572  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 26683492 - 26683552
Alignment:
Q  6 aatatgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcctct 67  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| ||  ||||||||    
T  26683492 aatatgaaagattt-atcattttctcctatattttcaaccctctaaaactttatcttcctct 26683552  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 24379778 - 24379839
Alignment:
Q  6 aatatgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcctct 67  Q
    ||||||||||||||||| |||||  |||||||||||||||||| |||  |||| ||||||||    
T  24379778 aatatgaaagattttactatttttccctatattttcaaccctccaaagtcttctcttcctct 24379839  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 33939025 - 33938971
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcc 64  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||| ||| |||||    
T  33939025 tgaaagattttatcattttcccttatattttcaaccctccaaaactttctcttcc 33938971  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 34557074 - 34557040
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaac 44  Q
    |||||||||||||||||||||||||||||| ||||    
T  34557074 tgaaagattttaccattttctcctatatttccaac 34557040  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 7347785 - 7347733
Alignment:
Q  12 aaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcc 64  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||| |||||    
T  7347785 aaagattttaccattttttcctatatttccaaccctctaaaacattctcttcc 7347733  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 36907463 - 36907501
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctc 48  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36907463 tgaaagattttacctttttctcctatattttcaaccctc 36907501  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 23465901 - 23465847
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcc 64  Q
    |||||||||||||||||||| ||||||||| |||||||  |||  ||||||||||    
T  23465901 tgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcc 23465847  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 9021114 - 9021171
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaaccttcccttcctct 67  Q
    |||||||||||||||||||| ||||||||| |||||||  |||  |||||||||||||    
T  9021114 tgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcctct 9021171  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 56118058 - 56118100
Alignment:
Q  6 aatatgaaagattttaccattttctcctatattttcaaccctc 48  Q
    |||||||||||||||||| ||||| | ||||||||||||||||    
T  56118058 aatatgaaagattttaccgttttcccttatattttcaaccctc 56118100  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 39913453 - 39913500
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctctaaaacctt 57  Q
    ||||||||||||||||||||  |||||||| |||||||| ||||||||    
T  39913453 tgaaagattttaccattttccactatatttccaaccctcgaaaacctt 39913500  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 39820020 - 39820058
Alignment:
Q  10 tgaaagattttaccattttctcctatattttcaaccctc 48  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  39820020 tgaaagattttaccattttcccctatatttccaaccctc 39820058  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 35042380 - 35042412
Alignment:
Q  6 aatatgaaagattttaccattttctcctatatt 38  Q
    |||||||||||||||||||||||||||| ||||    
T  35042380 aatatgaaagattttaccattttctcctgtatt 35042412  T

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