View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17923_low_8 (Length: 316)
Name: NF17923_low_8
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17923_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 27984451 - 27984734
Alignment:
| Q |
19 |
aaccttttcaaatgaaatgctgcaactgaaggagctttataaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984451 |
aaccttttcaaatgaaatgctgcaactgaaggagctttatcaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttc |
27984550 |
T |
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| Q |
119 |
catccatcttttctaccttggtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984551 |
catccatcttttctaccttggtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatc |
27984650 |
T |
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| Q |
219 |
agaagagtgaccacagcagcaacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984651 |
agaagagtgaccacagcagcaacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
27984734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 28041753 - 28042036
Alignment:
| Q |
19 |
aaccttttcaaatgaaatgctgcaactgaaggagctttataaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041753 |
aaccttttcaaatgaaatgctgcaactgaaggagctttatcaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttc |
28041852 |
T |
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| Q |
119 |
catccatcttttctaccttggtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041853 |
catccatcttttctaccttggtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatc |
28041952 |
T |
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| Q |
219 |
agaagagtgaccacagcagcaacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041953 |
agaagagtgaccacagcagcaacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
28042036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 27239024 - 27239309
Alignment:
| Q |
19 |
aaccttttcaaatgaaatgctgcaactgaaggagctttataaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttc |
118 |
Q |
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|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || || ||||||||| |
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| T |
27239024 |
aaccttttcaaatgaaatactgcaattgaaggagctttatcaagcataagctgtttttccatagttacctcttggttgcagttgctgcatctaaactttc |
27239123 |
T |
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| Q |
119 |
catccatcttttctaccttggtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatc |
218 |
Q |
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|| ||| || ||||||| |||||| ||||| |||||| ||| ||||| | | || |||||||||||||||||||||| | |||||| ||||| || | |
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| T |
27239124 |
cagccagctgttctaccctggtgatagatttcagagcatgcggaatgcttgccgcaagttctatctctaaactcatgtccttaaatggcacaaatgtagc |
27239223 |
T |
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| Q |
219 |
agaagagtgacc---acagcagcaacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataa |
301 |
Q |
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||||||| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27239224 |
cgaagagtaaccacgacagcagcaacatcgaaactgagtaataacaaacatcaatacaagataaaattaaaatcatcggagaataa |
27239309 |
T |
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