View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17923_low_9 (Length: 295)
Name: NF17923_low_9
Description: NF17923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17923_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 33552476 - 33552217
Alignment:
| Q |
13 |
aaaatagactcacaccaaccccagcttgaaaactataaacagatgatccatatgtgcatattttactttgttactttgtagctacaagagcctatttcat |
112 |
Q |
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| T |
33552476 |
aaaatagactcacaccaaccccagcttgaaaactataaacagatgctccat--gtgcatattttactttgttactttgtagctacaagagcctatttcat |
33552379 |
T |
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| Q |
113 |
tttcaatgaagattcattcattctttctaagattcactcattcttttctaagagactaaaagaaagacaaaggagaaaaacataactatggacaatcaat |
212 |
Q |
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| T |
33552378 |
tttcaatgaagattcattcattctttctaagattcgctcattcttttctaagagactaaaa-aaagacaaaggagaaaaacataactatggacaatcaat |
33552280 |
T |
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| Q |
213 |
tgaatatagtaaaatgaaaatataaagaaatagtttgaacatcttttcacttgtagttgtgta |
275 |
Q |
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| T |
33552279 |
tgaatatagtaaaatgaaaatataaagaaatagtttgaacatcttttcacttgtagttgtgta |
33552217 |
T |
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Back To:
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 31782487 - 31782405
Alignment:
| Q |
186 |
agaaaaacataactatggacaatcaattgaatatagtaaaatgaaaatataaagaaatagtttgaacatcttttcacttgtag |
268 |
Q |
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|||||||||| ||| | |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
31782487 |
agaaaaacatgactgtagacaatcaattgaatatagtaaaacgaaaatataaagaaagagttttaacatcttttcgcttgtag |
31782405 |
T |
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