View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17924_high_2 (Length: 780)
Name: NF17924_high_2
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 700; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 18 - 769
Target Start/End: Complemental strand, 217221 - 216470
Alignment:
| Q |
18 |
acaattactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
217221 |
acaattactgttcccgatggttgtgattgggaaatgaaactgaagaaatgcggcaatgacgtttacttttgcaacaaatggcaacagtttgcagaatact |
217122 |
T |
|
| Q |
118 |
attctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgc |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
217121 |
attctatagggtatggttccttcctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctattgagatttgctatcc |
217022 |
T |
|
| Q |
218 |
attcaaaactcaaagtacaaatggagaaacaaacacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtgacaatcatgcttctaaaaga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
217021 |
attcaaaactcaaagtacaaatggagaaacaaaaacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtgacaatcatgcttctaaaaga |
216922 |
T |
|
| Q |
318 |
gcagaggaagctgccaaggaattcaatccaaaaaacccttacttttgttccaaaattcttaagggaaagtatgtggtgaggattttactttaaagcaaat |
417 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
216921 |
gcagaggaagctgccaaagaatttaatccaaaaaacccttatttttgttccaaaattcttaagggaaattatgtggtgaggattttactttaaagcaaat |
216822 |
T |
|
| Q |
418 |
gttgagttatttatttatgttgccactttaattgatatctcatttaatgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgttc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
216821 |
gttgagttatttatttatgttgccactttaattaatatctcatttaatgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgttc |
216722 |
T |
|
| Q |
518 |
ctataatgctccaaaattctcacggaaagcagtgggaagtttcatgtgcaatgcatgatgccaaatcatcatcaacagcaatgataatatcaaggggatt |
617 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
216721 |
ctataaagctccaaaattctcacggaaagcagtgggaagtttcatgtgcaatgcatgatgccaaatcatcatcaacagcaatgataatatcaaggggatt |
216622 |
T |
|
| Q |
618 |
tcctatatttctaaggggcaacaatctgtctcatggagattattgtgtgttcgagctgatcaataagacgccggatgtgctaaaagtcacaatgtttcgt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
216621 |
tcctatatttctaaggggcaacaatctgtctcatggagattattgtgtgttcgagctgatcaataagacgccggatgtgctaaaagtcacaatgtttcgt |
216522 |
T |
|
| Q |
718 |
gtgattgactattacgtttaataacttatctatcctctccactttgatgatg |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
216521 |
gtgattgactattacgtttaataacttatcgatcctctccactttgatgatg |
216470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 766
Target Start/End: Complemental strand, 222166 - 221421
Alignment:
| Q |
18 |
acaattactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatact |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222166 |
acaattactgttcccgatggctgtgattgggaaatggaactgaagaaatgcggcaacgacgtttacttttgcaacaaatggcaacagtttgcagaatact |
222067 |
T |
|
| Q |
118 |
attctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgc |
217 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| | |
|
|
| T |
222066 |
attctatagggtatggttccttcttgcgtttcaaatatgaaggggattcaaagtttaatgttgttatatttgatgtaacttctgttgagatttgctatcc |
221967 |
T |
|
| Q |
218 |
attcaaaactcaaagtacaaatggagaaacaaacacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtgacaatcatgcttctaaaaga |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
221966 |
attcaaaactcaaagtattaatggagaaacaaacacaaagtgtcatagtcctaggaaaaggtccaaggttgaaacaagtgacaatcatgcttctaaaaga |
221867 |
T |
|
| Q |
318 |
gcagaggaagctgccaaggaattcaatccaaaaaacccttacttttgttccaaaattcttaagggaaagtatgtggtgaggattttactttaaagcaaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
221866 |
tcagaggaagctgccaaggaattcaatccaaaaaacccttacttttgttccaaaattcttaagagaaaatatgtggtgagaattttactttaaagcaaat |
221767 |
T |
|
| Q |
418 |
gttgagttatttatttatgttgccactttaattgatatctcatttaatgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgttc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
221766 |
gttgagttatttatttatgttgccactttaattgatatctcatttaatgtgcagtatgttaatgctgattttgcttcaaagtatctaaagccaaatgttc |
221667 |
T |
|
| Q |
518 |
ctataatgctccaaaattctcacggaaagcagtgggaagtttcatgtgcaatgcatgatgccaaatcatcatcaacagcaatgataatatcaaggggatt |
617 |
Q |
| |
|
|||||| | |||||| |||||| || ||||||||||||||| | | ||||||| ||||| || |||| ||||||||| |||| | |||||||| |
|
|
| T |
221666 |
ctataaagatccaaacttctcatggtgagcagtgggaagtttttggcatattgcatgacgccaattcgtcat---cagcaatgaaaataacgaggggatt |
221570 |
T |
|
| Q |
618 |
tcctatatttctaaggggcaacaatctgtctcatggagattattgtgtgttcgagctgatcaataagacgccggatgtgctaaaagtcacaatgtttcgt |
717 |
Q |
| |
|
| | ||||||| ||||| ||| |||||||| |||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||||||| |
|
|
| T |
221569 |
ttcaatatttcaaagggacaataatctgtcacatggagattattgtgtgtttgagctgatcaagaataatccgttggtgctaaaagtcacaatgtttcgt |
221470 |
T |
|
| Q |
718 |
gtgattgactattacgtttaataacttatctatcctctccactttgatg |
766 |
Q |
| |
|
| | ||||||| || |||| ||||||| ||||||||| ||||||||| |
|
|
| T |
221469 |
gcggctgactatggcgattaacaacttatgtatcctctctactttgatg |
221421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 210617 - 210338
Alignment:
| Q |
22 |
ttactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaa---atggcaacagtttgcagaatacta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||| | || |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
210617 |
ttactgttcccgatggttgtgattgggaaatggacttgaagaaatgtggcgaggatgtttacttttgcaacaaggaatggcaacagtttgcagaatacta |
210518 |
T |
|
| Q |
119 |
ttctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgca |
218 |
Q |
| |
|
|||| || | || |||| ||| |||| ||||| ||| |||||| ||||||| ||||| || ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
210517 |
ttctttaagatacggttgcttcctgtctttcagatacgaagggaattcaaattttagcgttattatatttgatgcaacttctgttgaaatttgctatcca |
210418 |
T |
|
| Q |
219 |
ttcaaaactcaaagtacaaatggagaaacaaacacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtga |
298 |
Q |
| |
|
|| ||||||| |||||| | ||||||||||||||| ||| || ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
210417 |
ttaaaaactccaagtactagtggagaaacaaacaccgagtgtcctaggcctatgaaaaggtccaaggttgaaacaagtga |
210338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 79 - 291
Target Start/End: Complemental strand, 225039 - 224827
Alignment:
| Q |
79 |
tttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgt |
178 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||| || | ||||||| ||| ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
225039 |
tttacttttgcaacaaatggaaacaatttgcagaatactattctttaagatatggttgcttcatgtctttcaaatatgaagggaattcaaagtttagtgt |
224940 |
T |
|
| Q |
179 |
ctttatatttgatgcaacttctgttgagatttgctatgcattcaaaactcaaagtacaaatggagaaacaaacacaaagtttcatagtcctaggaaaagg |
278 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||| ||| || ||| |||| ||||||| |
|
|
| T |
224939 |
tattatatttgatgtaacttctgttgagatttgctatccactcaaaactccaagtactaatggagaaacaaacacagagtgtcctagacctacgaaaagg |
224840 |
T |
|
| Q |
279 |
tccaaggttgaaa |
291 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
224839 |
tccagggttgaaa |
224827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 197339 - 197063
Alignment:
| Q |
22 |
ttactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactattc |
121 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||| | |||||||| ||||||||||||||| ||||| |||| ||||| || |||| ||| |||||||||| |
|
|
| T |
197339 |
ttacagttcccgatggtcgtgattggaaaatgagattgaagaaacgcggcaatgacattttcttttccaacgaatgggaagagttcgcaaaatactattc |
197240 |
T |
|
| Q |
122 |
tatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgcattc |
221 |
Q |
| |
|
|||||||||||| || || | ||||||||| |||||| |||||||||||||||| |||||||||| | ||||| |||||||||||| ||| |||| |
|
|
| T |
197239 |
attagggtatggttgctacctatctttcaaatacgaagggaattcaaagtttagtgttattatatttgacgtaacttatgttgagatttgttatccatta |
197140 |
T |
|
| Q |
222 |
aaaactcaaagtacaaatggagaaacaaacacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtga |
298 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||| | | |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
197139 |
aaaactccaagtgttaatggagaaccaaacacaaaatgtgctagtcctacgaaaaggtccaaggttgaaacaagtga |
197063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 33 - 294
Target Start/End: Original strand, 204865 - 205126
Alignment:
| Q |
33 |
gatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatg |
132 |
Q |
| |
|
|||||| |||||||| |||| | |||||||| |||||||||||||| ||||| |||| |||||||| |||||||| |||||||||| |||| | || |
|
|
| T |
204865 |
gatggtcgtgattggagaatgagattgaagaaacacggcaatgacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatgtg |
204964 |
T |
|
| Q |
133 |
gttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgcattcaaaactcaaag |
232 |
Q |
| |
|
||| || || | ||||||||| ||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||| || ||||||||| || |
|
|
| T |
204965 |
gttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttgttatatttgatgtaacttcggttgagatttgctatccactcaaaactccgag |
205064 |
T |
|
| Q |
233 |
tacaaatggagaaacaaacacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaa |
294 |
Q |
| |
|
||| |||||||||||||| ||| | | || || |||||| ||||| || | ||||||||||| |
|
|
| T |
205065 |
tactaatggagaaacaaatacacaatgtcctactcctagaaaaagttcaagggttgaaacaa |
205126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 198500 - 198274
Alignment:
| Q |
21 |
attactgttcccgatggttgtgat---tgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatact |
117 |
Q |
| |
|
||||||||||| |||||| || || |||||||||| |||||||||||| ||| | || ||| | || ||||||| |||||||||||||||||||||| |
|
|
| T |
198500 |
attactgttcctgatggtcgtcatgaatgggaaatgggactgaagaaatgtggcgagcacgttttccttagcaacaattggcaacagtttgcagaatact |
198401 |
T |
|
| Q |
118 |
attctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgc |
217 |
Q |
| |
|
||| ||| ||||||| | | | |||||| ||| ||||| |||||||||||| ||| |||||| |||| |||||||||||||||||| ||| | |
|
|
| T |
198400 |
attgtatttattatggttgttatttagatttcaactatcaagggaattcaaagtttaatgttgttatatatgatacaacttctgttgagatttcttattc |
198301 |
T |
|
| Q |
218 |
attcaaaactcaaagtacaaatggaga |
244 |
Q |
| |
|
||||||||||| |||||| |||||||| |
|
|
| T |
198300 |
attcaaaactccaagtactaatggaga |
198274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 226339 - 226108
Alignment:
| Q |
21 |
attactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactatt |
120 |
Q |
| |
|
|||||||||||||||||| |||| ||| | |||||||| |||||||| ||| | |||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
226339 |
attactgttcccgatggtcgtgagtggaatatggaactaaagaaatgtggcggccaaattttcttttgcaacaattggcaacagtttgcagaatactatt |
226240 |
T |
|
| Q |
121 |
ctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgcatt |
220 |
Q |
| |
|
||| ||||||| | | | |||||||||||||||| |||||||||| | ||| |||||| ||| ||||||||||||||||| ||| |||| |
|
|
| T |
226239 |
gtatttattatggttgttatttagatttcaaatatgaagggaattcaaagttcaatgttgttatatacgatagaacttctgttgagatttcttatccatt |
226140 |
T |
|
| Q |
221 |
caaaactcaaagtacaaatggagaaacaaaca |
252 |
Q |
| |
|
| |||||| || || ||||||||| |||||| |
|
|
| T |
226139 |
ccaaactcggaggactaatggagaaccaaaca |
226108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 636 - 729
Target Start/End: Complemental strand, 196694 - 196601
Alignment:
| Q |
636 |
caacaatctgtctcatggagattattgtgtgttcgagctgatcaataagacgccggatgtgctaaaagtcacaatgtttcgtgtgattgactat |
729 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||| ||||| |||| ||||| ||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
196694 |
caacaatctgtcacatcgagattattgtgtgtatgagctcatcaagaagaagccggttgtgctagaagtcacaatgtttcgtgcggttgactat |
196601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 211896 - 211665
Alignment:
| Q |
21 |
attactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactatt |
120 |
Q |
| |
|
||||| |||||||||| | ||| ||||| |||||||| |||||||| ||| | |||| |||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
211896 |
attaccgttcccgatgctcttgagtgggatatggaactcaagaaatgtggcggccaaattttcttttgcaacaattggcagcaatttgcagaatactatt |
211797 |
T |
|
| Q |
121 |
ctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgcatt |
220 |
Q |
| |
|
|||| ||||||| | | | ||||||||| |||||| |||||||||| | ||| |||||| ||| |||||||||||||||||| ||| |||| |
|
|
| T |
211796 |
ctatttattatggttgttatttagatttcaaatacgaagggaattcaaagttcaatgttgttatatacgatacaacttctgttgagatttcttatccatt |
211697 |
T |
|
| Q |
221 |
caaaactcaaagtacaaatggagaaacaaaca |
252 |
Q |
| |
|
| |||||| || || ||||||||| |||||| |
|
|
| T |
211696 |
ccaaactcggaggactaatggagaagcaaaca |
211665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 197028 - 196964
Alignment:
| Q |
303 |
catgcttctaaaagagcagaggaagctgccaaggaattcaatccaaaaaacccttacttttgttc |
367 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
197028 |
catgcttctacaagagcagaggttgctgccaatgaattcaaaccaaaaaacccttatttttgttc |
196964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 203459 - 203559
Alignment:
| Q |
21 |
attactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactatt |
120 |
Q |
| |
|
||||| |||||||||||| |||| ||||| |||||||| |||||||| ||| | ||| |||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
203459 |
attaccgttcccgatggtcgtgagtgggatatggaactcaagaaatgtggcggccaagttttcttttgcaacaattggcaacactttgcagaatactatt |
203558 |
T |
|
| Q |
121 |
c |
121 |
Q |
| |
|
| |
|
|
| T |
203559 |
c |
203559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 497 - 565
Target Start/End: Complemental strand, 225908 - 225840
Alignment:
| Q |
497 |
agcatctgaatccaaatgttcctataatgctccaaaattctcacggaaagcagtgggaagtttcatgtg |
565 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
225908 |
agcatctgaagccaaatgttccgttcatgctccaaaattatcaaggaaagcagtgggaagtttcttgtg |
225840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 205165 - 205226
Alignment:
| Q |
303 |
catgcttctaaaagagcagaggaagctgccaaggaattcaatccaaaaaacccttacttttg |
364 |
Q |
| |
|
||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
205165 |
catgcttttaaaagtgcagaggttgctgccaatgaattcaatccaaaaaacccttatttttg |
205226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 497 - 560
Target Start/End: Complemental strand, 211445 - 211382
Alignment:
| Q |
497 |
agcatctgaatccaaatgttcctataatgctccaaaattctcacggaaagcagtgggaagtttc |
560 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
211445 |
agcatctgaagccaaatgttccgttcatgctccaaaattctcaaaaaaagcagtgggaagtttc |
211382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 465 - 516
Target Start/End: Complemental strand, 224660 - 224609
Alignment:
| Q |
465 |
tgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgtt |
516 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
224660 |
tgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgtt |
224609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 558
Target Start/End: Original strand, 205246 - 205376
Alignment:
| Q |
428 |
ttatttatgttgccactttaattgatatctcatttaatgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgttcctataatgct |
527 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||| || ||||||| |||||| |||| | |||||| |||| |||| | ||||||||||| || || |
|
|
| T |
205246 |
ttatttatgttgtcacttaaattgatcactcatctattgtgcagaatgttactgctaaatttgctcaaaagtatctaatgccaaatgttccaatcgcact |
205345 |
T |
|
| Q |
528 |
ccaaaattctcacggaaagcagtgggaagtt |
558 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||| |
|
|
| T |
205346 |
ccaaaattctcaaggaaagcattggaaagtt |
205376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 483 - 557
Target Start/End: Complemental strand, 196841 - 196767
Alignment:
| Q |
483 |
tgattttgcttcaaagcatctgaatccaaatgttcctataatgctccaaaattctcacggaaagcagtgggaagt |
557 |
Q |
| |
|
|||||||||| |||| || |||| ||||| ||||||| || ||||||||||||| | ||||| ||||||||||| |
|
|
| T |
196841 |
tgattttgctgaaaagtatttgaaaccaaaggttcctacaaagctccaaaattctgatggaaaacagtgggaagt |
196767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 559
Target Start/End: Complemental strand, 198020 - 197986
Alignment:
| Q |
525 |
gctccaaaattctcacggaaagcagtgggaagttt |
559 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
198020 |
gctccaaaattctcaaggaaagcagtgggaagttt |
197986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 9e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 304 - 730
Target Start/End: Complemental strand, 29838180 - 29837764
Alignment:
| Q |
304 |
atgcttctaaaagagcagaggaagctgccaaggaattcaatccaaaaaacccttacttttgttccaaaattcttaagggaaagtatgtggtgaggatttt |
403 |
Q |
| |
|
||||||||||||||| |||||| || ||||| ||| |||| ||||| |||||||| ||| |||||||||| |||||||||| |||| |||||| |||| |
|
|
| T |
29838180 |
atgcttctaaaagagtagaggatgccgccaaagaactcaacccaaacaacccttattttcgttccaaaatcgttaagggaaaatatgcggtgagattttt |
29838081 |
T |
|
| Q |
404 |
actttaaagcaaatgttgagttatttatttatgttgccactttaattgatatctcatttaatgtgcagtatgttaatgctgattttgcttcaaagcatct |
503 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||||| ||||||| |||||| | | |||||||||||||| |||||||||| ||||| |||| |
|
|
| T |
29838080 |
actttaaagtaaatgttgagttat----ttatgtttccacttaaattgatctctcatccattatgcagtatgttaattttgattttgctacaaagtatct |
29837985 |
T |
|
| Q |
504 |
gaatccaaatgttcctataatgctccaaaattctcacggaaagcagtgggaagtttcatgtgcaatgcatgatgccaaatcatcatcaacagcaatgata |
603 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||||||| ||| ||||||||||||| | | | || ||||||| ||||| ||||||| | |
|
|
| T |
29837984 |
aaagccaaatattcctataaagctccaaaattctcatggagagcagtgggaagtgtttggcatctttcacgatgccagatcat------cagcaatacaa |
29837891 |
T |
|
| Q |
604 |
atatcaaggggatttcctatatttctaaggggcaacaatctgtctcatggagattattgtgtgttcgagctgatcaataagacgccggatgtgctaaaag |
703 |
Q |
| |
|
||| | ||||||||| ||||||||| || || |||||| ||||| ||||||||||||||||||| ||||||||||| | | |||| ||||||||||| |
|
|
| T |
29837890 |
ataacgaggggattttctatatttcaaaaggacaacaacctgtcgtatggagattattgtgtgtttgagctgatcaagacaaaaccggttgtgctaaaag |
29837791 |
T |
|
| Q |
704 |
tcacaatgtttcgtgtgattgactatt |
730 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
29837790 |
tcacaatgtttcgtgctattgactatt |
29837764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 29838496 - 29838216
Alignment:
| Q |
18 |
acaattactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatact |
117 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| ||||||||||||||||| | ||| | | ||| ||||||||||||||||||| |||||| |||||| | |
|
|
| T |
29838496 |
acaattactgttccagatggtcgtgtatggaaaatggaactgaagaaacgtggcgagaatgttttcttttgcaacaaatggcaagagtttgtagaatatt |
29838397 |
T |
|
| Q |
118 |
attctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgc |
217 |
Q |
| |
|
|||||||||| ||||||| ||| | | |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
29838396 |
attctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcc |
29838297 |
T |
|
| Q |
218 |
attcaaaactcaaagtacaaatggagaaacaaacacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtga |
298 |
Q |
| |
|
||| |||||| |||||| ||||||||| |||| ||||| | || |||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
29838296 |
tttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtga |
29838216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 6903639 - 6903364
Alignment:
| Q |
22 |
ttactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactattc |
121 |
Q |
| |
|
|||||| ||| |||||| |||||||| |||| | |||||||| ||||||| |||||| ||||| |||| |||||||| |||||||| |||||||||| |
|
|
| T |
6903639 |
ttactgctcctgatggtcgtgattggagaatgagattgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattc |
6903540 |
T |
|
| Q |
122 |
tatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgcattc |
221 |
Q |
| |
|
|||| ||||||| || || | ||||||||| ||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||| || || |
|
|
| T |
6903539 |
attaggatatggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctatccactc |
6903440 |
T |
|
| Q |
222 |
aaaactcaaagtacaaatggagaaacaaacacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtg |
297 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| | | || || |||||| ||||| |||| |||||||||||||| |
|
|
| T |
6903439 |
aaaactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagttccagggttgaaacaagtg |
6903364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 303 - 405
Target Start/End: Complemental strand, 6903328 - 6903226
Alignment:
| Q |
303 |
catgcttctaaaagagcagaggaagctgccaaggaattcaatccaaaaaacccttacttttgttccaaaattcttaagggaaagtatgtggtgaggattt |
402 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||| |||| |||| ||||||||| |||| |
|
|
| T |
6903328 |
catgcttttaaaaatgcagaggttgctgccaatgaattcaatccaaaaaacccttatttttgttcaaaaattgctaagcgaaatcttgtggtgagaattt |
6903229 |
T |
|
| Q |
403 |
tac |
405 |
Q |
| |
|
||| |
|
|
| T |
6903228 |
tac |
6903226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 6905026 - 6904803
Alignment:
| Q |
21 |
attactgttcccgatggttgtgattgggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactatt |
120 |
Q |
| |
|
||||| ||||||| |||| |||| ||||| |||||||| |||||||| ||| | ||| |||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
6905026 |
attaccgttcccggtggtcgtgagtgggatatggaactcaagaaatgtggcggccaagttttcttttgcaacaattggcaacactttgcagaatactatt |
6904927 |
T |
|
| Q |
121 |
ctatagggtatggttcctttctgtgtttcaaatatgaaggggattcaaagtttagt-gtctttatatttgatgcaacttctgttgagatttgctatgcat |
219 |
Q |
| |
|
| || | || ||| | | | |||||| ||||||| | ||||||| ||| || || |||||| |||| |||||| ||||||||||| ||| ||| |
|
|
| T |
6904926 |
ccatcagttacagttgttatttagatttcaagtatgaagagaattcaaa-tttcgtagttgttatatatgatccaacttttgttgagatttcttatccat |
6904828 |
T |
|
| Q |
220 |
tcaaaactcaaagtacaaatggaga |
244 |
Q |
| |
|
||||||||| |||||| |||||||| |
|
|
| T |
6904827 |
tcaaaactccaagtactaatggaga |
6904803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 558
Target Start/End: Complemental strand, 6903210 - 6903063
Alignment:
| Q |
407 |
ttaaagcaaatgttgagttatttatttatgttgccactttaattgatatctcatttaatgtgcagtatgttaatgctgattttgcttcaaagcatctgaa |
506 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| ||||||| ||||| || ||||||| |||||| |||| | |||||| |||| |||| | |
|
|
| T |
6903210 |
ttaaagtaaatgttgagttat----ttatgttgtcacttaaattgatcactcatctattgtgcagaatgttactgctaaatttgctcaaaagtatctaat |
6903115 |
T |
|
| Q |
507 |
tccaaatgttcctataatgctccaaaattctcacggaaagcagtgggaagtt |
558 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||| ||||| |
|
|
| T |
6903114 |
gccaaatgttccaatcgcactccaaaattctcaaggaaagcattggaaagtt |
6903063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 46 - 267
Target Start/End: Complemental strand, 3808564 - 3808342
Alignment:
| Q |
46 |
gggaaatggaactgaagaaatgcggcaatgacatttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttcctttctgtg |
145 |
Q |
| |
|
|||||||||||||||| | ||| || |||| | ||| ||||||||||||||||||| |||| ||||||||| || ||||| ||||||| | || | |
|
|
| T |
3808564 |
gggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttc |
3808465 |
T |
|
| Q |
146 |
tttcaaatatgaaggggattc-aaagtttagtgtctttatatttgatgcaacttctgttgagatttgctatgcattcaaaactcaaagtacaaatggaga |
244 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||| |||||||||| | ||||||||||| |||||||||| | |||||||||| |||||| ||| |||| |
|
|
| T |
3808464 |
tttcaattatgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagaga |
3808365 |
T |
|
| Q |
245 |
aacaaacacaaagtttcatagtc |
267 |
Q |
| |
|
| |||||||||||| || ||||| |
|
|
| T |
3808364 |
accaaacacaaagtatcctagtc |
3808342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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