View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17924_high_20 (Length: 346)

Name: NF17924_high_20
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17924_high_20
NF17924_high_20
[»] chr7 (7 HSPs)
chr7 (190-346)||(30287564-30287720)
chr7 (18-189)||(30284815-30284985)
chr7 (25-189)||(30313329-30313492)
chr7 (23-181)||(30297285-30297442)
chr7 (25-172)||(30289793-30289939)
chr7 (286-338)||(30292831-30292883)
chr7 (25-181)||(30302490-30302631)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 190 - 346
Target Start/End: Original strand, 30287564 - 30287720
Alignment:
Q  190 ggaggatatatgtccttaaagtatattttagttaacttgattatagattttctactgttggcctgtttgcgcttttaagacacctaataaaacaagggcc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30287564 ggaggatatatgtccttaaagtatattttagttaacttgattatagattttctactgttggcctgtttgcgattttaagacacctaataaaacaagggcc 30287663  T
Q  290 aaagccacaacaacaatccaccacttggtgaccaaaacaagaagcaccaactaggta 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287664 aaagccacaacaacaatccaccacttggtgaccaaaacaagaagcaccaactaggta 30287720  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 30284815 - 30284985
Alignment:
Q  18 ccttttccaaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttaccaactcaatttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  30284815 ccttttccaaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttgccaactcaattgt 30284914  T
Q  118 gtttctttcaacacacgtcaacatgcatgccacaccatggccaaatgttcgtgcatgttaatcagtcatata 189  Q
    |||  |||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||| |||||||    
T  30284915 gttcatttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatg-taatcaatcatata 30284985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 30313329 - 30313492
Alignment:
Q  25 caaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttaccaactcaattttgtttctt 124  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| | |||||||| ||| ||||||||||||||||||| |||||||||||||||| |||    
T  30313329 caaaagaatgtccaggttcatcaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaattttgttcctt 30313428  T
Q  125 tcaacacacgtcaacatgcatgccacaccatggccaaatgttcgtgcatgttaatcagtcatata 189  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||| |||||||    
T  30313429 tcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatg-taatcaatcatata 30313492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 30297285 - 30297442
Alignment:
Q  23 tccaaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttaccaactcaattttgtttc 122  Q
    |||||||  |||||||||||||| |||||||||||||| |||||||||| |||||||| |||| |||| |||||||||||  ||| |||||||||||| |    
T  30297285 tccaaaataatgtccaggttcatcaaattcaaacaaaactccaccacca-aagttcagaaccatggttccttttcattttcgccacctcaattttgttcc 30297383  T
Q  123 tttcaacacacgtcaacatgcatgccacaccatggccaaatgttcgtgcatgttaatca 181  Q
    |||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||    
T  30297384 tttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgttaatca 30297442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 30289793 - 30289939
Alignment:
Q  25 caaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttaccaactcaattttgtttctt 124  Q
    |||||| ||||| |||||||| |||||||||||||| ||||||| |  | |||||| |||| |||| | |||||||||| ||||||||||||||||  ||    
T  30289793 caaaagaatgtctaggttcatcaaattcaaacaaaactccaccaacc-aggttcagaaccatggttccatttcatttttgccaactcaattttgttcatt 30289891  T
Q  125 tcaacacacgtcaacatgcatgccacaccatggccaaatgttcgtgca 172  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  30289892 tcaacacacgtcaaaatgcatgtcacaccatggccaaatgttggtgca 30289939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 30292831 - 30292883
Alignment:
Q  286 ggccaaagccacaacaacaatccaccacttggtgaccaaaacaagaagcacca 338  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  30292831 ggccaaaggaacaacaacaatccaccacttggtgaccaaaacaagaagcacca 30292883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 30302490 - 30302631
Alignment:
Q  25 caaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttaccaactcaattttgtttctt 124  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||  ||||||||||||| ||||              ||| |||||||||| |  ||    
T  30302490 caaaagaatgtccaggttcatcaaattcaaacaaaactccaccaccc-aagttcagtaccatggtt--------------ccacctcaattttgatcatt 30302574  T
Q  125 tcaacacacgtcaacatgcatgccacaccatggccaaatgttcgtgcatgttaatca 181  Q
    |||||||||||||| ||||||| | |||||| |||||||||| |||||  |||||||    
T  30302575 tcaacacacgtcaaaatgcatgtctcaccatagccaaatgttggtgcaaattaatca 30302631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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