View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_high_25 (Length: 271)
Name: NF17924_high_25
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 12323370 - 12323536
Alignment:
| Q |
70 |
tcaaaagaaccatgattatctgagtataatataccttagtgttctttcattgcctttgcatacatccatactttggcattctt-agattcaaaaaatagt |
168 |
Q |
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| T |
12323370 |
tcaaaagaaccatgattatctgagtataatataccttagttttc--------------catacatccatactttggcattctttagattcaaaaaatagt |
12323455 |
T |
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| Q |
169 |
taaaaattggtatcacaattgcaatttagaaaggtaccgaacttatatattctaacaatatattctgactttcaattatgata |
251 |
Q |
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| T |
12323456 |
taaaaattggtatcaaa--tgcaatttagaaaggtaccgaacttatatattctaacaatatattctgactttcaattatgata |
12323536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 12323265 - 12323317
Alignment:
| Q |
16 |
atgaacaaacgccaccttttgcagtgtaatgggacatcaattaaaagataagt |
68 |
Q |
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| T |
12323265 |
atgatcaaacgccaccttttgcagtgtaatgggacaccaattaaaagataagt |
12323317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 12413961 - 12413928
Alignment:
| Q |
199 |
aaggtaccgaacttatatattctaacaatatatt |
232 |
Q |
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| T |
12413961 |
aaggtaccgaacttatatattctaagaatatatt |
12413928 |
T |
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